Wall clock time and date at job start Mon Mar 30 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 N 1.39872 * 125.46593 * 90.02455 * 3 2 1 5 5 C 1.30237 * 110.08761 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.10808 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.46946 * 270.04235 * 6 5 4 8 8 H 1.07999 * 120.00248 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99946 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99554 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47154 * 60.00015 * 11 9 7 13 13 H 1.48499 * 109.47237 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47125 * 300.00097 * 11 9 7 15 15 C 1.45927 * 107.78420 * 359.97438 * 5 4 3 16 16 C 1.39953 * 134.02942 * 180.02562 * 15 5 4 17 17 C 1.36464 * 119.63421 * 180.28375 * 16 15 5 18 18 C 1.38969 * 120.62792 * 359.40529 * 17 16 15 19 19 C 1.36587 * 120.81343 * 0.61819 * 18 17 16 20 20 C 1.37041 * 125.45551 * 270.02074 * 3 2 1 21 21 H 1.09005 * 109.47209 * 299.99983 * 1 2 3 22 22 H 1.08999 * 109.47207 * 60.00397 * 1 2 3 23 23 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47284 * 239.99613 * 2 1 3 25 25 H 1.08999 * 109.47207 * 119.99603 * 2 1 3 26 26 H 1.09003 * 109.47025 * 30.04505 * 6 5 4 27 27 H 1.08998 * 109.46950 * 150.04185 * 6 5 4 28 28 H 0.97005 * 119.99992 * 180.02562 * 10 9 7 29 29 H 1.08002 * 120.17876 * 0.02562 * 16 15 5 30 30 H 1.08000 * 119.68346 * 179.72098 * 17 16 15 31 31 H 1.08004 * 119.59055 * 180.30966 * 18 17 16 32 32 H 1.08005 * 120.07354 * 179.70648 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2893 2.1462 1.1392 5 6 2.7082 3.3300 0.7938 6 6 3.1013 4.4417 1.7323 7 6 1.8927 5.2856 2.0455 8 1 0.9356 5.0410 1.6091 9 6 2.0088 6.3698 2.8893 10 7 3.1743 6.6673 3.4211 11 14 0.5109 7.4163 3.2770 12 1 -0.5298 6.5727 3.9180 13 1 0.8982 8.5117 4.2018 14 1 -0.0268 7.9959 2.0200 15 6 2.7290 3.3876 -0.6642 16 6 3.0786 4.3736 -1.5938 17 6 2.9787 4.1083 -2.9286 18 6 2.5451 2.8650 -3.3728 19 6 2.1979 1.8868 -2.4849 20 6 2.2829 2.1308 -1.1163 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.4962 4.0160 2.6547 27 1 3.8649 5.0612 1.2620 28 1 3.2560 7.4299 4.0151 29 1 3.4216 5.3406 -1.2565 30 1 3.2440 4.8702 -3.6467 31 1 2.4771 2.6714 -4.4332 32 1 1.8580 0.9264 -2.8434 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089178380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:47 Heat of formation + Delta-G solvation = 73.040108 kcal Electronic energy + Delta-G solvation = -15351.089519 eV Core-core repulsion = 12891.426005 eV Total energy + Delta-G solvation = -2459.663514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65783 -36.75784 -34.56121 -32.89755 -30.94311 -29.56175 -29.06053 -27.23284 -23.81649 -22.86976 -22.17900 -20.97963 -18.95047 -16.54127 -16.37810 -16.31011 -14.81716 -14.67009 -14.49236 -14.20264 -13.74025 -13.31507 -12.68630 -12.48089 -12.09364 -12.04435 -11.59820 -11.48624 -11.18030 -11.07236 -10.80369 -10.69627 -10.54215 -10.03204 -9.72404 -9.58732 -9.06525 -8.42093 -8.10883 -7.26582 -6.05045 -4.08231 1.48297 1.97671 2.94936 3.26233 3.33923 3.37519 3.43113 4.28351 4.46851 4.78822 4.97642 5.17676 5.25093 5.30616 5.32795 5.38249 5.51470 5.59604 5.72776 5.84050 5.93766 6.16945 6.26171 6.31333 6.46580 6.77366 6.95904 7.21292 7.31843 7.51674 7.52792 7.63646 7.90335 8.26609 8.51616 8.93905 9.54790 11.05146 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024706 B = 0.007898 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.067024 B = 3544.128208 C = 4122.897036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 N -0.422 5.422 4 N -0.275 5.275 5 C 0.151 3.849 6 C 0.089 3.911 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C -0.172 4.172 16 C -0.021 4.021 17 C -0.181 4.181 18 C -0.077 4.077 19 C -0.155 4.155 20 C 0.125 3.875 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 -9.561 -11.237 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 N -0.209 5.209 4 N -0.086 5.086 5 C -0.026 4.026 6 C 0.050 3.950 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.180 4.180 16 C -0.041 4.041 17 C -0.201 4.201 18 C -0.097 4.097 19 C -0.178 4.178 20 C 0.010 3.990 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.017 -10.436 -10.105 14.666 hybrid contribution -0.764 0.963 -0.456 1.311 sum -2.781 -9.474 -10.561 14.458 Atomic orbital electron populations 1.22218 0.95353 1.02128 1.03231 1.21331 0.94498 0.78791 1.03193 1.48382 1.59143 1.11885 1.01487 1.76729 1.19893 1.05079 1.06910 1.24700 0.92887 0.93112 0.91934 1.17898 0.97469 0.87650 0.91948 1.20872 0.94540 1.11115 1.28317 0.92582 1.24946 0.96144 0.97325 0.95633 1.69937 1.23300 1.28333 1.31629 0.86557 0.82858 0.79759 0.78299 1.20210 1.21134 1.20105 1.20056 1.09410 0.94634 0.93870 1.20506 0.94053 0.97840 0.91744 1.20544 1.06603 0.97530 0.95379 1.20563 0.97485 0.93098 0.98585 1.19642 1.08546 1.00436 0.89140 1.18892 0.98419 0.92203 0.89512 0.91580 0.92368 0.91250 0.90137 0.89401 0.94144 0.93820 0.92656 0.85200 0.86265 0.86263 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.14 1.97 7.09 -4.04 -0.03 1.95 16 3 N -0.42 -8.05 3.65 -58.71 -0.21 -8.26 16 4 N -0.28 -6.34 12.40 34.84 0.43 -5.90 16 5 C 0.15 3.62 6.62 -80.19 -0.53 3.09 16 6 C 0.09 2.36 5.57 -29.04 -0.16 2.20 16 7 C -0.51 -14.48 9.09 -34.44 -0.31 -14.80 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 11 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 C -0.17 -3.64 6.33 -105.20 -0.67 -4.30 16 16 C -0.02 -0.39 10.07 -39.58 -0.40 -0.79 16 17 C -0.18 -2.73 9.97 -39.95 -0.40 -3.13 16 18 C -0.08 -1.07 9.96 -39.91 -0.40 -1.46 16 19 C -0.16 -2.36 9.97 -39.79 -0.40 -2.76 16 20 C 0.13 2.37 6.87 -84.17 -0.58 1.79 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 282.69 15.07 4.26 4.26 Total: -1.00 -31.54 282.69 -7.58 -39.12 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.19 Total: -2.16 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.59 Total: -18.32 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.95 Total: -39.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.54 -7.58 -39.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089178380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.164 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds