Wall clock time and date at job start Mon Mar 30 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 16 16 O 1.42908 * 109.47050 * 299.99497 * 14 13 12 17 17 C 1.53008 * 109.47255 * 180.02562 * 14 13 12 18 18 O 1.42897 * 109.47145 * 184.99468 * 17 14 13 19 19 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 20 20 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 21 21 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 23 23 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 24 24 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 25 25 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 26 26 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 27 27 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 28 28 H 0.96697 * 114.00199 * 300.00414 * 16 14 13 29 29 H 1.09001 * 109.46597 * 304.99814 * 17 14 13 30 30 H 1.08999 * 109.47200 * 64.99873 * 17 14 13 31 31 H 0.96692 * 114.00024 * 179.97438 * 18 17 14 32 32 H 1.09001 * 109.49186 * 303.14219 * 19 12 11 33 33 H 1.08999 * 109.49207 * 183.06673 * 19 12 11 34 34 H 1.09004 * 109.62440 * 350.90141 * 20 9 7 35 35 H 1.09004 * 109.62907 * 111.27775 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 1 -0.3315 -4.5490 -4.2669 16 8 -1.5687 -5.6898 -3.0684 17 6 -0.2808 -6.6094 -4.8946 18 8 -1.3287 -6.3986 -5.8430 19 6 2.0102 -4.6146 -1.0325 20 6 1.8303 -3.6617 0.1539 21 1 -0.4851 0.8399 0.0004 22 1 -0.6867 -2.6167 -0.7035 23 1 0.0888 -1.3354 -1.6717 24 1 1.2942 -3.0054 -3.0036 25 1 -0.4375 -3.4181 -3.0103 26 1 1.7652 -5.5694 -3.4236 27 1 0.8161 -6.6739 -2.4001 28 1 -1.6573 -6.5474 -2.6306 29 1 0.6835 -6.5494 -5.3991 30 1 -0.3933 -7.5945 -4.4419 31 1 -1.3427 -7.0434 -6.5634 32 1 2.8259 -4.2606 -1.6630 33 1 2.2420 -5.6141 -0.6644 34 1 2.7815 -3.5379 0.6717 35 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133712792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:40 Heat of formation + Delta-G solvation = -92.096579 kcal Electronic energy + Delta-G solvation = -16947.056694 eV Core-core repulsion = 14172.923396 eV Total energy + Delta-G solvation = -2774.133298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23258 -38.58005 -36.83530 -35.79564 -33.35705 -31.64101 -31.11734 -28.43855 -25.91140 -24.66583 -23.96079 -22.13537 -20.80864 -18.81251 -18.29992 -17.52396 -17.16261 -16.79763 -16.14253 -15.79165 -15.51319 -15.28443 -14.93542 -14.81023 -14.27899 -14.15203 -13.56706 -13.23233 -12.99653 -12.76244 -12.61251 -12.35366 -12.10243 -12.03226 -11.85269 -11.48070 -11.28059 -11.02124 -10.80897 -10.59391 -9.22631 -8.69983 -7.88217 -5.33817 1.45510 1.46913 1.56729 2.49840 2.78778 3.25886 3.35044 3.62907 3.67841 4.01692 4.11101 4.23230 4.31622 4.33945 4.45023 4.51826 4.59358 4.61876 4.66475 4.75978 4.89142 5.03859 5.11582 5.19443 5.35838 5.59694 5.66383 6.16562 6.26370 6.36278 6.91043 6.98158 7.11338 7.82538 8.37531 9.18708 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.006214 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.261277 B = 4504.829574 C = 4788.761244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.188 3.812 11 C 0.051 3.949 12 N -0.534 5.534 13 C 0.030 3.970 14 C 0.102 3.898 15 H 0.078 0.922 16 O -0.564 6.564 17 C 0.053 3.947 18 O -0.591 6.591 19 C 0.055 3.945 20 C 0.142 3.858 21 H 0.250 0.750 22 H -0.006 1.006 23 H 0.053 0.947 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.384 0.616 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.025 0.975 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -15.897 -9.450 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.079 4.079 12 N -0.259 5.259 13 C -0.098 4.098 14 C 0.042 3.958 15 H 0.096 0.904 16 O -0.371 6.371 17 C -0.026 4.026 18 O -0.400 6.400 19 C -0.074 4.074 20 C 0.016 3.984 21 H 0.059 0.941 22 H 0.012 0.988 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.233 0.767 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.158 -14.800 -8.929 17.419 hybrid contribution 0.985 0.438 -0.509 1.192 sum 3.143 -14.362 -9.437 17.470 Atomic orbital electron populations 1.70212 1.06849 1.25909 1.55466 1.25854 0.96056 1.01716 1.01276 0.85197 0.78232 0.79316 0.77376 1.21320 1.22078 1.18957 1.19588 0.93071 0.86080 1.40818 0.91196 1.44450 1.34414 1.02276 1.52762 1.20652 0.87773 0.96198 0.89167 1.22675 0.98893 0.89643 0.96658 1.61869 1.34535 1.05218 1.24328 1.22786 0.97150 0.97010 0.92823 1.22011 0.84341 0.99302 0.90114 0.90417 1.86645 1.39352 1.41581 1.69503 1.22847 0.90844 0.98305 0.90572 1.86521 1.53909 1.58741 1.40794 1.22501 0.89376 1.00154 0.95380 1.21154 0.97475 0.85537 0.94207 0.94069 0.98815 0.92849 0.96567 0.90627 0.93296 0.87853 0.76714 0.91226 0.90686 0.75292 0.95711 0.88202 0.91911 0.96755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 11.16 21.65 0.24 -57.93 16 2 C -0.05 -3.13 4.93 84.86 0.42 -2.71 16 3 Si 0.97 46.14 29.59 68.60 2.03 48.17 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.27 -15.21 9.63 84.03 0.81 -14.40 16 8 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 9 N -0.61 -32.85 3.03 -697.26 -2.11 -34.96 16 10 C 0.19 9.97 5.45 86.50 0.47 10.44 16 11 C 0.05 2.12 5.06 86.54 0.44 2.56 16 12 N -0.53 -18.63 4.64 -894.33 -4.15 -22.78 16 13 C 0.03 0.73 4.93 86.30 0.43 1.16 16 14 C 0.10 2.58 2.54 30.59 0.08 2.66 16 15 H 0.08 2.42 6.18 -2.39 -0.01 2.41 16 16 O -0.56 -16.54 12.98 -144.32 -1.87 -18.41 16 17 C 0.05 0.91 6.68 71.98 0.48 1.39 16 18 O -0.59 -12.14 13.62 -144.32 -1.97 -14.11 16 19 C 0.05 1.87 5.58 86.38 0.48 2.36 16 20 C 0.14 6.14 6.69 86.35 0.58 6.72 16 21 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.05 3.15 6.11 -2.39 -0.01 3.14 16 24 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.08 3.10 5.58 -2.39 -0.01 3.08 16 26 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.38 7.93 9.04 -74.06 -0.67 7.26 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.40 3.82 9.12 -74.06 -0.68 3.14 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.10 2.65 8.11 -2.39 -0.02 2.63 16 34 H 0.06 2.56 7.95 -2.38 -0.02 2.54 16 35 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -74.32 281.20 -3.91 -78.23 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.25 Total: 11.62 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 4.18 Total: 10.18 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.03 Total: -115.68 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -3.84 Total: -32.52 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.32 -3.91 -78.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133712792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.864 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds