Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36822 * 125.06578 * 2 1 4 4 C 1.50705 * 125.03421 * 359.97438 * 3 2 1 5 5 H 1.08998 * 109.47205 * 335.26040 * 4 3 2 6 6 N 1.46905 * 109.46892 * 215.26420 * 4 3 2 7 7 C 1.50693 * 109.47041 * 95.26451 * 4 3 2 8 8 H 1.08003 * 120.00121 * 0.02562 * 7 4 3 9 9 C 1.37880 * 120.00000 * 179.97438 * 7 4 3 10 10 N 1.31505 * 119.99810 * 0.02562 * 9 7 4 11 11 Si 1.86797 * 119.99928 * 179.97438 * 9 7 4 12 12 H 1.48508 * 109.47051 * 90.00465 * 11 9 7 13 13 H 1.48503 * 109.47319 * 210.00298 * 11 9 7 14 14 H 1.48498 * 109.47515 * 330.00499 * 11 9 7 15 15 C 1.34244 * 109.93217 * 180.02562 * 3 2 1 16 16 C 1.46483 * 106.99461 * 359.97438 * 15 3 2 17 17 C 1.39630 * 134.02940 * 180.02562 * 16 15 3 18 18 C 1.36631 * 119.76634 * 179.97438 * 17 16 15 19 19 C 1.38835 * 120.52274 * 0.04205 * 18 17 16 20 20 C 1.37748 * 120.67027 * 359.93627 * 19 18 17 21 21 C 1.37693 * 125.05863 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46991 * 84.84032 * 1 2 3 23 23 H 1.09001 * 109.47514 * 204.83820 * 1 2 3 24 24 H 1.08998 * 109.47019 * 324.83996 * 1 2 3 25 25 H 1.00898 * 110.99875 * 295.28521 * 6 4 3 26 26 H 1.00899 * 110.99835 * 59.24484 * 6 4 3 27 27 H 0.97006 * 120.00211 * 179.97438 * 10 9 7 28 28 H 1.07997 * 126.49934 * 180.02562 * 15 3 2 29 29 H 1.08003 * 120.11618 * 359.72608 * 17 16 15 30 30 H 1.08000 * 119.73649 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.65981 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.10948 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1199 0.0000 4 6 1.7381 2.5369 -0.0006 5 1 0.7370 2.5608 -0.4310 6 7 2.6351 3.3821 -0.8001 7 6 1.6892 3.0540 1.4141 8 1 1.9990 2.4200 2.2318 9 6 1.2499 4.3367 1.6644 10 7 0.8732 5.1088 0.6687 11 14 1.1886 4.9774 3.4180 12 1 2.4837 5.6211 3.7554 13 1 0.0936 5.9726 3.5435 14 1 0.9399 3.8478 4.3494 15 6 3.5469 0.7694 -0.0006 16 6 3.5945 -0.6947 -0.0003 17 6 4.6294 -1.6320 -0.0002 18 6 4.3360 -2.9664 0.0005 19 6 3.0165 -3.3982 0.0003 20 6 1.9802 -2.4907 0.0006 21 6 2.2559 -1.1271 -0.0005 22 1 -0.3633 0.0924 -1.0235 23 1 -0.3634 -0.9326 0.4317 24 1 -0.3633 0.8402 0.5918 25 1 3.5501 3.4382 -0.3786 26 1 2.6945 3.0484 -1.7505 27 1 0.5637 6.0111 0.8449 28 1 4.3937 1.4397 -0.0003 29 1 5.6582 -1.3034 -0.0048 30 1 5.1368 -3.6910 0.0002 31 1 2.8004 -4.4564 0.0005 32 1 0.9571 -2.8367 0.0009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104495364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = 41.128231 kcal Electronic energy + Delta-G solvation = -15547.614446 eV Core-core repulsion = 13086.567129 eV Total energy + Delta-G solvation = -2461.047317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18187 -38.21880 -36.14008 -33.90746 -33.12782 -31.15650 -29.49457 -28.00968 -26.95778 -24.71934 -22.39181 -22.31719 -20.35995 -18.55108 -17.87547 -17.21327 -16.69424 -16.19151 -15.90321 -15.80243 -15.03303 -14.69240 -14.52572 -14.14130 -13.74658 -13.69609 -13.17262 -13.13677 -12.77656 -12.70359 -12.40130 -12.13300 -11.85646 -11.63296 -11.24742 -10.61907 -10.48061 -9.19313 -8.86984 -8.43608 -8.04124 -6.27674 0.30892 0.79979 1.40771 1.42549 1.51359 1.88776 2.06028 2.45005 3.07395 3.19122 3.85255 3.96709 4.06204 4.22991 4.36143 4.38594 4.41411 4.59376 4.62631 4.73958 4.88134 4.91243 5.08526 5.21183 5.35666 5.63393 5.69164 5.76161 5.93996 6.01455 6.13795 6.38694 6.54516 6.59866 6.98083 7.16851 7.45306 8.98133 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.007020 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.689798 B = 3987.478876 C = 4045.654089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.488 5.488 3 C 0.081 3.919 4 C 0.286 3.714 5 H 0.020 0.980 6 N -0.808 5.808 7 C -0.546 4.546 8 H 0.040 0.960 9 C 0.042 3.958 10 N -0.874 5.874 11 Si 0.948 3.052 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.275 1.275 15 C -0.248 4.248 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.137 4.137 21 C 0.065 3.935 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.327 0.673 26 H 0.313 0.687 27 H 0.259 0.741 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -14.196 -1.743 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.172 5.172 3 C -0.030 4.030 4 C 0.174 3.826 5 H 0.038 0.962 6 N -0.334 5.334 7 C -0.584 4.584 8 H 0.058 0.942 9 C -0.162 4.162 10 N -0.510 5.510 11 Si 0.774 3.226 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.200 1.200 15 C -0.272 4.272 16 C -0.136 4.136 17 C -0.110 4.110 18 C -0.169 4.169 19 C -0.125 4.125 20 C -0.158 4.158 21 C -0.041 4.041 22 H 0.093 0.907 23 H 0.120 0.880 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.253 -13.361 -1.662 13.522 hybrid contribution 0.434 0.052 0.742 0.861 sum 1.686 -13.308 -0.919 13.446 Atomic orbital electron populations 1.22004 0.76425 1.04611 1.03326 1.44057 1.06723 1.03794 1.62590 1.22500 0.91157 0.90896 0.98415 1.17531 0.91826 0.79679 0.93542 0.96201 1.59144 1.15186 1.55512 1.03564 1.20960 1.47075 0.99179 0.91213 0.94201 1.25600 0.93885 0.96772 0.99983 1.70203 1.41064 1.07811 1.31880 0.85741 0.77888 0.78064 0.80913 1.20202 1.20453 1.19991 1.21363 0.95420 0.93182 1.17281 1.19557 0.93505 0.93464 1.07118 1.20507 0.97796 0.92755 0.99935 1.20942 0.97548 0.94959 1.03425 1.21150 0.91746 0.99951 0.99702 1.20328 1.00962 0.88186 1.06297 1.18797 0.90412 0.89314 1.05587 0.90694 0.88015 0.90952 0.86033 0.87606 0.93182 0.84668 0.85302 0.83272 0.82638 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 10.48 127.77 1.34 3.84 16 2 N -0.49 -19.38 3.18 -524.68 -1.67 -21.05 16 3 C 0.08 3.63 5.79 40.87 0.24 3.87 16 4 C 0.29 14.31 2.67 43.42 0.12 14.42 16 5 H 0.02 1.09 7.44 -2.39 -0.02 1.08 16 6 N -0.81 -38.39 8.35 -174.95 -1.46 -39.85 16 7 C -0.55 -30.09 8.67 25.60 0.22 -29.87 16 8 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 9 C 0.04 2.32 5.39 84.66 0.46 2.78 16 10 N -0.87 -50.11 12.77 21.45 0.27 -49.84 16 11 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C -0.25 -10.56 10.36 23.51 0.24 -10.32 16 16 C -0.13 -5.06 6.37 -20.20 -0.13 -5.19 16 17 C -0.09 -2.83 10.05 22.23 0.22 -2.60 16 18 C -0.15 -3.72 9.97 22.04 0.22 -3.50 16 19 C -0.11 -2.55 10.01 22.30 0.22 -2.32 16 20 C -0.14 -3.94 9.89 22.37 0.22 -3.72 16 21 C 0.06 2.39 6.80 39.03 0.27 2.66 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.10 2.57 7.84 -2.39 -0.02 2.56 16 24 H 0.07 2.62 7.66 -2.39 -0.02 2.60 16 25 H 0.33 15.10 8.12 -89.70 -0.73 14.37 16 26 H 0.31 13.36 9.02 -89.69 -0.81 12.55 16 27 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.14 5.52 7.51 -2.91 -0.02 5.50 16 29 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.14 3.14 7.90 -2.91 -0.02 3.11 16 Total: -1.00 -64.77 275.47 2.41 -62.36 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.40 Total: 32.80 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.64 Total: -29.95 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -2.85 Total: -110.74 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.77 2.41 -62.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104495364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.486 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds