Wall clock time and date at job start Mon Mar 30 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 C 1.52995 * 109.47175 * 240.00163 * 2 1 3 5 5 C 1.50695 * 109.47375 * 60.00069 * 4 2 1 6 6 H 1.07995 * 120.00152 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00035 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46834 * 90.00063 * 9 7 5 11 11 H 1.48497 * 109.46940 * 210.00054 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99910 * 9 7 5 13 13 C 1.53000 * 109.46948 * 119.99952 * 2 1 3 14 14 O 1.42962 * 109.47408 * 299.99939 * 13 2 1 15 15 C 1.43092 * 113.77147 * 178.79375 * 14 13 2 16 16 C 1.53266 * 108.94454 * 302.03262 * 15 14 13 17 17 O 1.42904 * 109.57232 * 294.71393 * 16 15 14 18 18 C 1.53256 * 108.84362 * 54.52224 * 16 15 14 19 19 O 1.42975 * 109.47211 * 60.00194 * 13 2 1 20 20 H 1.08997 * 109.47194 * 299.99752 * 1 2 3 21 21 H 1.08997 * 109.46693 * 59.99989 * 1 2 3 22 22 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47079 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47478 * 300.00059 * 3 2 1 25 25 H 1.09007 * 109.46749 * 60.00100 * 3 2 1 26 26 H 1.09006 * 109.47167 * 180.02562 * 4 2 1 27 27 H 1.09009 * 109.47126 * 299.99557 * 4 2 1 28 28 H 0.96994 * 119.99696 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46989 * 179.97438 * 13 2 1 30 30 H 1.09001 * 109.55866 * 182.19580 * 15 14 13 31 31 H 1.08993 * 109.55865 * 61.87128 * 15 14 13 32 32 H 1.08998 * 109.57715 * 174.33174 * 16 15 14 33 33 H 0.96704 * 113.99736 * 179.97438 * 17 16 15 34 34 H 1.08999 * 109.56166 * 65.31219 * 18 16 15 35 35 H 1.09004 * 109.56186 * 185.63773 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6257 -1.5520 -3.8526 9 14 1.2472 0.3981 -5.2572 10 1 2.2252 1.4396 -5.6619 11 1 1.0819 -0.5814 -6.3611 12 1 -0.0609 1.0356 -4.9610 13 6 2.0400 -0.7212 1.2493 14 8 1.5635 -0.0473 2.4166 15 6 1.9659 -0.6642 3.6434 16 6 1.4657 -2.1129 3.6594 17 8 0.0369 -2.1258 3.6818 18 6 1.9659 -2.8232 2.3969 19 8 1.5634 -2.0692 1.2493 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1301 -0.7216 -1.2490 27 1 1.6768 -1.7490 -1.2492 28 1 2.8600 -1.8834 -4.7336 29 1 3.1301 -0.7216 1.2490 30 1 1.5350 -0.1201 4.4839 31 1 3.0532 -0.6528 3.7181 32 1 1.8512 -2.6227 4.5423 33 1 -0.3483 -3.0127 3.6924 34 1 3.0533 -2.8936 2.4243 35 1 1.5352 -3.8233 2.3458 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144622791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:25 Heat of formation + Delta-G solvation = -179.040349 kcal Electronic energy + Delta-G solvation = -17432.015655 eV Core-core repulsion = 14621.819441 eV Total energy + Delta-G solvation = -2810.196214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23273 -38.24674 -36.74296 -36.57244 -34.36438 -31.48077 -29.08358 -27.98960 -27.12316 -26.63976 -24.78985 -22.01515 -20.07706 -18.52544 -18.36774 -18.10644 -17.39420 -16.75356 -16.37865 -16.15235 -15.26854 -14.77041 -14.58254 -14.44563 -14.28273 -14.02592 -13.66223 -13.10650 -12.99964 -12.72141 -12.71168 -12.31980 -12.29866 -12.05544 -11.99194 -11.57131 -11.29538 -10.99817 -10.89184 -10.67467 -10.49917 -10.43271 -8.13031 -6.20570 1.42441 1.43667 1.54449 2.43514 2.66701 2.77025 3.20756 3.31929 3.70615 3.77584 3.84364 4.11276 4.22154 4.36899 4.38218 4.47764 4.62368 4.67961 4.76515 4.83417 5.00946 5.11507 5.15537 5.43960 5.47354 5.49098 5.58695 5.80502 5.89776 5.98477 6.29213 6.35566 6.85594 6.93307 7.46210 8.99561 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.007028 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.112389 B = 3983.169416 C = 4180.858041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.045 4.045 3 C -0.117 4.117 4 C 0.051 3.949 5 C -0.519 4.519 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.265 3.735 14 O -0.394 6.394 15 C 0.047 3.953 16 C 0.042 3.958 17 O -0.571 6.571 18 C 0.009 3.991 19 O -0.402 6.402 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.063 0.937 26 H -0.014 1.014 27 H -0.009 1.009 28 H 0.260 0.740 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.391 0.609 34 H 0.070 0.930 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -0.648 15.868 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.174 4.174 4 C 0.014 3.986 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.188 1.188 13 C 0.171 3.829 14 O -0.315 6.315 15 C -0.029 4.029 16 C -0.017 4.017 17 O -0.378 6.378 18 C -0.067 4.067 19 O -0.323 6.323 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.005 0.995 27 H 0.009 0.991 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.576 -0.017 15.583 15.594 hybrid contribution 0.229 -0.849 -0.833 1.212 sum -0.347 -0.866 14.750 14.780 Atomic orbital electron populations 1.21417 0.94167 1.00282 1.00202 1.20542 0.96893 0.95738 0.91345 1.21603 1.00039 0.94184 1.01590 1.18859 0.93861 0.94391 0.91472 1.21589 1.30629 1.12099 0.91345 0.91493 1.25925 0.95622 0.95854 1.02553 1.70117 1.38735 1.24743 1.24091 0.85526 0.79114 0.78225 0.78680 1.19780 1.21176 1.18804 1.23339 0.93966 0.79098 0.86530 1.88126 1.76900 1.52090 1.14404 1.23015 0.99944 0.92431 0.87475 1.23115 0.82522 0.98111 0.97934 1.86577 1.19063 1.34990 1.97203 1.23712 1.00513 0.96551 0.85972 1.88221 1.76684 1.24218 1.43147 0.92903 0.93236 0.94788 0.93539 0.92308 0.91823 0.99538 0.99090 0.93093 0.93576 0.86754 0.89578 0.87294 0.75950 0.91174 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.51 7.93 71.98 0.57 -3.94 16 2 C -0.04 -1.99 0.44 -52.18 -0.02 -2.01 16 3 C -0.12 -4.64 8.07 71.98 0.58 -4.06 16 4 C 0.05 2.80 3.90 29.84 0.12 2.91 16 5 C -0.52 -29.58 7.65 25.60 0.20 -29.38 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.27 10.29 2.32 71.98 0.17 10.46 16 14 O -0.39 -13.58 9.15 -122.97 -1.13 -14.71 16 15 C 0.05 1.15 6.63 72.07 0.48 1.62 16 16 C 0.04 0.92 3.91 30.77 0.12 1.04 16 17 O -0.57 -14.39 13.26 -134.83 -1.79 -16.18 16 18 C 0.01 0.23 6.61 72.07 0.48 0.71 16 19 O -0.40 -15.73 9.15 -122.97 -1.13 -16.86 16 20 H 0.05 2.12 7.68 -2.39 -0.02 2.10 16 21 H 0.05 2.20 6.62 -2.39 -0.02 2.18 16 22 H 0.03 1.55 7.68 -2.39 -0.02 1.53 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 2.43 6.62 -2.39 -0.02 2.41 16 25 H 0.06 2.24 7.68 -2.38 -0.02 2.22 16 26 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 27 H -0.01 -0.57 7.68 -2.38 -0.02 -0.59 16 28 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.39 6.44 9.09 -74.05 -0.67 5.76 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -71.97 280.80 1.82 -70.15 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.40 Total: 10.54 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.14 Total: -22.34 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -4.04 Total: -47.74 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.97 1.82 -70.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144622791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.888 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds