Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81404 * 102.99557 * 2 1 4 4 C 1.53001 * 109.47084 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47384 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00133 * 169.99963 * 5 4 3 7 7 C 1.53230 * 109.33899 * 187.25239 * 6 5 4 8 8 N 1.47080 * 108.52531 * 306.16795 * 7 6 5 9 9 C 1.36931 * 120.88364 * 231.18821 * 8 7 6 10 10 H 1.07994 * 120.00368 * 26.84029 * 9 8 7 11 11 C 1.38812 * 119.99721 * 206.56279 * 9 8 7 12 12 N 1.31619 * 120.00606 * 17.47328 * 11 9 8 13 13 Si 1.86807 * 119.99780 * 197.47555 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.38387 * 13 11 9 15 15 H 1.48508 * 109.46899 * 214.38152 * 13 11 9 16 16 H 1.48495 * 109.47303 * 334.38014 * 13 11 9 17 17 C 1.47082 * 118.23403 * 51.45931 * 8 7 6 18 18 C 1.46904 * 110.99940 * 294.30302 * 5 4 3 19 19 H 1.08999 * 109.46422 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46949 * 299.99475 * 1 2 3 21 21 H 1.08995 * 109.46946 * 60.00276 * 1 2 3 22 22 H 1.09000 * 109.47595 * 60.00080 * 3 2 1 23 23 H 1.09000 * 109.47176 * 299.99581 * 3 2 1 24 24 H 1.09000 * 109.46958 * 59.99545 * 4 3 2 25 25 H 1.09005 * 109.47254 * 300.00151 * 4 3 2 26 26 H 1.09001 * 109.49186 * 67.29185 * 6 5 4 27 27 H 1.09000 * 109.51153 * 307.22921 * 6 5 4 28 28 H 1.09004 * 109.63143 * 186.45915 * 7 6 5 29 29 H 1.09004 * 109.63158 * 65.88032 * 7 6 5 30 30 H 0.96993 * 120.00972 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.63087 * 68.24805 * 17 8 7 32 32 H 1.08996 * 109.63194 * 188.83501 * 17 8 7 33 33 H 1.09005 * 109.48966 * 292.70358 * 18 5 4 34 34 H 1.08995 * 109.49430 * 52.78410 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 7 4.0726 3.3715 -0.0013 6 6 5.5072 3.5807 0.2363 7 6 5.7797 5.0787 0.4084 8 7 5.2320 5.7903 -0.7565 9 6 6.0006 6.6746 -1.4651 10 1 7.0745 6.5618 -1.4847 11 6 5.3990 7.7128 -2.1631 12 7 4.1617 8.0639 -1.8834 13 14 6.3455 8.6117 -3.4994 14 1 6.0390 8.0022 -4.8184 15 1 5.9476 10.0425 -3.5107 16 1 7.8022 8.5052 -3.2313 17 6 3.8349 5.5312 -1.1364 18 6 3.6406 4.0109 -1.2513 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 1.8031 2.2372 0.8900 23 1 1.8031 2.2371 -0.8900 24 1 4.1608 1.4706 -0.8908 25 1 4.1616 1.4704 0.8891 26 1 6.0755 3.2029 -0.6137 27 1 5.8078 3.0501 1.1397 28 1 6.8544 5.2507 0.4704 29 1 5.2958 5.4370 1.3171 30 1 3.7414 8.7896 -2.3708 31 1 3.1676 5.9320 -0.3734 32 1 3.6230 6.0022 -2.0962 33 1 4.2350 3.6271 -2.0805 34 1 2.5873 3.7924 -1.4265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159005944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = 27.983615 kcal Electronic energy + Delta-G solvation = -14466.174613 eV Core-core repulsion = 12140.001254 eV Total energy + Delta-G solvation = -2326.173359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.19950 -34.75843 -31.92372 -29.92741 -29.89948 -29.02237 -26.13316 -23.38974 -22.57151 -21.31267 -19.11209 -16.86111 -16.24819 -15.31925 -15.03395 -14.56909 -14.21057 -13.89823 -13.61342 -13.47778 -13.41941 -13.13670 -12.57898 -12.37710 -11.73105 -11.35689 -11.17864 -11.02817 -10.75633 -10.41984 -10.31094 -10.09929 -10.02475 -9.73289 -9.59821 -8.50941 -7.88135 -7.74225 -6.67439 -5.78382 -3.19366 1.58687 2.52825 3.37829 3.44917 3.46348 4.44192 4.51636 4.93537 4.98902 4.99582 5.10509 5.38731 5.43124 5.53037 5.60338 5.78110 5.88804 5.94415 6.03000 6.15061 6.22313 6.33475 6.53228 6.67754 6.92950 7.23800 7.56101 7.62607 7.69445 7.81552 8.43218 9.21032 9.84501 10.43072 11.30490 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049730 B = 0.005468 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.909045 B = 5119.623405 C = 5420.690720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.275 6.275 3 C -0.075 4.075 4 C 0.071 3.929 5 N -0.531 5.531 6 C 0.046 3.954 7 C 0.149 3.851 8 N -0.596 5.596 9 C -0.252 4.252 10 H 0.067 0.933 11 C 0.001 3.999 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.178 3.822 18 C 0.031 3.969 19 H 0.098 0.902 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -12.984 3.232 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.051 6.051 3 C -0.224 4.224 4 C -0.058 4.058 5 N -0.256 5.256 6 C -0.084 4.084 7 C 0.022 3.978 8 N -0.319 5.319 9 C -0.381 4.381 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.549 5.549 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.052 3.948 18 C -0.098 4.098 19 H 0.117 0.883 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.679 -13.470 3.540 14.692 hybrid contribution -0.087 1.112 -1.378 1.773 sum -4.766 -12.358 2.161 13.420 Atomic orbital electron populations 1.23335 0.94063 1.06197 1.05015 1.86732 1.07487 1.12752 1.98145 1.23444 1.00772 0.92408 1.05756 1.21733 0.92248 0.90657 1.01193 1.61973 1.17618 1.09586 1.36460 1.22624 0.86739 0.99940 0.99074 1.20986 0.97145 0.88817 0.90868 1.44147 1.10240 1.48021 1.29494 1.19230 0.90630 1.04339 1.23950 0.91568 1.25014 0.96886 0.96560 1.01246 1.70029 1.13563 1.29836 1.41448 0.86270 0.79412 0.78810 0.82279 1.21527 1.21743 1.20395 1.20959 0.85264 0.87544 1.01007 1.23060 0.98271 0.99656 0.88795 0.88303 0.90469 0.90512 0.89216 0.89827 0.94638 0.90564 0.95299 0.91897 0.92500 0.95611 0.93631 0.95543 0.89328 0.95514 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.76 101.05 1.09 0.04 16 2 S -0.28 -3.37 22.38 -107.50 -2.41 -5.78 16 3 C -0.08 -1.00 5.87 37.16 0.22 -0.78 16 4 C 0.07 1.06 4.97 -3.82 -0.02 1.04 16 5 N -0.53 -9.57 4.63 -234.02 -1.08 -10.66 16 6 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 7 C 0.15 3.20 6.69 -3.61 -0.02 3.18 16 8 N -0.60 -15.27 3.03 -171.74 -0.52 -15.79 16 9 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 10 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 11 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 12 N -0.90 -26.37 11.16 55.49 0.62 -25.75 16 13 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.18 4.34 5.45 -3.36 -0.02 4.32 16 18 C 0.03 0.62 5.48 -3.46 -0.02 0.60 16 19 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 20 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 23 H 0.08 1.13 6.40 -51.92 -0.33 0.80 16 24 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 28 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -29.50 283.54 -8.74 -38.24 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.56 Total: -3.30 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 0.97 Total: 2.02 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.98 Total: -52.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.41 Total: -5.78 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.50 -8.74 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159005944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.224 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds