Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00091 * 2 1 4 4 C 1.50704 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.34293 * 126.47372 * 259.95972 * 4 3 2 6 6 N 1.36999 * 109.93440 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09331 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99830 * 158.46676 * 7 6 5 9 9 C 1.38847 * 120.00158 * 338.46079 * 7 6 5 10 10 N 1.31440 * 120.00226 * 160.82373 * 9 7 6 11 11 Si 1.86803 * 119.99998 * 340.82078 * 9 7 6 12 12 H 1.48508 * 109.46869 * 94.10049 * 11 9 7 13 13 H 1.48498 * 109.47451 * 214.09908 * 11 9 7 14 14 H 1.48500 * 109.47105 * 334.10158 * 11 9 7 15 15 C 1.38117 * 109.81517 * 0.07049 * 6 5 4 16 16 C 1.38950 * 133.41668 * 179.90273 * 15 6 5 17 17 C 1.37899 * 119.92187 * 180.02562 * 16 15 6 18 18 C 1.38754 * 120.64466 * 359.97438 * 17 16 15 19 19 C 1.37771 * 120.36486 * 0.04442 * 18 17 16 20 20 C 1.39524 * 119.65848 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47594 * 60.00371 * 1 2 3 22 22 H 1.09007 * 109.47321 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47460 * 300.00189 * 1 2 3 24 24 H 1.00893 * 111.00101 * 123.95337 * 2 1 3 25 25 H 1.08997 * 109.47463 * 59.99728 * 3 2 1 26 26 H 1.08999 * 109.47001 * 299.99922 * 3 2 1 27 27 H 1.08010 * 125.03613 * 0.03247 * 5 4 3 28 28 H 0.97006 * 120.00217 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.04071 * 0.02562 * 16 15 6 30 30 H 1.08001 * 119.67734 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.81652 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.17475 * 179.69845 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3054 1.4980 1.0624 6 7 5.6162 1.3945 0.6779 7 6 6.6959 1.5135 1.5162 8 1 7.6481 1.0891 1.2339 9 6 6.5644 2.1796 2.7273 10 7 7.4440 1.9835 3.6842 11 14 5.1376 3.3548 2.9969 12 1 4.0195 2.6328 3.6557 13 1 5.5785 4.4789 3.8613 14 1 4.6803 3.8867 1.6880 15 6 5.6882 1.1535 -0.6802 16 6 6.7456 0.9710 -1.5630 17 6 6.4942 0.7426 -2.8995 18 6 5.1919 0.6921 -3.3756 19 6 4.1291 0.8708 -2.5173 20 6 4.3675 1.1032 -1.1624 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8305 -0.5261 0.7813 25 1 1.6459 1.8948 0.8899 26 1 1.6459 1.8947 -0.8900 27 1 3.9681 1.6850 2.0713 28 1 7.3519 2.4486 4.5305 29 1 7.7631 1.0080 -1.2029 30 1 7.3190 0.6008 -3.5821 31 1 5.0103 0.5119 -4.4249 32 1 3.1168 0.8357 -2.8921 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084848370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 62.078843 kcal Electronic energy + Delta-G solvation = -15587.882938 eV Core-core repulsion = 13127.744107 eV Total energy + Delta-G solvation = -2460.138830 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38640 -36.26424 -35.73358 -33.21778 -31.40644 -29.11483 -28.48772 -26.63132 -24.42928 -22.88458 -21.72465 -20.54041 -19.31597 -17.56914 -15.97681 -15.76954 -15.37639 -14.52281 -14.36374 -14.14621 -13.55733 -13.49405 -13.20050 -12.79289 -12.60652 -12.20338 -11.65435 -11.50193 -11.47332 -11.29228 -10.95777 -10.54829 -10.47255 -10.09913 -9.88389 -9.26865 -8.66312 -8.09833 -7.29044 -6.90842 -6.88609 -4.33950 2.01453 2.52918 2.88180 3.05176 3.13560 3.52206 3.82251 4.29320 4.57374 4.88326 4.98255 5.44972 5.51509 5.62069 5.70784 5.79301 5.88824 5.90430 5.98165 6.05734 6.19242 6.39819 6.58006 6.75012 6.82183 6.96463 7.24264 7.33311 7.39126 7.47919 7.61140 7.73421 7.85255 7.94551 8.20232 8.81120 9.11646 10.18410 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.012051 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.386473 B = 2322.926400 C = 3571.638778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.148 3.852 4 C -0.221 4.221 5 C 0.011 3.989 6 N -0.291 5.291 7 C -0.342 4.342 8 H 0.121 0.879 9 C 0.068 3.932 10 N -0.836 5.836 11 Si 0.887 3.113 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.248 1.248 15 C 0.060 3.940 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.168 4.168 19 C -0.072 4.072 20 C -0.095 4.095 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.015 0.985 24 H 0.342 0.658 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -0.554 -5.522 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C 0.019 3.981 4 C -0.229 4.229 5 C -0.124 4.124 6 N 0.047 4.953 7 C -0.470 4.470 8 H 0.138 0.862 9 C -0.143 4.143 10 N -0.466 5.466 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.171 1.171 15 C -0.051 4.051 16 C -0.124 4.124 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.091 4.091 20 C -0.100 4.100 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.159 0.841 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.793 -0.537 -5.714 9.679 hybrid contribution -0.623 0.861 1.441 1.790 sum -8.417 0.323 -4.273 9.445 Atomic orbital electron populations 1.22176 0.89034 1.01189 0.99822 1.60499 1.06159 1.15099 1.50277 1.19964 0.90348 0.88443 0.99301 1.19466 0.92815 1.18589 0.92038 1.21312 0.83687 1.08921 0.98435 1.40311 1.04422 1.46146 1.04406 1.19452 0.91355 1.37537 0.98608 0.86161 1.25286 0.98020 0.96665 0.94366 1.69725 1.35443 1.37718 1.03761 0.86701 0.80909 0.81051 0.79957 1.19699 1.21005 1.17139 1.18254 0.95039 1.08187 0.83645 1.19941 0.96743 1.03427 0.92273 1.20498 0.96288 1.04347 0.94225 1.20564 0.92691 1.07161 0.98355 1.20257 0.97755 0.99661 0.91442 1.18705 0.91625 1.06787 0.92929 0.92106 0.91964 0.96693 0.84080 0.95843 0.91272 0.83784 0.90458 0.87188 0.87314 0.87632 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 60.06 0.64 0.99 16 2 N -0.69 -10.95 6.84 -122.42 -0.84 -11.79 16 3 C 0.15 2.59 6.21 -4.98 -0.03 2.56 16 4 C -0.22 -4.73 5.83 -102.62 -0.60 -5.33 16 5 C 0.01 0.26 8.24 -16.63 -0.14 0.12 16 6 N -0.29 -7.35 2.76 -59.74 -0.16 -7.52 16 7 C -0.34 -9.20 10.35 -14.92 -0.15 -9.35 16 8 H 0.12 3.37 8.06 -52.49 -0.42 2.94 16 9 C 0.07 1.78 5.44 -17.49 -0.10 1.68 16 10 N -0.84 -22.48 13.96 55.49 0.77 -21.70 16 11 Si 0.89 20.06 24.67 -169.99 -4.19 15.87 16 12 H -0.27 -5.79 6.67 56.52 0.38 -5.41 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.25 -5.75 6.71 56.52 0.38 -5.38 16 15 C 0.06 1.43 6.75 -83.84 -0.57 0.86 16 16 C -0.10 -2.23 9.95 -39.44 -0.39 -2.62 16 17 C -0.13 -2.48 10.02 -39.51 -0.40 -2.87 16 18 C -0.17 -3.03 10.03 -39.56 -0.40 -3.43 16 19 C -0.07 -1.41 10.10 -39.27 -0.40 -1.81 16 20 C -0.10 -2.11 6.35 -105.09 -0.67 -2.78 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.34 5.40 8.81 -39.30 -0.35 5.05 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.15 3.24 4.39 -52.48 -0.23 3.01 16 28 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -27.80 271.19 -7.51 -35.31 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.99 Total: 7.73 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.19 Total: -21.99 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.23 Total: -41.00 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.19 Total: 15.87 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.80 -7.51 -35.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084848370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.386 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds