Wall clock time and date at job start Mon Mar 30 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47021 * 269.99499 * 3 2 1 5 5 H 1.48499 * 109.47422 * 29.99542 * 3 2 1 6 6 H 1.48499 * 109.47371 * 149.99647 * 3 2 1 7 7 C 1.38811 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00492 * 192.16572 * 7 2 1 9 9 N 1.36935 * 119.99636 * 12.44375 * 7 2 1 10 10 C 1.47081 * 120.88284 * 32.15132 * 9 7 2 11 11 C 1.53695 * 108.27625 * 128.75261 * 10 9 7 12 12 N 1.46901 * 109.25832 * 54.08537 * 11 10 9 13 13 C 1.46893 * 111.00344 * 172.60426 * 12 11 10 14 14 C 1.53002 * 109.47024 * 47.78494 * 13 12 11 15 15 H 1.08995 * 109.47167 * 304.10485 * 14 13 12 16 16 O 1.42902 * 109.47100 * 64.10658 * 14 13 12 17 17 C 1.52998 * 109.47158 * 184.10561 * 14 13 12 18 18 O 1.42903 * 109.47363 * 174.99535 * 17 14 13 19 19 C 1.46899 * 111.26991 * 296.75848 * 12 11 10 20 20 C 1.47086 * 120.88041 * 212.43146 * 9 7 2 21 21 H 0.97003 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.63443 * 248.51966 * 10 9 7 23 23 H 1.09003 * 109.62731 * 9.10609 * 10 9 7 24 24 H 1.09002 * 109.64920 * 294.08383 * 11 10 9 25 25 H 1.08999 * 109.44528 * 173.95933 * 11 10 9 26 26 H 1.09005 * 109.47296 * 167.78134 * 13 12 11 27 27 H 1.08992 * 109.47348 * 287.78326 * 13 12 11 28 28 H 0.96693 * 114.00097 * 60.00168 * 16 14 13 29 29 H 1.08995 * 109.47585 * 294.99654 * 17 14 13 30 30 H 1.09000 * 109.47262 * 55.00249 * 17 14 13 31 31 H 0.96700 * 114.00248 * 179.97438 * 18 17 14 32 32 H 1.08997 * 109.49119 * 303.14472 * 19 12 11 33 33 H 1.09001 * 109.49526 * 183.06014 * 19 12 11 34 34 H 1.08990 * 109.62610 * 350.89482 * 20 9 7 35 35 H 1.08994 * 109.62543 * 111.48099 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0721 -1.2126 0.1976 9 7 1.3497 -2.3742 -0.2545 10 6 0.1963 -2.4077 -1.1664 11 6 0.4314 -3.5202 -2.2004 12 7 0.7057 -4.7822 -1.5002 13 6 0.7632 -5.9063 -2.4441 14 6 1.6529 -5.5307 -3.6309 15 1 1.2807 -4.6140 -4.0882 16 8 2.9922 -5.3266 -3.1763 17 6 1.6310 -6.6606 -4.6623 18 8 2.3668 -6.2623 -5.8208 19 6 1.9405 -4.6953 -0.7093 20 6 1.7711 -3.6319 0.3811 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7120 -2.6154 -0.6007 23 1 0.1031 -1.4477 -1.6744 24 1 1.2825 -3.2613 -2.8302 25 1 -0.4583 -3.6340 -2.8197 26 1 1.1768 -6.7812 -1.9425 27 1 -0.2415 -6.1330 -2.8007 28 1 3.3880 -6.1030 -2.7574 29 1 2.0851 -7.5535 -4.2328 30 1 0.6002 -6.8763 -4.9432 31 1 2.3955 -6.9318 -6.5180 32 1 2.7706 -4.4200 -1.3599 33 1 2.1451 -5.6610 -0.2469 34 1 2.7195 -3.4818 0.8966 35 1 1.0113 -3.9550 1.0926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133712977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:42 Heat of formation + Delta-G solvation = -94.895457 kcal Electronic energy + Delta-G solvation = -17158.204620 eV Core-core repulsion = 14383.949953 eV Total energy + Delta-G solvation = -2774.254667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46228 -38.42760 -36.88289 -35.65349 -33.37523 -31.59617 -31.11170 -28.39415 -25.86548 -24.44016 -23.97432 -22.54511 -20.68242 -18.80287 -18.24124 -17.52395 -17.20796 -16.74348 -16.03266 -15.83125 -15.69507 -15.25793 -14.99672 -14.72970 -14.33285 -13.94337 -13.39203 -13.17471 -12.93140 -12.71058 -12.59062 -12.31213 -12.08870 -12.03014 -11.82905 -11.56943 -11.42377 -11.10727 -10.98594 -10.59961 -9.04786 -8.57268 -7.87978 -5.39610 1.44414 1.46139 1.55294 2.49324 3.01630 3.19922 3.27745 3.54892 3.71717 4.00752 4.13961 4.30204 4.35517 4.38399 4.45878 4.55938 4.67025 4.72209 4.77900 4.86014 4.95222 5.03346 5.10744 5.26545 5.42881 5.61186 5.67050 6.19595 6.31276 6.40125 6.83723 6.91969 7.14009 7.83269 8.40370 9.18107 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.038353 B = 0.006720 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.885023 B = 4165.358166 C = 4353.866408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.061 0.939 9 N -0.613 5.613 10 C 0.188 3.812 11 C 0.050 3.950 12 N -0.533 5.533 13 C 0.031 3.969 14 C 0.068 3.932 15 H 0.075 0.925 16 O -0.569 6.569 17 C 0.052 3.948 18 O -0.595 6.595 19 C 0.045 3.955 20 C 0.141 3.859 21 H 0.251 0.749 22 H 0.000 1.000 23 H 0.046 0.954 24 H 0.020 0.980 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.383 0.617 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.396 0.604 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -16.546 -8.237 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.398 4.398 8 H 0.079 0.921 9 N -0.337 5.337 10 C 0.062 3.938 11 C -0.080 4.080 12 N -0.256 5.256 13 C -0.097 4.097 14 C 0.008 3.992 15 H 0.093 0.907 16 O -0.376 6.376 17 C -0.026 4.026 18 O -0.403 6.403 19 C -0.084 4.084 20 C 0.016 3.984 21 H 0.060 0.940 22 H 0.018 0.982 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.245 0.755 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 1.907 -15.368 -7.764 17.323 hybrid contribution 0.699 0.365 -0.538 0.955 sum 2.606 -15.003 -8.301 17.343 Atomic orbital electron populations 1.70161 1.06708 1.25925 1.55380 1.25964 0.96200 1.01663 1.00561 0.85232 0.78130 0.79302 0.77562 1.21262 1.21657 1.19215 1.19482 0.91352 0.85513 1.43406 0.92100 1.44299 1.35073 1.04280 1.50054 1.20638 0.88241 0.95129 0.89750 1.22636 0.98915 0.90557 0.95846 1.62175 1.35562 1.03625 1.24237 1.22942 1.00830 0.94528 0.91449 1.22774 0.83315 0.99024 0.94096 0.90749 1.86689 1.28527 1.42150 1.80269 1.22906 0.96663 0.96585 0.86478 1.86546 1.76693 1.47566 1.29478 1.22679 0.91094 0.99074 0.95583 1.21182 0.97177 0.86222 0.93837 0.94000 0.98234 0.93532 0.96224 0.90566 0.87992 0.88460 0.76847 0.90889 0.90936 0.75476 0.93285 0.88976 0.92623 0.97061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 11.29 21.65 0.24 -57.59 16 2 C -0.05 -2.83 5.01 84.86 0.42 -2.41 16 3 Si 0.97 46.83 29.57 68.60 2.03 48.86 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.27 -15.66 9.59 84.03 0.81 -14.85 16 8 H 0.06 3.50 7.86 -2.91 -0.02 3.48 16 9 N -0.61 -33.23 3.01 -697.25 -2.10 -35.33 16 10 C 0.19 9.83 5.38 86.50 0.47 10.29 16 11 C 0.05 2.04 4.57 86.54 0.40 2.43 16 12 N -0.53 -18.23 4.83 -894.33 -4.32 -22.55 16 13 C 0.03 0.72 5.28 86.31 0.46 1.17 16 14 C 0.07 1.72 2.66 30.59 0.08 1.80 16 15 H 0.07 2.38 6.21 -2.39 -0.01 2.37 16 16 O -0.57 -16.31 10.48 -144.35 -1.51 -17.82 16 17 C 0.05 0.90 6.68 71.98 0.48 1.38 16 18 O -0.59 -12.67 13.62 -144.35 -1.97 -14.64 16 19 C 0.04 1.56 5.09 86.39 0.44 2.00 16 20 C 0.14 6.31 6.69 86.35 0.58 6.89 16 21 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 22 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 23 H 0.05 2.71 6.41 -2.39 -0.02 2.69 16 24 H 0.02 0.87 6.60 -2.39 -0.02 0.85 16 25 H 0.08 2.75 8.11 -2.39 -0.02 2.74 16 26 H 0.10 1.80 7.84 -2.38 -0.02 1.78 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.38 7.48 9.04 -74.06 -0.67 6.81 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.40 4.13 9.12 -74.06 -0.68 3.45 16 32 H 0.05 1.86 5.80 -2.39 -0.01 1.84 16 33 H 0.09 2.53 7.92 -2.39 -0.02 2.51 16 34 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -75.04 276.97 -3.75 -78.78 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.25 Total: 11.57 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.13 Total: 8.71 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -6.17 Total: -115.47 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -3.48 Total: -32.45 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.04 -3.75 -78.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133712977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.113 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds