Wall clock time and date at job start Mon Mar 30 2020 03:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99870 * 2 1 4 4 C 1.38216 * 119.99961 * 180.34936 * 3 2 1 5 5 C 1.38259 * 119.99789 * 359.88451 * 4 3 2 6 6 C 1.50704 * 119.99698 * 180.11260 * 5 4 3 7 7 H 1.08997 * 109.46790 * 185.79291 * 6 5 4 8 8 C 1.50704 * 109.47104 * 305.79035 * 6 5 4 9 9 H 1.08002 * 120.00192 * 0.02562 * 8 6 5 10 10 C 1.37880 * 119.99672 * 180.02562 * 8 6 5 11 11 N 1.31506 * 119.99892 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99544 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47270 * 60.00306 * 12 10 8 14 14 H 1.48504 * 109.46816 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47376 * 300.00078 * 12 10 8 16 16 C 1.52991 * 109.47168 * 65.79326 * 6 5 4 17 17 C 1.53004 * 117.49919 * 128.61903 * 16 6 5 18 18 C 1.52994 * 60.00046 * 252.50937 * 17 16 6 19 19 C 1.38207 * 120.00094 * 0.09663 * 5 4 3 20 20 C 1.50701 * 119.99999 * 179.97438 * 19 5 4 21 21 C 1.38210 * 120.00283 * 180.28170 * 2 1 3 22 22 H 1.09008 * 109.46844 * 269.72377 * 1 2 3 23 23 H 1.09001 * 109.47186 * 29.71783 * 1 2 3 24 24 H 1.08996 * 109.47497 * 149.72137 * 1 2 3 25 25 H 1.07995 * 120.00101 * 0.28592 * 3 2 1 26 26 H 1.08002 * 120.00302 * 180.02562 * 4 3 2 27 27 H 0.97009 * 119.99684 * 179.97438 * 11 10 8 28 28 H 1.08999 * 115.55131 * 274.32770 * 16 6 5 29 29 H 1.08998 * 117.49714 * 0.02562 * 17 16 6 30 30 H 1.09003 * 117.49513 * 145.01622 * 17 16 6 31 31 H 1.09010 * 117.49976 * 252.51038 * 18 17 16 32 32 H 1.08998 * 117.50087 * 107.48802 * 18 17 16 33 33 H 1.09005 * 109.46989 * 275.42554 * 20 19 5 34 34 H 1.08997 * 109.47262 * 35.42586 * 20 19 5 35 35 H 1.08998 * 109.47402 * 155.42687 * 20 19 5 36 36 H 1.08000 * 119.99497 * 359.69417 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0073 5 6 4.2717 0.0000 -0.0122 6 6 5.7787 0.0001 -0.0176 7 1 6.1416 -1.0221 -0.1247 8 6 6.2769 0.8334 -1.1702 9 1 5.5727 1.3151 -1.8324 10 6 7.6317 0.9807 -1.3794 11 7 8.4891 0.3937 -0.5734 12 14 8.2492 2.0142 -2.8077 13 1 7.7554 3.4069 -2.6609 14 1 9.7342 2.0131 -2.8138 15 1 7.7491 1.4436 -4.0842 16 6 6.2934 0.5889 1.2974 17 6 7.3303 -0.2225 2.0768 18 6 5.8938 -0.1198 2.5931 19 6 3.5806 -1.1969 -0.0118 20 6 4.3341 -2.5020 -0.0177 21 6 2.1981 -1.1969 -0.0059 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 0.8925 -0.5094 24 1 -0.3634 -0.8874 -0.5181 25 1 1.6583 2.1326 0.0047 26 1 4.1204 2.1327 -0.0069 27 1 9.4424 0.4971 -0.7208 28 1 6.3802 1.6751 1.3240 29 1 7.6461 -1.1755 1.6525 30 1 8.0997 0.3300 2.6162 31 1 5.7180 0.5002 3.4723 32 1 5.2641 -1.0055 2.5087 33 1 4.5956 -2.7659 -1.0425 34 1 5.2435 -2.3992 0.5744 35 1 3.7083 -3.2848 0.4106 36 1 1.6581 -2.1322 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084363569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:14 Heat of formation + Delta-G solvation = 15.995577 kcal Electronic energy + Delta-G solvation = -16052.410023 eV Core-core repulsion = 13693.813216 eV Total energy + Delta-G solvation = -2358.596807 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58260 -38.08202 -34.83019 -34.20350 -32.85213 -30.25229 -27.95496 -26.86117 -24.72325 -22.94806 -22.87742 -21.44081 -20.30246 -18.43876 -16.94230 -16.40305 -16.22497 -15.71827 -15.37754 -14.95175 -14.46602 -14.16115 -13.89676 -13.84171 -13.63020 -13.24469 -12.85753 -12.83011 -12.67274 -12.39124 -12.18263 -12.10434 -11.90213 -11.67579 -11.46913 -11.39158 -10.59009 -10.49209 -10.14235 -9.42989 -8.98152 -8.02462 -6.14327 0.68520 0.75136 1.41382 1.41944 1.49081 2.45385 3.06175 3.24443 3.39401 4.08288 4.15729 4.24623 4.30896 4.37819 4.51745 4.57465 4.62324 4.71900 4.84266 4.89994 4.90986 4.95865 5.03298 5.09264 5.15768 5.20797 5.31008 5.47459 5.50230 5.52684 5.64838 5.72464 5.83063 5.87592 5.93451 6.19967 6.39097 6.49671 6.92877 7.50960 9.01043 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.008998 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.471601 B = 3111.153960 C = 3616.782515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.111 4.111 3 C -0.135 4.135 4 C -0.121 4.121 5 C -0.060 4.060 6 C 0.107 3.893 7 H 0.021 0.979 8 C -0.529 4.529 9 H 0.044 0.956 10 C 0.024 3.976 11 N -0.895 5.895 12 Si 0.942 3.058 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.277 1.277 16 C -0.097 4.097 17 C -0.140 4.140 18 C -0.192 4.192 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.126 4.126 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.258 0.742 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 -2.354 3.115 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.139 4.139 5 C -0.060 4.060 6 C 0.089 3.911 7 H 0.039 0.961 8 C -0.567 4.567 9 H 0.062 0.938 10 C -0.176 4.176 11 N -0.532 5.532 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.203 1.203 16 C -0.116 4.116 17 C -0.178 4.178 18 C -0.229 4.229 19 C -0.110 4.110 20 C -0.162 4.162 21 C -0.143 4.143 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.348 -2.385 3.148 12.016 hybrid contribution 1.139 0.814 -0.863 1.644 sum -10.209 -1.571 2.285 10.579 Atomic orbital electron populations 1.20731 0.88982 1.03281 1.02828 1.20131 0.97440 0.92548 1.01006 1.21181 0.93397 0.98505 1.02210 1.21008 0.94466 0.97625 1.00846 1.20221 0.96767 0.92851 0.96148 1.17363 0.86694 0.95673 0.91398 0.96141 1.21293 0.91568 1.31541 1.12326 0.93805 1.25577 0.97209 0.96732 0.98124 1.70118 1.01705 1.43632 1.37771 0.85875 0.77071 0.79624 0.80590 1.20116 1.20918 1.20264 1.21966 1.02155 0.95758 0.91694 1.22347 0.90960 1.01377 1.03070 1.23036 0.98360 1.03177 0.98347 1.20029 0.94467 0.95054 1.01460 1.20738 0.99670 0.94008 1.01789 1.21060 0.92672 0.98440 1.02166 0.90479 0.91058 0.90727 0.84993 0.87990 0.93303 0.92303 0.91158 0.90873 0.89035 0.89800 0.92212 0.92825 0.89778 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.01 71.24 0.71 -1.38 16 2 C -0.11 -3.33 5.88 -19.87 -0.12 -3.45 16 3 C -0.14 -4.54 9.70 22.27 0.22 -4.32 16 4 C -0.12 -5.00 8.77 22.27 0.20 -4.80 16 5 C -0.06 -2.62 4.40 -19.87 -0.09 -2.71 16 6 C 0.11 5.34 1.83 -12.29 -0.02 5.32 16 7 H 0.02 1.11 5.47 -2.39 -0.01 1.09 16 8 C -0.53 -29.29 8.07 25.60 0.21 -29.08 16 9 H 0.04 2.46 7.43 -2.91 -0.02 2.44 16 10 C 0.02 1.34 5.30 84.66 0.45 1.79 16 11 N -0.89 -50.35 11.44 21.45 0.25 -50.10 16 12 Si 0.94 44.02 29.54 68.60 2.03 46.04 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 16 C -0.10 -4.61 4.00 -10.80 -0.04 -4.65 16 17 C -0.14 -6.26 9.05 30.59 0.28 -5.99 16 18 C -0.19 -7.66 9.87 30.59 0.30 -7.36 16 19 C -0.11 -4.18 5.88 -19.87 -0.12 -4.30 16 20 C -0.11 -3.63 9.15 71.24 0.65 -2.98 16 21 C -0.13 -3.98 9.34 22.27 0.21 -3.77 16 22 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 24 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 25 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 26 H 0.10 4.43 7.90 -2.91 -0.02 4.41 16 27 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 28 H 0.06 3.01 8.11 -2.39 -0.02 2.99 16 29 H 0.07 3.32 8.05 -2.39 -0.02 3.30 16 30 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 32 H 0.08 3.24 8.08 -2.39 -0.02 3.22 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.07 16 34 H 0.05 2.03 6.47 -2.39 -0.02 2.01 16 35 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -59.76 296.26 6.14 -53.62 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.04 Total: 18.13 kcal Atomic # 6 Polarization: -70.52 SS G_CDS: 2.83 Total: -67.69 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.25 Total: -50.10 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.76 6.14 -53.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084363569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.611 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds