Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46721 * 2 1 4 4 C 1.52995 * 109.47449 * 119.99685 * 2 1 3 5 5 H 1.08999 * 109.47389 * 295.88993 * 4 2 1 6 6 C 1.50700 * 109.47325 * 175.88686 * 4 2 1 7 7 H 1.07999 * 119.99721 * 305.56675 * 6 4 2 8 8 C 1.37874 * 120.00116 * 125.56364 * 6 4 2 9 9 N 1.31516 * 120.00213 * 186.07964 * 8 6 4 10 10 Si 1.86801 * 119.99951 * 6.07850 * 8 6 4 11 11 H 1.48500 * 109.47116 * 265.97244 * 10 8 6 12 12 H 1.48502 * 109.47248 * 145.97312 * 10 8 6 13 13 H 1.48506 * 109.47113 * 25.97098 * 10 8 6 14 14 C 1.50696 * 109.46958 * 55.88842 * 4 2 1 15 15 C 1.38704 * 120.31072 * 239.72548 * 14 4 2 16 16 C 1.38488 * 118.50983 * 179.73388 * 15 14 4 17 17 C 1.39459 * 119.04852 * 0.55639 * 16 15 14 18 18 C 1.43203 * 119.73764 * 179.72349 * 17 16 15 19 19 N 7.42984 * 74.08784 * 169.42735 * 2 1 3 20 20 N 1.32792 * 120.52857 * 359.70501 * 17 16 15 21 21 C 1.31593 * 121.61394 * 359.97438 * 20 17 16 22 22 H 1.08996 * 109.47038 * 299.99887 * 1 2 3 23 23 H 1.08996 * 109.47013 * 60.00281 * 1 2 3 24 24 H 1.09002 * 109.46310 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47249 * 240.00867 * 2 1 3 26 26 H 1.08997 * 109.47329 * 185.07587 * 3 2 1 27 27 H 1.09008 * 109.47007 * 305.07305 * 3 2 1 28 28 H 1.09001 * 109.47222 * 65.07226 * 3 2 1 29 29 H 0.96994 * 119.99879 * 180.02562 * 9 8 6 30 30 H 1.08003 * 120.74428 * 359.97310 * 15 14 4 31 31 H 1.07994 * 120.47700 * 180.23664 * 16 15 14 32 32 H 1.08001 * 119.54059 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.7382 -0.1665 2.1377 6 6 3.5437 -0.8100 1.1993 7 1 4.0305 -1.2475 0.3402 8 6 4.2977 -0.3327 2.2502 9 7 5.6092 -0.3001 2.1572 10 14 3.4567 0.2676 3.8064 11 1 3.2514 1.7360 3.7232 12 1 4.3075 -0.0474 4.9820 13 1 2.1423 -0.4084 3.9511 14 6 1.4564 -2.1095 1.3013 15 6 0.6741 -2.5000 2.3780 16 6 0.1519 -3.7826 2.3849 17 6 0.4389 -4.6364 1.3202 18 6 -0.0885 -5.9677 1.3151 19 7 -0.5069 -7.0238 1.3110 20 7 1.1971 -4.2245 0.3108 21 6 1.7001 -3.0089 0.2772 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 3.1261 1.4441 -0.0909 27 1 1.6043 1.9820 -0.8411 28 1 1.7527 1.9295 0.9319 29 1 6.1397 0.0354 2.8967 30 1 0.4736 -1.8178 3.1910 31 1 -0.4645 -4.1187 3.2055 32 1 2.3129 -2.7092 -0.5601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149469596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = 45.950864 kcal Electronic energy + Delta-G solvation = -15502.800433 eV Core-core repulsion = 13041.962241 eV Total energy + Delta-G solvation = -2460.838192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.06279 -36.82340 -35.89844 -32.50184 -32.20002 -31.23460 -28.03617 -26.48736 -24.13551 -23.43898 -21.99682 -19.10381 -19.04063 -17.29828 -15.99008 -15.10649 -14.71262 -14.46215 -14.29090 -13.67154 -13.32041 -12.96639 -12.88136 -12.64222 -12.54901 -12.26106 -12.19106 -11.98681 -11.62313 -11.07863 -10.76539 -10.44558 -10.25543 -10.03522 -9.85087 -9.56509 -9.35915 -9.01915 -8.75194 -8.28552 -6.29873 -4.29664 1.03728 1.61588 2.73380 3.11459 3.16426 3.17406 3.23636 3.85376 4.20731 4.30199 4.96003 5.00941 5.30450 5.34741 5.45910 5.62934 5.72498 5.75317 5.96707 5.98599 6.18442 6.34247 6.38446 6.43993 6.45884 6.63410 6.77102 6.93621 7.01976 7.14197 7.15925 7.48169 7.56084 8.17564 8.26902 8.74799 9.30486 10.81990 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025647 B = 0.008818 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.499117 B = 3174.613470 C = 3614.067128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.132 4.132 4 C 0.044 3.956 5 H 0.052 0.948 6 C -0.504 4.504 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.886 5.886 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C -0.041 4.041 15 C -0.103 4.103 16 C -0.113 4.113 17 C 0.137 3.863 18 C 0.285 3.715 19 N -0.423 5.423 20 N -0.452 5.452 21 C 0.113 3.887 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 1.416 -0.001 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 C -0.190 4.190 4 C 0.025 3.975 5 H 0.070 0.930 6 C -0.541 4.541 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.697 3.303 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.187 1.187 14 C -0.044 4.044 15 C -0.129 4.129 16 C -0.136 4.136 17 C 0.001 3.999 18 C -0.032 4.032 19 N -0.101 5.101 20 N -0.162 5.162 21 C -0.048 4.048 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.528 -0.754 -0.588 9.576 hybrid contribution -0.179 1.259 1.717 2.137 sum -9.707 0.505 1.129 9.786 Atomic orbital electron populations 1.21969 0.97452 1.00715 1.00616 1.21204 0.92774 0.96759 0.99343 1.21666 1.02650 0.95239 0.99414 1.18592 0.96491 0.86828 0.95610 0.92980 1.20835 0.87059 1.40651 1.05592 0.90109 1.25080 0.94685 0.94701 0.98139 1.69880 1.04737 1.45246 1.32330 0.86963 0.79948 0.79702 0.83685 1.19945 1.21316 1.18666 1.22035 0.89414 1.00829 0.92156 1.21529 0.96830 0.95444 0.99072 1.21845 0.99909 0.94079 0.97749 1.16168 1.01231 0.87964 0.94574 1.25209 0.92933 0.92048 0.92975 1.81173 1.09799 1.10969 1.08130 1.67483 1.06983 1.17759 1.23933 1.22589 0.96461 0.86823 0.98928 0.93411 0.93688 0.93473 0.91677 0.91058 0.94568 0.94031 0.92289 0.84599 0.84857 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.89 37.16 0.33 -1.83 16 2 C -0.08 -1.38 2.26 -90.62 -0.20 -1.58 16 3 C -0.13 -2.23 8.91 37.16 0.33 -1.90 16 4 C 0.04 0.86 1.49 -92.93 -0.14 0.72 16 5 H 0.05 1.02 4.43 -51.93 -0.23 0.79 16 6 C -0.50 -11.92 7.52 -34.44 -0.26 -12.18 16 7 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 8 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.89 -24.49 13.96 55.43 0.77 -23.71 16 10 Si 0.87 18.99 27.20 -169.99 -4.62 14.37 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.26 -5.22 6.13 56.52 0.35 -4.87 16 14 C -0.04 -0.73 3.33 -104.37 -0.35 -1.07 16 15 C -0.10 -1.63 9.79 -39.32 -0.39 -2.01 16 16 C -0.11 -1.62 9.80 -39.03 -0.38 -2.00 16 17 C 0.14 2.22 6.58 -85.07 -0.56 1.66 16 18 C 0.28 4.60 15.53 -22.47 -0.35 4.25 16 19 N -0.42 -7.24 18.54 41.84 0.78 -6.47 16 20 N -0.45 -7.97 10.28 -11.16 -0.11 -8.08 16 21 C 0.11 1.98 10.03 -17.57 -0.18 1.80 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.67 7.10 -51.93 -0.37 0.30 16 25 H 0.06 1.09 7.55 -51.93 -0.39 0.70 16 26 H 0.07 1.36 7.52 -51.93 -0.39 0.97 16 27 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.14 1.96 7.67 -52.48 -0.40 1.56 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.17 2.78 7.63 -52.49 -0.40 2.38 16 LS Contribution 278.81 15.07 4.20 4.20 Total: -1.00 -26.41 278.81 -5.14 -31.55 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.91 Total: 0.42 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.24 Total: -12.27 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.43 Total: -38.26 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.62 Total: 14.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.41 -5.14 -31.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149469596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.498 kcal (2) G-P(sol) polarization free energy of solvation -26.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds