Wall clock time and date at job start Mon Mar 30 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 C 1.52995 * 109.47175 * 240.00163 * 2 1 3 5 5 C 1.50695 * 109.47375 * 60.00069 * 4 2 1 6 6 H 1.07995 * 120.00152 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00035 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46834 * 90.00063 * 9 7 5 11 11 H 1.48497 * 109.46940 * 210.00054 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99910 * 9 7 5 13 13 C 1.53000 * 109.46948 * 119.99952 * 2 1 3 14 14 O 1.42962 * 109.47408 * 299.99939 * 13 2 1 15 15 C 1.43092 * 113.77147 * 178.79375 * 14 13 2 16 16 C 1.53266 * 108.94454 * 302.03262 * 15 14 13 17 17 O 1.42904 * 109.57232 * 294.71393 * 16 15 14 18 18 C 1.53256 * 108.84362 * 54.52224 * 16 15 14 19 19 O 1.42975 * 109.47211 * 60.00194 * 13 2 1 20 20 H 1.08997 * 109.47194 * 299.99752 * 1 2 3 21 21 H 1.08997 * 109.46693 * 59.99989 * 1 2 3 22 22 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47079 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47478 * 300.00059 * 3 2 1 25 25 H 1.09007 * 109.46749 * 60.00100 * 3 2 1 26 26 H 1.09006 * 109.47167 * 180.02562 * 4 2 1 27 27 H 1.09009 * 109.47126 * 299.99557 * 4 2 1 28 28 H 0.96994 * 119.99696 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46989 * 179.97438 * 13 2 1 30 30 H 1.09001 * 109.55866 * 182.19580 * 15 14 13 31 31 H 1.08993 * 109.55865 * 61.87128 * 15 14 13 32 32 H 1.08998 * 109.57715 * 174.33174 * 16 15 14 33 33 H 0.96704 * 113.99736 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.56166 * 65.31219 * 18 16 15 35 35 H 1.09004 * 109.56186 * 185.63773 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6257 -1.5520 -3.8526 9 14 1.2472 0.3981 -5.2572 10 1 2.2252 1.4396 -5.6619 11 1 1.0819 -0.5814 -6.3611 12 1 -0.0609 1.0356 -4.9610 13 6 2.0400 -0.7212 1.2493 14 8 1.5635 -0.0473 2.4166 15 6 1.9659 -0.6642 3.6434 16 6 1.4657 -2.1129 3.6594 17 8 0.0369 -2.1258 3.6818 18 6 1.9659 -2.8232 2.3969 19 8 1.5634 -2.0692 1.2493 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1301 -0.7216 -1.2490 27 1 1.6768 -1.7490 -1.2492 28 1 2.8600 -1.8834 -4.7336 29 1 3.1301 -0.7216 1.2490 30 1 1.5350 -0.1201 4.4839 31 1 3.0532 -0.6528 3.7181 32 1 1.8512 -2.6227 4.5423 33 1 -0.3483 -3.0127 3.6924 34 1 3.0533 -2.8936 2.4243 35 1 1.5352 -3.8233 2.3458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144622791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:25 Heat of formation + Delta-G solvation = -154.680327 kcal Electronic energy + Delta-G solvation = -17430.959325 eV Core-core repulsion = 14621.819441 eV Total energy + Delta-G solvation = -2809.139884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94691 -36.87941 -35.34835 -35.19653 -32.25634 -30.33034 -27.03516 -26.31325 -25.88078 -25.17352 -22.81057 -20.91934 -18.37803 -17.42044 -16.90132 -16.32865 -15.95447 -15.41078 -15.01800 -14.37226 -13.91529 -13.48314 -13.21576 -12.78328 -12.61065 -12.28118 -12.03124 -11.92392 -11.22140 -10.98044 -10.86548 -10.73599 -10.65073 -10.40769 -10.15831 -10.04725 -9.76503 -9.48377 -9.26673 -9.05087 -8.79549 -8.26761 -5.91940 -3.91958 3.36918 3.43172 3.46737 3.85887 4.01570 4.27212 4.53648 4.68337 4.76892 5.04811 5.31235 5.34183 5.44147 5.55285 5.59348 5.73225 5.86869 6.11440 6.17806 6.50893 6.70594 6.79152 6.91939 7.11941 7.24068 7.30316 7.34595 7.58865 7.67045 7.75184 7.93605 8.09553 8.51160 9.13015 9.70067 11.19804 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.007028 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.112389 B = 3983.169416 C = 4180.858041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.125 4.125 4 C 0.038 3.962 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.256 3.744 14 O -0.377 6.377 15 C 0.063 3.937 16 C 0.037 3.963 17 O -0.545 6.545 18 C 0.022 3.978 19 O -0.365 6.365 20 H 0.038 0.962 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.027 0.973 28 H 0.258 0.742 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.374 0.626 34 H 0.056 0.944 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -1.311 14.668 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.162 3.838 14 O -0.297 6.297 15 C -0.014 4.014 16 C -0.023 4.023 17 O -0.350 6.350 18 C -0.055 4.055 19 O -0.285 6.285 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.221 0.779 34 H 0.075 0.925 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.329 -0.675 14.356 14.375 hybrid contribution 0.147 -0.563 -0.565 0.811 sum -0.183 -1.238 13.790 13.847 Atomic orbital electron populations 1.21570 0.94252 1.01413 1.00144 1.20676 0.96897 0.94854 0.91726 1.21697 0.99877 0.95425 1.01200 1.19105 0.95710 0.95910 0.89190 1.21221 1.30875 1.11945 0.90507 0.92189 1.25003 0.95431 0.95098 0.99011 1.69975 1.37344 1.23081 1.23239 0.86640 0.79264 0.79366 0.83017 1.20819 1.21383 1.19871 1.23822 0.94326 0.78921 0.86779 1.88201 1.76469 1.51568 1.13481 1.22583 0.98122 0.91531 0.89191 1.23064 0.83076 0.98783 0.97398 1.86629 1.18091 1.33086 1.97161 1.23315 0.99318 0.96156 0.86750 1.88283 1.76006 1.23983 1.40214 0.94317 0.92218 0.93104 0.93847 0.91162 0.93915 0.96996 0.95459 0.93192 0.93616 0.88326 0.91951 0.91624 0.77901 0.92544 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 7.93 37.16 0.29 -2.24 16 2 C -0.04 -0.91 0.44 -154.51 -0.07 -0.98 16 3 C -0.12 -2.52 8.07 37.16 0.30 -2.22 16 4 C 0.04 1.00 3.90 -27.89 -0.11 0.89 16 5 C -0.51 -14.24 7.65 -34.44 -0.26 -14.50 16 6 H 0.06 1.63 5.68 -52.49 -0.30 1.33 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.26 5.01 2.32 37.16 0.09 5.10 16 14 O -0.38 -6.81 9.15 -62.43 -0.57 -7.38 16 15 C 0.06 0.85 6.63 37.30 0.25 1.10 16 16 C 0.04 0.45 3.91 -26.46 -0.10 0.35 16 17 O -0.54 -7.49 13.26 -50.03 -0.66 -8.15 16 18 C 0.02 0.31 6.61 37.29 0.25 0.56 16 19 O -0.37 -7.15 9.15 -62.43 -0.57 -7.72 16 20 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 21 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 22 H 0.05 1.14 7.68 -51.93 -0.40 0.75 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 25 H 0.04 0.78 7.68 -51.93 -0.40 0.39 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.79 7.68 -51.92 -0.40 0.39 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.37 3.47 9.09 45.56 0.41 3.88 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -33.07 280.80 -6.01 -39.08 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.68 Total: -0.02 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 0.53 Total: -10.46 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.81 Total: -23.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.07 -6.01 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144622791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.598 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds