Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 16 16 O 1.42908 * 109.47050 * 299.99497 * 14 13 12 17 17 C 1.53008 * 109.47255 * 180.02562 * 14 13 12 18 18 O 1.42897 * 109.47145 * 184.99468 * 17 14 13 19 19 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 20 20 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 21 21 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 23 23 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 24 24 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 25 25 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 26 26 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 27 27 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 28 28 H 0.96697 * 114.00199 * 300.00414 * 16 14 13 29 29 H 1.09001 * 109.46597 * 304.99814 * 17 14 13 30 30 H 1.08999 * 109.47200 * 64.99873 * 17 14 13 31 31 H 0.96692 * 114.00024 * 179.97438 * 18 17 14 32 32 H 1.09001 * 109.49186 * 303.14219 * 19 12 11 33 33 H 1.08999 * 109.49207 * 183.06673 * 19 12 11 34 34 H 1.09004 * 109.62440 * 350.90141 * 20 9 7 35 35 H 1.09004 * 109.62907 * 111.27775 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 1 -0.3315 -4.5490 -4.2669 16 8 -1.5687 -5.6898 -3.0684 17 6 -0.2808 -6.6094 -4.8946 18 8 -1.3287 -6.3986 -5.8430 19 6 2.0102 -4.6146 -1.0325 20 6 1.8303 -3.6617 0.1539 21 1 -0.4851 0.8399 0.0004 22 1 -0.6867 -2.6167 -0.7035 23 1 0.0888 -1.3354 -1.6717 24 1 1.2942 -3.0054 -3.0036 25 1 -0.4375 -3.4181 -3.0103 26 1 1.7652 -5.5694 -3.4236 27 1 0.8161 -6.6739 -2.4001 28 1 -1.6573 -6.5474 -2.6306 29 1 0.6835 -6.5494 -5.3991 30 1 -0.3933 -7.5945 -4.4419 31 1 -1.3427 -7.0434 -6.5634 32 1 2.8259 -4.2606 -1.6630 33 1 2.2420 -5.6141 -0.6644 34 1 2.7815 -3.5379 0.6717 35 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133712792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -62.174417 kcal Electronic energy + Delta-G solvation = -16945.759171 eV Core-core repulsion = 14172.923396 eV Total energy + Delta-G solvation = -2772.835776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.92399 -37.28908 -35.76338 -34.09882 -31.50699 -29.85369 -29.81134 -26.81745 -24.36522 -23.08005 -22.28673 -20.89056 -19.04587 -17.54302 -16.84485 -16.28066 -16.06905 -15.10348 -14.54694 -14.27035 -14.15043 -13.59703 -13.38646 -13.23180 -12.85466 -12.67552 -12.49986 -11.56118 -11.36383 -11.07737 -10.81480 -10.66631 -10.40561 -10.27128 -10.24497 -10.02938 -9.82776 -9.64632 -9.46448 -8.45234 -7.75541 -6.61533 -5.72646 -3.14051 3.40847 3.47502 3.49228 3.79976 4.46715 4.54303 4.62165 4.90218 5.04719 5.21012 5.27824 5.35248 5.45486 5.50491 5.66089 5.92460 5.97934 6.10945 6.17177 6.30260 6.39326 6.60811 6.77534 6.97572 7.31648 7.41784 7.61974 7.73754 7.76846 7.85646 7.89681 8.48814 9.26432 9.90067 10.49053 11.35923 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.006214 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.261277 B = 4504.829574 C = 4788.761244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.180 3.820 11 C 0.029 3.971 12 N -0.521 5.521 13 C 0.025 3.975 14 C 0.105 3.895 15 H 0.108 0.892 16 O -0.536 6.536 17 C 0.045 3.955 18 O -0.563 6.563 19 C 0.044 3.956 20 C 0.149 3.851 21 H 0.254 0.746 22 H 0.028 0.972 23 H 0.087 0.913 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.368 0.632 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.375 0.625 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -13.963 -8.612 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.100 4.100 12 N -0.246 5.246 13 C -0.104 4.104 14 C 0.045 3.955 15 H 0.126 0.874 16 O -0.340 6.340 17 C -0.034 4.034 18 O -0.367 6.367 19 C -0.086 4.086 20 C 0.022 3.978 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.215 0.785 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.637 -12.804 -8.076 15.151 hybrid contribution 1.485 -0.080 -0.795 1.686 sum 2.122 -12.884 -8.871 15.786 Atomic orbital electron populations 1.70038 1.05194 1.25443 1.53985 1.25024 0.95286 0.98328 1.01102 0.86279 0.79114 0.83866 0.77546 1.21560 1.21748 1.20463 1.19209 0.92658 0.84936 1.41424 0.91674 1.44170 1.34510 1.01121 1.52160 1.20943 0.88889 0.96543 0.88223 1.23112 0.98826 0.89090 0.98986 1.61964 1.34220 1.05906 1.22517 1.22711 0.96509 0.97488 0.93674 1.22038 0.84949 0.99281 0.89223 0.87404 1.86688 1.38420 1.39999 1.68856 1.22952 0.90281 0.98663 0.91461 1.86587 1.53326 1.57177 1.39620 1.22647 0.89576 0.99301 0.97030 1.20953 0.97730 0.86592 0.92501 0.93608 0.95363 0.89454 0.96115 0.90998 0.94744 0.91014 0.78540 0.93062 0.93421 0.77873 0.95543 0.92204 0.92702 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 11.16 55.49 0.62 -26.37 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -7.15 9.63 -15.06 -0.15 -7.29 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -15.66 3.03 -171.74 -0.52 -16.18 16 10 C 0.18 4.58 5.45 -3.36 -0.02 4.57 16 11 C 0.03 0.60 5.06 -3.46 -0.02 0.58 16 12 N -0.52 -9.56 4.64 -234.03 -1.09 -10.64 16 13 C 0.03 0.35 4.93 -3.83 -0.02 0.33 16 14 C 0.10 1.44 2.54 -26.73 -0.07 1.37 16 15 H 0.11 1.71 6.18 -51.93 -0.32 1.39 16 16 O -0.54 -8.22 12.98 -40.11 -0.52 -8.74 16 17 C 0.05 0.47 6.68 37.16 0.25 0.72 16 18 O -0.56 -6.43 13.62 -40.11 -0.55 -6.98 16 19 C 0.04 0.81 5.58 -3.70 -0.02 0.79 16 20 C 0.15 3.27 6.69 -3.61 -0.02 3.25 16 21 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 2.45 6.11 -51.93 -0.32 2.13 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 1.44 5.58 -51.93 -0.29 1.15 16 26 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.37 4.20 9.04 45.56 0.41 4.61 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.38 2.30 9.12 45.56 0.42 2.72 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 281.20 15.07 4.24 4.24 Total: -1.00 -33.51 281.20 -6.86 -40.37 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.86 Total: 2.96 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.15 Total: 4.25 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.99 Total: -53.20 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.07 Total: -15.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.51 -6.86 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133712792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.804 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds