Wall clock time and date at job start Mon Mar 30 2020 03:17:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86807 * 119.99614 * 2 1
4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1
5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1
6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1
7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1
9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1
10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2
11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7
12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9
13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10
14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11
15 15 H 1.08995 * 109.47522 * 59.99754 * 14 13 12
16 16 O 1.42908 * 109.47050 * 299.99497 * 14 13 12
17 17 C 1.53008 * 109.47255 * 180.02562 * 14 13 12
18 18 O 1.42897 * 109.47145 * 184.99468 * 17 14 13
19 19 C 1.46903 * 111.26992 * 296.76086 * 12 11 10
20 20 C 1.47080 * 120.88364 * 206.56279 * 9 7 2
21 21 H 0.96993 * 120.00972 * 359.97438 * 1 2 3
22 22 H 1.09000 * 109.63087 * 248.51914 * 10 9 7
23 23 H 1.08996 * 109.63194 * 9.10611 * 10 9 7
24 24 H 1.09005 * 109.64569 * 294.08201 * 11 10 9
25 25 H 1.08993 * 109.45072 * 173.95996 * 11 10 9
26 26 H 1.09004 * 109.47199 * 74.30771 * 13 12 11
27 27 H 1.09004 * 109.47300 * 194.30103 * 13 12 11
28 28 H 0.96697 * 114.00199 * 300.00414 * 16 14 13
29 29 H 1.09001 * 109.46597 * 304.99814 * 17 14 13
30 30 H 1.08999 * 109.47200 * 64.99873 * 17 14 13
31 31 H 0.96692 * 114.00024 * 179.97438 * 18 17 14
32 32 H 1.09001 * 109.49186 * 303.14219 * 19 12 11
33 33 H 1.08999 * 109.49207 * 183.06673 * 19 12 11
34 34 H 1.09004 * 109.62440 * 350.90141 * 20 9 7
35 35 H 1.09004 * 109.62907 * 111.27775 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 2.4048 2.1001 -1.3960
5 1 1.4968 2.6242 0.7907
6 1 3.5909 1.4155 0.6053
7 6 2.0104 -1.2021 -0.0005
8 1 3.0541 -1.2230 0.2760
9 7 1.3732 -2.3604 -0.3571
10 6 0.2096 -2.3359 -1.2565
11 6 0.4569 -3.3417 -2.3921
12 7 0.7680 -4.6565 -1.8155
13 6 0.8391 -5.6862 -2.8608
14 6 -0.3545 -5.5365 -3.8062
15 1 -0.3315 -4.5490 -4.2669
16 8 -1.5687 -5.6898 -3.0684
17 6 -0.2808 -6.6094 -4.8946
18 8 -1.3287 -6.3986 -5.8430
19 6 2.0102 -4.6146 -1.0325
20 6 1.8303 -3.6617 0.1539
21 1 -0.4851 0.8399 0.0004
22 1 -0.6867 -2.6167 -0.7035
23 1 0.0888 -1.3354 -1.6717
24 1 1.2942 -3.0054 -3.0036
25 1 -0.4375 -3.4181 -3.0103
26 1 1.7652 -5.5694 -3.4236
27 1 0.8161 -6.6739 -2.4001
28 1 -1.6573 -6.5474 -2.6306
29 1 0.6835 -6.5494 -5.3991
30 1 -0.3933 -7.5945 -4.4419
31 1 -1.3427 -7.0434 -6.5634
32 1 2.8259 -4.2606 -1.6630
33 1 2.2420 -5.6141 -0.6644
34 1 2.7815 -3.5379 0.6717
35 1 1.0884 -4.0657 0.8427
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000133712792.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:17:41
Heat of formation + Delta-G solvation = -62.174417 kcal
Electronic energy + Delta-G solvation = -16945.759171 eV
Core-core repulsion = 14172.923396 eV
Total energy + Delta-G solvation = -2772.835776 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 230.142 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.92399 -37.28908 -35.76338 -34.09882 -31.50699 -29.85369 -29.81134 -26.81745
-24.36522 -23.08005 -22.28673 -20.89056 -19.04587 -17.54302 -16.84485 -16.28066
-16.06905 -15.10348 -14.54694 -14.27035 -14.15043 -13.59703 -13.38646 -13.23180
-12.85466 -12.67552 -12.49986 -11.56118 -11.36383 -11.07737 -10.81480 -10.66631
-10.40561 -10.27128 -10.24497 -10.02938 -9.82776 -9.64632 -9.46448 -8.45234
-7.75541 -6.61533 -5.72646 -3.14051 3.40847 3.47502 3.49228 3.79976
4.46715 4.54303 4.62165 4.90218 5.04719 5.21012 5.27824 5.35248
5.45486 5.50491 5.66089 5.92460 5.97934 6.10945 6.17177 6.30260
6.39326 6.60811 6.77534 6.97572 7.31648 7.41784 7.61974 7.73754
7.76846 7.85646 7.89681 8.48814 9.26432 9.90067 10.49053 11.35923
Molecular weight = 230.14amu
Principal moments of inertia in cm(-1)
A = 0.042721 B = 0.006214 C = 0.005846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.261277 B = 4504.829574 C = 4788.761244
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.001 3.999
3 Si 0.902 3.098
4 H -0.288 1.288
5 H -0.291 1.291
6 H -0.279 1.279
7 C -0.253 4.253
8 H 0.066 0.934
9 N -0.596 5.596
10 C 0.180 3.820
11 C 0.029 3.971
12 N -0.521 5.521
13 C 0.025 3.975
14 C 0.105 3.895
15 H 0.108 0.892
16 O -0.536 6.536
17 C 0.045 3.955
18 O -0.563 6.563
19 C 0.044 3.956
20 C 0.149 3.851
21 H 0.254 0.746
22 H 0.028 0.972
23 H 0.087 0.913
24 H 0.021 0.979
25 H 0.072 0.928
26 H 0.034 0.966
27 H 0.071 0.929
28 H 0.368 0.632
29 H 0.051 0.949
30 H 0.048 0.952
31 H 0.375 0.625
32 H 0.026 0.974
33 H 0.060 0.940
34 H 0.055 0.945
35 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.345 -13.963 -8.612 16.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.197 4.197
3 Si 0.732 3.268
4 H -0.216 1.216
5 H -0.217 1.217
6 H -0.205 1.205
7 C -0.382 4.382
8 H 0.083 0.917
9 N -0.320 5.320
10 C 0.054 3.946
11 C -0.100 4.100
12 N -0.246 5.246
13 C -0.104 4.104
14 C 0.045 3.955
15 H 0.126 0.874
16 O -0.340 6.340
17 C -0.034 4.034
18 O -0.367 6.367
19 C -0.086 4.086
20 C 0.022 3.978
21 H 0.064 0.936
22 H 0.046 0.954
23 H 0.105 0.895
24 H 0.039 0.961
25 H 0.090 0.910
26 H 0.053 0.947
27 H 0.090 0.910
28 H 0.215 0.785
29 H 0.069 0.931
30 H 0.066 0.934
31 H 0.221 0.779
32 H 0.045 0.955
33 H 0.078 0.922
34 H 0.073 0.927
35 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges 0.637 -12.804 -8.076 15.151
hybrid contribution 1.485 -0.080 -0.795 1.686
sum 2.122 -12.884 -8.871 15.786
Atomic orbital electron populations
1.70038 1.05194 1.25443 1.53985 1.25024 0.95286 0.98328 1.01102
0.86279 0.79114 0.83866 0.77546 1.21560 1.21748 1.20463 1.19209
0.92658 0.84936 1.41424 0.91674 1.44170 1.34510 1.01121 1.52160
1.20943 0.88889 0.96543 0.88223 1.23112 0.98826 0.89090 0.98986
1.61964 1.34220 1.05906 1.22517 1.22711 0.96509 0.97488 0.93674
1.22038 0.84949 0.99281 0.89223 0.87404 1.86688 1.38420 1.39999
1.68856 1.22952 0.90281 0.98663 0.91461 1.86587 1.53326 1.57177
1.39620 1.22647 0.89576 0.99301 0.97030 1.20953 0.97730 0.86592
0.92501 0.93608 0.95363 0.89454 0.96115 0.90998 0.94744 0.91014
0.78540 0.93062 0.93421 0.77873 0.95543 0.92204 0.92702 0.95664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.99 11.16 55.49 0.62 -26.37 16
2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16
3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16
4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
7 C -0.25 -7.15 9.63 -15.06 -0.15 -7.29 16
8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16
9 N -0.60 -15.66 3.03 -171.74 -0.52 -16.18 16
10 C 0.18 4.58 5.45 -3.36 -0.02 4.57 16
11 C 0.03 0.60 5.06 -3.46 -0.02 0.58 16
12 N -0.52 -9.56 4.64 -234.03 -1.09 -10.64 16
13 C 0.03 0.35 4.93 -3.83 -0.02 0.33 16
14 C 0.10 1.44 2.54 -26.73 -0.07 1.37 16
15 H 0.11 1.71 6.18 -51.93 -0.32 1.39 16
16 O -0.54 -8.22 12.98 -40.11 -0.52 -8.74 16
17 C 0.05 0.47 6.68 37.16 0.25 0.72 16
18 O -0.56 -6.43 13.62 -40.11 -0.55 -6.98 16
19 C 0.04 0.81 5.58 -3.70 -0.02 0.79 16
20 C 0.15 3.27 6.69 -3.61 -0.02 3.25 16
21 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16
22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
23 H 0.09 2.45 6.11 -51.93 -0.32 2.13 16
24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.07 1.44 5.58 -51.93 -0.29 1.15 16
26 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16
27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
28 H 0.37 4.20 9.04 45.56 0.41 4.61 16
29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
31 H 0.38 2.30 9.12 45.56 0.42 2.72 16
32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16
34 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16
35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
LS Contribution 281.20 15.07 4.24 4.24
Total: -1.00 -33.51 281.20 -6.86 -40.37
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: -3.86 Total: 2.96 kcal
Atomic # 6 Polarization: 4.40 SS G_CDS: -0.15 Total: 4.25 kcal
Atomic # 7 Polarization: -52.21 SS G_CDS: -0.99 Total: -53.20 kcal
Atomic # 8 Polarization: -14.65 SS G_CDS: -1.07 Total: -15.72 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -33.51 -6.86 -40.37 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000133712792.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.804 kcal
(2) G-P(sol) polarization free energy of solvation -33.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds