Wall clock time and date at job start Mon Mar 30 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 111.00064 * 2 1 4 4 C 1.53003 * 109.46759 * 293.95551 * 3 2 1 5 5 C 1.50700 * 109.47131 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99564 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00407 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99638 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46998 * 89.99647 * 9 7 5 11 11 H 1.48499 * 109.47223 * 209.99911 * 9 7 5 12 12 H 1.48498 * 109.47046 * 330.00079 * 9 7 5 13 13 C 1.39032 * 111.00380 * 123.95352 * 2 1 3 14 14 C 1.38888 * 120.16830 * 296.32603 * 13 2 1 15 15 C 1.38015 * 120.06689 * 180.28227 * 14 13 2 16 16 C 1.38572 * 120.42133 * 359.71253 * 15 14 13 17 17 C 1.37796 * 120.34678 * 0.02562 * 16 15 14 18 18 C 1.39720 * 119.91802 * 359.97438 * 17 16 15 19 19 C 1.43205 * 120.20635 * 180.02562 * 18 17 16 20 20 N 3.54358 * 118.82805 * 209.71500 * 2 1 3 21 21 H 1.09004 * 109.47239 * 296.04801 * 1 2 3 22 22 H 1.09000 * 109.47566 * 56.04587 * 1 2 3 23 23 H 1.09002 * 109.47205 * 176.04919 * 1 2 3 24 24 H 1.08998 * 109.46998 * 53.95033 * 3 2 1 25 25 H 1.08995 * 109.46987 * 173.95545 * 3 2 1 26 26 H 1.09007 * 109.47120 * 299.99565 * 4 3 2 27 27 H 1.09002 * 109.47554 * 59.99587 * 4 3 2 28 28 H 0.97003 * 120.00164 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.96935 * 359.97438 * 14 13 2 30 30 H 1.07996 * 119.79223 * 179.73957 * 15 14 13 31 31 H 1.08008 * 119.82413 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.03771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1709 3.4646 -1.3181 6 1 2.7190 3.8326 -0.4634 7 6 1.9648 4.2821 -2.4090 8 7 1.2977 3.8337 -3.4500 9 14 2.6329 6.0265 -2.4085 10 1 4.0048 6.0313 -2.9768 11 1 1.7528 6.8939 -3.2321 12 1 2.6722 6.5411 -1.0161 13 6 1.9673 -0.7249 1.0766 14 6 1.7203 -0.3027 2.3765 15 6 2.2209 -1.0207 3.4436 16 6 2.9669 -2.1686 3.2288 17 6 3.2177 -2.6061 1.9465 18 6 2.7179 -1.8902 0.8557 19 6 2.9744 -2.3396 -0.4796 20 7 3.1776 -2.6962 -1.5388 21 1 -0.3634 0.4513 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5610 1.9274 0.8309 25 1 3.0796 1.3444 0.1082 26 1 2.0658 1.5015 -2.1493 27 1 0.5471 2.0844 -1.4266 28 1 1.1524 4.4090 -4.2174 29 1 1.1402 0.5910 2.5525 30 1 2.0298 -0.6861 4.4525 31 1 3.3536 -2.7233 4.0710 32 1 3.7994 -3.5016 1.7848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148790062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:44 Heat of formation + Delta-G solvation = 57.514885 kcal Electronic energy + Delta-G solvation = -15071.271480 eV Core-core repulsion = 12610.934742 eV Total energy + Delta-G solvation = -2460.336738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97982 -36.73573 -36.01472 -33.13857 -31.32933 -30.55652 -28.96413 -26.04616 -24.32707 -23.62184 -21.75171 -19.93166 -18.74276 -16.84311 -16.02567 -15.65236 -14.84623 -14.66511 -14.41507 -14.06016 -13.72800 -13.41606 -12.92216 -12.51434 -12.45015 -12.26675 -12.00017 -11.75151 -11.51680 -11.20132 -11.16300 -10.92268 -10.60040 -9.96542 -9.56182 -9.20624 -8.99657 -8.64829 -8.36523 -8.08523 -6.01920 -4.05150 0.82268 1.22785 3.05706 3.13106 3.31198 3.37378 3.39796 3.96466 4.10445 4.15337 4.46724 4.84388 4.90553 5.16446 5.34036 5.35398 5.42479 5.70756 5.75398 5.79011 6.08519 6.14917 6.19878 6.32374 6.38029 6.43504 6.67954 6.85645 7.21503 7.54619 7.75278 7.82037 7.87539 8.02403 8.37620 9.01597 9.58812 11.09416 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.006039 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.924874 B = 4635.178256 C = 4972.892050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.521 5.521 3 C 0.069 3.931 4 C 0.027 3.973 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.156 3.844 14 C -0.153 4.153 15 C -0.083 4.083 16 C -0.134 4.134 17 C -0.069 4.069 18 C -0.016 4.016 19 C 0.269 3.731 20 N -0.420 5.420 21 H 0.028 0.972 22 H 0.087 0.913 23 H 0.059 0.941 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -10.487 15.058 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.243 5.243 3 C -0.056 4.056 4 C -0.010 4.010 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.058 3.942 14 C -0.173 4.173 15 C -0.103 4.103 16 C -0.152 4.152 17 C -0.090 4.090 18 C -0.021 4.021 19 C -0.046 4.046 20 N -0.095 5.095 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.709 -11.190 12.768 16.993 hybrid contribution -0.017 1.636 1.013 1.925 sum 0.692 -9.554 13.781 16.783 Atomic orbital electron populations 1.22444 0.85477 1.01692 1.01866 1.59609 1.08800 1.17043 1.38820 1.22480 0.98807 0.83136 1.01148 1.19122 0.97111 0.94155 0.90603 1.21136 1.35434 0.97549 1.02145 0.92695 1.24988 0.95202 0.98539 0.95496 1.69972 1.40580 1.36497 1.06017 0.86581 0.78903 0.84451 0.77989 1.20608 1.21188 1.19881 1.19018 0.93422 0.91819 0.89922 1.21770 1.01827 1.01130 0.92606 1.21232 0.95715 0.94377 0.98959 1.21005 1.00313 0.97451 0.96470 1.21084 0.97788 0.98836 0.91294 1.16089 1.03118 0.96575 0.86304 1.25300 0.93627 0.93112 0.92573 1.81165 1.08492 1.09342 1.10469 0.95303 0.89408 0.92169 0.95153 0.91805 0.95668 0.96178 0.92917 0.85152 0.85598 0.85254 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.18 60.06 0.55 1.06 16 2 N -0.52 -9.43 4.10 -178.70 -0.73 -10.16 16 3 C 0.07 1.42 4.48 -3.82 -0.02 1.41 16 4 C 0.03 0.71 4.90 -27.88 -0.14 0.57 16 5 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.16 2.34 4.67 -83.56 -0.39 1.95 16 14 C -0.15 -1.88 8.64 -39.42 -0.34 -2.22 16 15 C -0.08 -0.79 10.03 -39.54 -0.40 -1.18 16 16 C -0.13 -1.16 10.02 -39.62 -0.40 -1.56 16 17 C -0.07 -0.71 9.75 -39.19 -0.38 -1.09 16 18 C -0.02 -0.23 5.76 -106.62 -0.61 -0.85 16 19 C 0.27 4.53 14.81 -22.47 -0.33 4.20 16 20 N -0.42 -8.01 18.54 41.83 0.78 -7.24 16 21 H 0.03 0.41 7.32 -51.93 -0.38 0.03 16 22 H 0.09 1.58 6.30 -51.93 -0.33 1.26 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.03 0.59 7.48 -51.93 -0.39 0.20 16 25 H 0.06 1.34 8.06 -51.93 -0.42 0.93 16 26 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.02 0.54 6.47 -51.93 -0.34 0.20 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.13 1.55 7.12 -52.49 -0.37 1.18 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 282.84 15.07 4.26 4.26 Total: -1.00 -31.90 282.84 -6.72 -38.62 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -3.88 Total: -4.70 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.87 Total: -11.17 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.78 Total: -43.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.90 -6.72 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148790062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.135 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds