Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36822 * 125.06578 * 2 1 4 4 C 1.50705 * 125.03421 * 359.97438 * 3 2 1 5 5 H 1.08998 * 109.47205 * 335.26040 * 4 3 2 6 6 N 1.46905 * 109.46892 * 215.26420 * 4 3 2 7 7 C 1.50693 * 109.47041 * 95.26451 * 4 3 2 8 8 H 1.08003 * 120.00121 * 0.02562 * 7 4 3 9 9 C 1.37880 * 120.00000 * 179.97438 * 7 4 3 10 10 N 1.31505 * 119.99810 * 0.02562 * 9 7 4 11 11 Si 1.86797 * 119.99928 * 179.97438 * 9 7 4 12 12 H 1.48508 * 109.47051 * 90.00465 * 11 9 7 13 13 H 1.48503 * 109.47319 * 210.00298 * 11 9 7 14 14 H 1.48498 * 109.47515 * 330.00499 * 11 9 7 15 15 C 1.34244 * 109.93217 * 180.02562 * 3 2 1 16 16 C 1.46483 * 106.99461 * 359.97438 * 15 3 2 17 17 C 1.39630 * 134.02940 * 180.02562 * 16 15 3 18 18 C 1.36631 * 119.76634 * 179.97438 * 17 16 15 19 19 C 1.38835 * 120.52274 * 0.04205 * 18 17 16 20 20 C 1.37748 * 120.67027 * 359.93627 * 19 18 17 21 21 C 1.37693 * 125.05863 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46991 * 84.84032 * 1 2 3 23 23 H 1.09001 * 109.47514 * 204.83820 * 1 2 3 24 24 H 1.08998 * 109.47019 * 324.83996 * 1 2 3 25 25 H 1.00898 * 110.99875 * 295.28521 * 6 4 3 26 26 H 1.00899 * 110.99835 * 59.24484 * 6 4 3 27 27 H 0.97006 * 120.00211 * 179.97438 * 10 9 7 28 28 H 1.07997 * 126.49934 * 180.02562 * 15 3 2 29 29 H 1.08003 * 120.11618 * 359.72608 * 17 16 15 30 30 H 1.08000 * 119.73649 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.65981 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.10948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1199 0.0000 4 6 1.7381 2.5369 -0.0006 5 1 0.7370 2.5608 -0.4310 6 7 2.6351 3.3821 -0.8001 7 6 1.6892 3.0540 1.4141 8 1 1.9990 2.4200 2.2318 9 6 1.2499 4.3367 1.6644 10 7 0.8732 5.1088 0.6687 11 14 1.1886 4.9774 3.4180 12 1 2.4837 5.6211 3.7554 13 1 0.0936 5.9726 3.5435 14 1 0.9399 3.8478 4.3494 15 6 3.5469 0.7694 -0.0006 16 6 3.5945 -0.6947 -0.0003 17 6 4.6294 -1.6320 -0.0002 18 6 4.3360 -2.9664 0.0005 19 6 3.0165 -3.3982 0.0003 20 6 1.9802 -2.4907 0.0006 21 6 2.2559 -1.1271 -0.0005 22 1 -0.3633 0.0924 -1.0235 23 1 -0.3634 -0.9326 0.4317 24 1 -0.3633 0.8402 0.5918 25 1 3.5501 3.4382 -0.3786 26 1 2.6945 3.0484 -1.7505 27 1 0.5637 6.0111 0.8449 28 1 4.3937 1.4397 -0.0003 29 1 5.6582 -1.3034 -0.0048 30 1 5.1368 -3.6910 0.0002 31 1 2.8004 -4.4564 0.0005 32 1 0.9571 -2.8367 0.0009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104495364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = 59.457369 kcal Electronic energy + Delta-G solvation = -15546.819635 eV Core-core repulsion = 13086.567129 eV Total energy + Delta-G solvation = -2460.252506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.78016 -36.87860 -34.34460 -32.31684 -31.34689 -29.90917 -28.01763 -26.11112 -25.56831 -23.00170 -21.06499 -20.92072 -18.80647 -16.53723 -16.52716 -15.82190 -14.95724 -14.71285 -14.36757 -14.06776 -13.69694 -13.37907 -12.85441 -12.47503 -12.40612 -12.22999 -11.77587 -11.45644 -11.11630 -10.95365 -10.79433 -10.61949 -10.43978 -9.92438 -9.33064 -9.09893 -8.53849 -7.57640 -7.32664 -6.96664 -5.98488 -4.14892 1.59624 2.05507 3.28618 3.34143 3.36170 3.43637 3.47212 4.34374 4.42181 5.09053 5.22657 5.27380 5.32802 5.42762 5.63589 5.66059 5.82095 5.90871 6.03017 6.17498 6.23432 6.34556 6.52893 6.56309 6.84939 6.99816 7.06127 7.28330 7.54085 7.80885 7.83367 7.92731 8.07523 8.52298 8.90972 9.02315 9.54810 11.05341 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.007020 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.689798 B = 3987.478876 C = 4045.654089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.480 5.480 3 C 0.109 3.891 4 C 0.275 3.725 5 H 0.047 0.953 6 N -0.800 5.800 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.085 3.915 10 N -0.845 5.845 11 Si 0.887 3.113 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.241 4.241 16 C -0.097 4.097 17 C -0.080 4.080 18 C -0.156 4.156 19 C -0.119 4.119 20 C -0.128 4.128 21 C 0.084 3.916 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.325 0.675 26 H 0.301 0.699 27 H 0.258 0.742 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -11.670 -2.152 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.163 5.163 3 C -0.001 4.001 4 C 0.164 3.836 5 H 0.065 0.935 6 N -0.325 5.325 7 C -0.574 4.574 8 H 0.074 0.926 9 C -0.122 4.122 10 N -0.479 5.479 11 Si 0.715 3.285 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.265 4.265 16 C -0.103 4.103 17 C -0.098 4.098 18 C -0.176 4.176 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.023 4.023 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.802 -10.817 -2.069 11.042 hybrid contribution 0.516 -0.555 0.904 1.180 sum 1.318 -11.372 -1.164 11.507 Atomic orbital electron populations 1.21870 0.77802 1.03940 1.02589 1.43951 1.05766 1.04049 1.62557 1.23005 0.90358 0.91275 0.95510 1.17967 0.92820 0.77810 0.94976 0.93545 1.59296 1.15271 1.55110 1.02872 1.20784 1.47302 0.99094 0.90186 0.92607 1.24940 0.94213 0.96610 0.96479 1.70101 1.40149 1.07578 1.30101 0.86694 0.77803 0.78747 0.85274 1.20497 1.21189 1.20009 1.21225 0.95789 0.91744 1.17763 1.19301 0.92002 0.93946 1.05014 1.20195 0.97629 0.92108 0.99912 1.20461 0.96133 0.95275 1.05725 1.20597 0.92368 0.98193 1.02700 1.19925 0.98941 0.89466 1.06508 1.18354 0.90652 0.88330 1.04934 0.91980 0.91054 0.88790 0.86265 0.88909 0.93216 0.84509 0.86757 0.86888 0.86645 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.48 59.85 0.63 1.91 16 2 N -0.48 -9.44 3.18 -117.19 -0.37 -9.81 16 3 C 0.11 2.36 5.79 -81.77 -0.47 1.88 16 4 C 0.28 6.62 2.67 -70.01 -0.19 6.43 16 5 H 0.05 1.20 7.44 -51.93 -0.39 0.82 16 6 N -0.80 -18.36 8.35 -6.65 -0.06 -18.42 16 7 C -0.53 -14.28 8.67 -34.44 -0.30 -14.58 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.09 2.30 5.39 -17.82 -0.10 2.20 16 10 N -0.85 -23.74 12.77 55.43 0.71 -23.03 16 11 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C -0.24 -5.01 10.36 -37.67 -0.39 -5.40 16 16 C -0.10 -1.90 6.37 -105.14 -0.67 -2.57 16 17 C -0.08 -1.32 10.05 -39.64 -0.40 -1.72 16 18 C -0.16 -2.27 9.97 -39.94 -0.40 -2.67 16 19 C -0.12 -1.70 10.01 -39.54 -0.40 -2.10 16 20 C -0.13 -2.03 9.89 -39.43 -0.39 -2.42 16 21 C 0.08 1.59 6.80 -83.99 -0.57 1.02 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 24 H 0.09 1.63 7.66 -51.93 -0.40 1.23 16 25 H 0.32 7.23 8.12 -39.29 -0.32 6.91 16 26 H 0.30 6.20 9.02 -39.29 -0.35 5.85 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.14 2.68 7.51 -52.49 -0.39 2.29 16 29 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.50 7.90 -52.49 -0.41 1.09 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -29.69 275.47 -8.14 -37.83 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.91 Total: 11.42 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.64 Total: -18.00 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.28 Total: -51.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.69 -8.14 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104495364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.284 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds