Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38270 * 120.11814 * 2 1 4 4 C 1.37924 * 119.77262 * 180.14940 * 3 2 1 5 5 C 1.50706 * 119.72615 * 179.97438 * 4 3 2 6 6 C 1.38912 * 120.54651 * 0.02562 * 4 3 2 7 7 C 1.37664 * 119.68466 * 359.73148 * 6 4 3 8 8 C 1.37932 * 120.11284 * 180.02562 * 2 1 3 9 9 C 1.50628 * 122.55724 * 180.72649 * 7 6 4 10 10 H 1.09007 * 109.25237 * 102.25387 * 9 7 6 11 11 C 1.50693 * 109.25657 * 221.68260 * 9 7 6 12 12 H 1.08010 * 119.99436 * 0.02562 * 11 9 7 13 13 C 1.37876 * 120.00422 * 179.97438 * 11 9 7 14 14 N 1.31513 * 119.99980 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00060 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47098 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47175 * 120.00021 * 15 13 11 18 18 H 1.48505 * 109.46623 * 239.99645 * 15 13 11 19 19 C 1.52739 * 110.58552 * 341.97183 * 9 7 6 20 20 C 1.53320 * 108.39604 * 51.15879 * 19 9 7 21 21 C 1.50631 * 117.75561 * 179.39814 * 6 4 3 22 22 H 1.08995 * 109.47235 * 269.97619 * 1 2 3 23 23 H 1.09005 * 109.47037 * 29.97763 * 1 2 3 24 24 H 1.08995 * 109.47369 * 149.97272 * 1 2 3 25 25 H 1.07996 * 120.10952 * 0.17393 * 3 2 1 26 26 H 1.09000 * 109.47019 * 89.99970 * 5 4 3 27 27 H 1.09006 * 109.46902 * 209.99694 * 5 4 3 28 28 H 1.09000 * 109.47156 * 329.99736 * 5 4 3 29 29 H 1.07999 * 119.72681 * 359.97438 * 8 2 1 30 30 H 0.96997 * 120.00461 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.67819 * 291.42920 * 19 9 7 32 32 H 1.09001 * 109.67869 * 170.88492 * 19 9 7 33 33 H 1.08994 * 109.67966 * 170.46084 * 20 19 9 34 34 H 1.08994 * 109.71091 * 49.92997 * 20 19 9 35 35 H 1.09002 * 109.24847 * 282.62971 * 21 6 4 36 36 H 1.08995 * 109.25639 * 42.05637 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5800 1.1877 -0.0031 5 6 4.3351 2.4919 -0.0037 6 6 4.2787 -0.0129 -0.0068 7 6 3.5881 -1.2037 -0.0017 8 6 2.1990 -1.1932 -0.0005 9 6 4.2796 -2.5418 0.0108 10 1 4.2459 -2.9544 1.0192 11 6 3.5683 -3.4777 -0.9321 12 1 2.7045 -3.1356 -1.4830 13 6 4.0207 -4.7702 -1.0923 14 7 5.0734 -5.1862 -0.4227 15 14 3.1393 -5.9300 -2.2617 16 1 1.9935 -5.2239 -2.8892 17 1 4.0823 -6.3798 -3.3170 18 1 2.6412 -7.1086 -1.5079 19 6 5.7361 -2.3977 -0.4259 20 6 6.3833 -1.2854 0.4074 21 6 5.7836 0.0514 -0.0241 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.6645 2.1334 0.0028 26 1 4.5195 2.8054 1.0238 27 1 5.2863 2.3608 -0.5198 28 1 3.7459 3.2527 -0.5156 29 1 1.6563 -2.1270 -0.0005 30 1 5.3919 -6.0954 -0.5357 31 1 5.7781 -2.1360 -1.4832 32 1 6.2641 -3.3364 -0.2584 33 1 7.4597 -1.2772 0.2359 34 1 6.1816 -1.4538 1.4652 35 1 6.1216 0.2880 -1.0330 36 1 6.1179 0.8325 0.6587 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -23.728866 kcal Electronic energy + Delta-G solvation = -16124.386190 eV Core-core repulsion = 13764.066802 eV Total energy + Delta-G solvation = -2360.319388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98597 -37.37143 -35.46403 -33.92051 -32.28722 -30.41346 -28.40153 -27.11733 -26.46616 -23.71554 -22.69083 -21.26081 -19.70793 -18.33244 -17.04033 -16.51287 -16.31829 -15.66269 -14.95568 -14.62192 -14.50094 -14.30826 -13.95007 -13.82952 -13.32059 -13.29657 -13.05682 -13.03742 -12.82884 -12.66320 -12.40904 -12.16239 -11.89386 -11.86063 -11.65509 -11.37871 -10.96373 -10.62203 -10.40953 -9.19205 -9.04299 -8.10051 -6.23297 0.62558 0.72596 1.36669 1.38518 1.50019 2.40630 2.98410 3.16763 3.98444 4.03550 4.17902 4.28561 4.31756 4.37957 4.58918 4.67664 4.75469 4.84308 4.86831 4.88336 4.91601 4.97940 5.03053 5.09908 5.14671 5.22126 5.28557 5.40567 5.53055 5.59365 5.61539 5.78828 5.84649 5.86789 6.02883 6.23247 6.34109 6.47062 6.85369 7.43447 8.94046 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.009634 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.106862 B = 2905.745772 C = 3840.528700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.095 4.095 5 C -0.107 4.107 6 C -0.114 4.114 7 C -0.060 4.060 8 C -0.142 4.142 9 C 0.077 3.923 10 H -0.001 1.001 11 C -0.522 4.522 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.097 4.097 20 C -0.117 4.117 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.145 0.855 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.261 0.739 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 13.531 0.916 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.159 4.159 4 C -0.095 4.095 5 C -0.163 4.163 6 C -0.114 4.114 7 C -0.060 4.060 8 C -0.160 4.160 9 C 0.059 3.941 10 H 0.017 0.983 11 C -0.560 4.560 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.555 5.555 15 Si 0.778 3.222 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.135 4.135 20 C -0.154 4.154 21 C -0.102 4.102 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.162 0.838 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.625 13.380 0.937 13.667 hybrid contribution -0.372 -1.538 -0.525 1.667 sum -2.997 11.842 0.411 12.223 Atomic orbital electron populations 1.20744 0.89598 1.03005 1.02744 1.20155 0.97319 0.92799 0.99993 1.20988 0.93513 0.97625 1.03776 1.20228 0.94244 0.95291 0.99732 1.20828 1.00023 0.92469 1.02993 1.19787 0.96521 0.92015 1.03065 1.20248 0.94202 0.95526 0.96044 1.21164 0.94246 0.97649 1.02966 1.17602 0.92997 0.88787 0.94761 0.98312 1.21533 1.12981 0.96608 1.24895 0.93118 1.25721 0.95822 0.99559 0.97467 1.70031 1.24970 1.17689 1.42830 0.85582 0.78731 0.78857 0.78992 1.19465 1.20456 1.20441 1.21378 0.97321 0.98009 0.96791 1.21594 0.99569 0.95188 0.99084 1.20412 0.90306 0.97664 1.01804 0.90488 0.89780 0.92431 0.83779 0.90203 0.91017 0.90229 0.88165 0.92991 0.95592 0.92091 0.90963 0.93496 0.90865 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.78 10.02 71.23 0.71 -2.06 16 2 C -0.10 -3.59 5.87 -19.93 -0.12 -3.71 16 3 C -0.14 -4.36 9.35 22.20 0.21 -4.16 16 4 C -0.09 -3.04 5.89 -19.78 -0.12 -3.16 16 5 C -0.11 -2.38 9.15 71.24 0.65 -1.73 16 6 C -0.11 -4.44 5.74 -19.86 -0.11 -4.55 16 7 C -0.06 -2.80 5.42 -19.86 -0.11 -2.91 16 8 C -0.14 -6.24 8.35 22.36 0.19 -6.05 16 9 C 0.08 4.09 2.18 -12.40 -0.03 4.07 16 10 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 11 C -0.52 -29.94 7.75 25.60 0.20 -29.74 16 12 H 0.05 2.92 6.65 -2.91 -0.02 2.90 16 13 C 0.01 0.73 5.29 84.65 0.45 1.18 16 14 N -0.92 -53.85 11.34 21.45 0.24 -53.60 16 15 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C -0.10 -4.81 4.86 30.61 0.15 -4.66 16 20 C -0.12 -4.55 5.98 30.61 0.18 -4.36 16 21 C -0.07 -2.20 4.46 29.74 0.13 -2.07 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.08 1.79 8.09 -2.38 -0.02 1.77 16 24 H 0.06 1.58 8.09 -2.39 -0.02 1.56 16 25 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.52 6.69 -2.38 -0.02 1.50 16 28 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.10 4.71 6.99 -2.91 -0.02 4.69 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.06 3.35 6.28 -2.39 -0.01 3.34 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 1.86 8.10 -2.39 -0.02 1.85 16 35 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 36 H 0.09 2.48 7.16 -2.39 -0.02 2.47 16 Total: -1.00 -64.40 283.74 5.70 -58.70 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.05 Total: 11.93 kcal Atomic # 6 Polarization: -66.30 SS G_CDS: 2.39 Total: -63.91 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.24 Total: -53.60 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.40 5.70 -58.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.966 kcal (2) G-P(sol) polarization free energy of solvation -64.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds