Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00091 * 2 1 4 4 C 1.50704 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.34293 * 126.47372 * 259.95972 * 4 3 2 6 6 N 1.36999 * 109.93440 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09331 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99830 * 158.46676 * 7 6 5 9 9 C 1.38847 * 120.00158 * 338.46079 * 7 6 5 10 10 N 1.31440 * 120.00226 * 160.82373 * 9 7 6 11 11 Si 1.86803 * 119.99998 * 340.82078 * 9 7 6 12 12 H 1.48508 * 109.46869 * 94.10049 * 11 9 7 13 13 H 1.48498 * 109.47451 * 214.09908 * 11 9 7 14 14 H 1.48500 * 109.47105 * 334.10158 * 11 9 7 15 15 C 1.38117 * 109.81517 * 0.07049 * 6 5 4 16 16 C 1.38950 * 133.41668 * 179.90273 * 15 6 5 17 17 C 1.37899 * 119.92187 * 180.02562 * 16 15 6 18 18 C 1.38754 * 120.64466 * 359.97438 * 17 16 15 19 19 C 1.37771 * 120.36486 * 0.04442 * 18 17 16 20 20 C 1.39524 * 119.65848 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47594 * 60.00371 * 1 2 3 22 22 H 1.09007 * 109.47321 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47460 * 300.00189 * 1 2 3 24 24 H 1.00893 * 111.00101 * 123.95337 * 2 1 3 25 25 H 1.08997 * 109.47463 * 59.99728 * 3 2 1 26 26 H 1.08999 * 109.47001 * 299.99922 * 3 2 1 27 27 H 1.08010 * 125.03613 * 0.03247 * 5 4 3 28 28 H 0.97006 * 120.00217 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.04071 * 0.02562 * 16 15 6 30 30 H 1.08001 * 119.67734 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.81652 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.17475 * 179.69845 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3054 1.4980 1.0624 6 7 5.6162 1.3945 0.6779 7 6 6.6959 1.5135 1.5162 8 1 7.6481 1.0891 1.2339 9 6 6.5644 2.1796 2.7273 10 7 7.4440 1.9835 3.6842 11 14 5.1376 3.3548 2.9969 12 1 4.0195 2.6328 3.6557 13 1 5.5785 4.4789 3.8613 14 1 4.6803 3.8867 1.6880 15 6 5.6882 1.1535 -0.6802 16 6 6.7456 0.9710 -1.5630 17 6 6.4942 0.7426 -2.8995 18 6 5.1919 0.6921 -3.3756 19 6 4.1291 0.8708 -2.5173 20 6 4.3675 1.1032 -1.1624 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8305 -0.5261 0.7813 25 1 1.6459 1.8948 0.8899 26 1 1.6459 1.8947 -0.8900 27 1 3.9681 1.6850 2.0713 28 1 7.3519 2.4486 4.5305 29 1 7.7631 1.0080 -1.2029 30 1 7.3190 0.6008 -3.5821 31 1 5.0103 0.5119 -4.4249 32 1 3.1168 0.8357 -2.8921 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084848370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 44.651406 kcal Electronic energy + Delta-G solvation = -15588.638648 eV Core-core repulsion = 13127.744107 eV Total energy + Delta-G solvation = -2460.894541 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08587 -37.86441 -37.04211 -35.06829 -33.05261 -30.75214 -30.04218 -28.14486 -26.05295 -24.17864 -23.35696 -22.20097 -20.99350 -19.36432 -17.72656 -17.37044 -16.84582 -16.00249 -15.91828 -15.65208 -15.13216 -14.93091 -14.86012 -14.41853 -14.23006 -13.71659 -13.19644 -13.00629 -12.92685 -12.59905 -12.48336 -12.22126 -12.15138 -11.86114 -11.48227 -11.10901 -10.33875 -9.29261 -8.98128 -8.85435 -8.58350 -6.32808 0.39496 0.90443 1.09292 1.24340 1.33818 1.80896 1.97720 2.55100 2.78616 3.25860 3.63356 3.91511 4.12335 4.23950 4.36225 4.41925 4.54357 4.63993 4.71196 4.75840 4.85300 4.98631 5.08230 5.14114 5.21520 5.30664 5.50127 5.74770 5.80426 5.90372 6.11208 6.17693 6.25671 6.44515 6.50338 6.93987 7.26321 8.27618 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.012051 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.386473 B = 2322.926400 C = 3571.638778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.700 5.700 3 C 0.151 3.849 4 C -0.205 4.205 5 C -0.012 4.012 6 N -0.319 5.319 7 C -0.362 4.362 8 H 0.086 0.914 9 C 0.028 3.972 10 N -0.878 5.878 11 Si 0.947 3.053 12 H -0.249 1.249 13 H -0.274 1.274 14 H -0.259 1.259 15 C 0.031 3.969 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.160 4.160 19 C -0.073 4.073 20 C -0.117 4.117 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.023 0.977 24 H 0.339 0.661 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.292 0.708 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -0.514 -7.677 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.331 5.331 3 C 0.023 3.977 4 C -0.214 4.214 5 C -0.145 4.145 6 N 0.016 4.984 7 C -0.489 4.489 8 H 0.104 0.896 9 C -0.179 4.179 10 N -0.511 5.511 11 Si 0.771 3.229 12 H -0.175 1.175 13 H -0.201 1.201 14 H -0.183 1.183 15 C -0.079 4.079 16 C -0.161 4.161 17 C -0.133 4.133 18 C -0.179 4.179 19 C -0.091 4.091 20 C -0.122 4.122 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.042 0.958 24 H 0.156 0.844 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.496 -0.510 -7.871 13.129 hybrid contribution 0.179 0.730 1.836 1.984 sum -10.317 0.220 -6.035 11.954 Atomic orbital electron populations 1.22252 0.86607 1.02524 1.00658 1.60448 1.08403 1.13864 1.50371 1.19991 0.87586 0.89767 1.00401 1.20000 0.94801 1.15553 0.91024 1.21595 0.83460 1.10057 0.99343 1.40295 1.04441 1.48825 1.04864 1.19224 0.91265 1.38630 0.99826 0.89643 1.25945 1.00582 0.97588 0.93777 1.69785 1.37547 1.39229 1.04496 0.85791 0.78627 0.79154 0.79339 1.17451 1.20055 1.18343 1.18854 0.96822 1.08543 0.83662 1.20176 0.96130 1.06029 0.93755 1.20979 0.98160 1.01020 0.93167 1.21082 0.91685 1.04848 1.00293 1.20635 0.99667 0.98524 0.90284 1.19115 0.90933 1.07641 0.94503 0.91210 0.90452 0.95807 0.84362 0.94921 0.89973 0.83509 0.89814 0.88162 0.83719 0.83262 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.70 127.69 1.37 1.98 16 2 N -0.70 -20.27 6.84 -541.23 -3.70 -23.98 16 3 C 0.15 4.88 6.21 85.56 0.53 5.42 16 4 C -0.21 -8.56 5.83 -18.56 -0.11 -8.67 16 5 C -0.01 -0.58 8.24 82.98 0.68 0.10 16 6 N -0.32 -16.76 2.76 -342.91 -0.95 -17.71 16 7 C -0.36 -20.72 10.35 84.00 0.87 -19.85 16 8 H 0.09 5.25 8.06 -2.91 -0.02 5.23 16 9 C 0.03 1.55 5.44 84.90 0.46 2.01 16 10 N -0.88 -49.37 13.96 21.64 0.30 -49.06 16 11 Si 0.95 42.27 24.67 68.60 1.69 43.97 16 12 H -0.25 -10.14 6.67 99.48 0.66 -9.47 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.26 -11.91 6.71 99.48 0.67 -11.24 16 15 C 0.03 1.52 6.75 38.92 0.26 1.79 16 16 C -0.14 -6.11 9.95 22.36 0.22 -5.88 16 17 C -0.11 -3.92 10.02 22.31 0.22 -3.69 16 18 C -0.16 -5.07 10.03 22.28 0.22 -4.85 16 19 C -0.07 -2.59 10.10 22.47 0.23 -2.36 16 20 C -0.12 -5.05 6.35 -20.17 -0.13 -5.17 16 21 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.34 10.07 8.81 -89.70 -0.79 9.28 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.15 6.60 4.39 -2.91 -0.01 6.58 16 28 H 0.29 14.87 8.31 -92.70 -0.77 14.10 16 29 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -62.58 271.19 2.43 -60.15 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.25 Total: 25.82 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 4.84 Total: -39.19 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -4.35 Total: -90.75 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.69 Total: 43.97 kcal Total: -62.58 2.43 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084848370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.802 kcal (2) G-P(sol) polarization free energy of solvation -62.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds