Wall clock time and date at job start Mon Mar 30 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 111.00064 * 2 1 4 4 C 1.53003 * 109.46759 * 293.95551 * 3 2 1 5 5 C 1.50700 * 109.47131 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99564 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00407 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99638 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46998 * 89.99647 * 9 7 5 11 11 H 1.48499 * 109.47223 * 209.99911 * 9 7 5 12 12 H 1.48498 * 109.47046 * 330.00079 * 9 7 5 13 13 C 1.39032 * 111.00380 * 123.95352 * 2 1 3 14 14 C 1.38888 * 120.16830 * 296.32603 * 13 2 1 15 15 C 1.38015 * 120.06689 * 180.28227 * 14 13 2 16 16 C 1.38572 * 120.42133 * 359.71253 * 15 14 13 17 17 C 1.37796 * 120.34678 * 0.02562 * 16 15 14 18 18 C 1.39720 * 119.91802 * 359.97438 * 17 16 15 19 19 C 1.43205 * 120.20635 * 180.02562 * 18 17 16 20 20 N 3.54358 * 118.82805 * 209.71500 * 2 1 3 21 21 H 1.09004 * 109.47239 * 296.04801 * 1 2 3 22 22 H 1.09000 * 109.47566 * 56.04587 * 1 2 3 23 23 H 1.09002 * 109.47205 * 176.04919 * 1 2 3 24 24 H 1.08998 * 109.46998 * 53.95033 * 3 2 1 25 25 H 1.08995 * 109.46987 * 173.95545 * 3 2 1 26 26 H 1.09007 * 109.47120 * 299.99565 * 4 3 2 27 27 H 1.09002 * 109.47554 * 59.99587 * 4 3 2 28 28 H 0.97003 * 120.00164 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.96935 * 359.97438 * 14 13 2 30 30 H 1.07996 * 119.79223 * 179.73957 * 15 14 13 31 31 H 1.08008 * 119.82413 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.03771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1709 3.4646 -1.3181 6 1 2.7190 3.8326 -0.4634 7 6 1.9648 4.2821 -2.4090 8 7 1.2977 3.8337 -3.4500 9 14 2.6329 6.0265 -2.4085 10 1 4.0048 6.0313 -2.9768 11 1 1.7528 6.8939 -3.2321 12 1 2.6722 6.5411 -1.0161 13 6 1.9673 -0.7249 1.0766 14 6 1.7203 -0.3027 2.3765 15 6 2.2209 -1.0207 3.4436 16 6 2.9669 -2.1686 3.2288 17 6 3.2177 -2.6061 1.9465 18 6 2.7179 -1.8902 0.8557 19 6 2.9744 -2.3396 -0.4796 20 7 3.1776 -2.6962 -1.5388 21 1 -0.3634 0.4513 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5610 1.9274 0.8309 25 1 3.0796 1.3444 0.1082 26 1 2.0658 1.5015 -2.1493 27 1 0.5471 2.0844 -1.4266 28 1 1.1524 4.4090 -4.2174 29 1 1.1402 0.5910 2.5525 30 1 2.0298 -0.6861 4.4525 31 1 3.3536 -2.7233 4.0710 32 1 3.7994 -3.5016 1.7848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148790062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:44 Heat of formation + Delta-G solvation = 37.867282 kcal Electronic energy + Delta-G solvation = -15072.123464 eV Core-core repulsion = 12610.934742 eV Total energy + Delta-G solvation = -2461.188722 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04248 -38.03338 -37.28932 -35.20823 -32.34307 -32.10124 -30.31604 -27.62136 -26.01420 -24.55279 -23.21330 -21.44550 -19.78437 -18.66804 -17.40614 -16.76961 -16.48071 -16.00615 -15.86372 -15.19521 -15.03513 -14.74741 -14.23673 -14.12402 -13.95804 -13.67237 -13.30271 -13.06385 -12.93796 -12.73327 -12.59069 -12.47117 -12.18450 -11.88849 -11.44197 -11.32591 -10.57406 -9.89225 -9.63554 -9.44233 -8.22150 -6.34379 -0.13707 0.36411 1.39287 1.41349 1.52211 1.77192 2.06277 2.38416 2.87132 2.92788 3.06631 3.11661 4.01965 4.13149 4.22122 4.34190 4.40759 4.51712 4.59983 4.62077 4.70219 4.92553 4.95403 5.02781 5.37059 5.41388 5.45911 5.52991 5.55481 5.72967 5.88192 5.95519 6.22974 6.43643 6.61751 6.82833 7.35335 8.90218 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.006039 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.924874 B = 4635.178256 C = 4972.892050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.541 5.541 3 C 0.090 3.910 4 C 0.035 3.965 5 C -0.543 4.543 6 H 0.065 0.935 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.968 3.032 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.126 3.874 14 C -0.159 4.159 15 C -0.067 4.067 16 C -0.116 4.116 17 C -0.058 4.058 18 C -0.043 4.043 19 C 0.286 3.714 20 N -0.479 5.479 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.056 0.944 26 H -0.020 1.020 27 H 0.001 0.999 28 H 0.263 0.737 29 H 0.131 0.869 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -10.497 18.789 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C -0.035 4.035 4 C -0.003 4.003 5 C -0.582 4.582 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.181 1.181 13 C 0.029 3.971 14 C -0.179 4.179 15 C -0.086 4.086 16 C -0.134 4.134 17 C -0.079 4.079 18 C -0.047 4.047 19 C -0.028 4.028 20 N -0.155 5.155 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.075 0.925 26 H -0.002 1.002 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.180 0.820 31 H 0.191 0.809 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.507 -11.218 16.524 20.029 hybrid contribution -0.276 1.544 -0.025 1.569 sum 1.230 -9.673 16.499 19.165 Atomic orbital electron populations 1.22383 0.84878 1.02271 1.01488 1.59347 1.09676 1.15542 1.41705 1.22011 0.98393 0.84892 0.98204 1.18943 0.95419 0.93780 0.92117 1.21601 1.35406 0.98566 1.02600 0.91704 1.26004 0.95336 1.03484 0.94960 1.70127 1.42034 1.38391 1.06856 0.85398 0.78082 0.78485 0.78787 1.20073 1.20722 1.18132 1.19034 0.95435 0.92530 0.90077 1.21808 1.02387 1.01709 0.92040 1.21670 0.93725 0.93580 0.99661 1.21515 0.98323 0.96753 0.96759 1.21425 0.96732 0.98889 0.90852 1.16332 1.04985 0.97591 0.85808 1.25951 0.92076 0.91720 0.93042 1.81157 1.10809 1.11463 1.12056 0.93200 0.92500 0.90654 0.93794 0.92529 1.00180 0.98035 0.92782 0.85075 0.81983 0.80949 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 9.18 127.69 1.17 2.36 16 2 N -0.54 -20.07 4.10 -719.27 -2.95 -23.02 16 3 C 0.09 3.84 4.48 86.30 0.39 4.23 16 4 C 0.03 1.90 4.90 29.85 0.15 2.05 16 5 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 6 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 9 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 C 0.13 3.67 4.67 38.67 0.18 3.85 16 14 C -0.16 -3.46 8.64 22.37 0.19 -3.27 16 15 C -0.07 -0.93 10.03 22.30 0.22 -0.70 16 16 C -0.12 -1.36 10.02 22.24 0.22 -1.14 16 17 C -0.06 -0.99 9.75 22.52 0.22 -0.77 16 18 C -0.04 -1.15 5.76 -21.16 -0.12 -1.27 16 19 C 0.29 9.86 14.81 88.33 1.31 11.17 16 20 N -0.48 -19.15 18.54 19.00 0.35 -18.79 16 21 H 0.05 1.40 7.32 -2.38 -0.02 1.39 16 22 H 0.06 2.20 6.30 -2.39 -0.02 2.18 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.04 1.71 7.48 -2.39 -0.02 1.70 16 25 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 26 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 27 H 0.00 0.08 6.47 -2.39 -0.02 0.06 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.13 2.79 7.12 -2.91 -0.02 2.77 16 30 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 31 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -73.66 282.84 5.45 -68.20 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.11 Total: -0.82 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.63 Total: -14.10 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -2.31 Total: -99.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.66 5.45 -68.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148790062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.069 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds