Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81404 * 102.99557 * 2 1 4 4 C 1.53001 * 109.47084 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47384 * 179.97438 * 4 3 2 6 6 C 1.46903 * 111.00133 * 169.99963 * 5 4 3 7 7 C 1.53230 * 109.33899 * 187.25239 * 6 5 4 8 8 N 1.47080 * 108.52531 * 306.16795 * 7 6 5 9 9 C 1.36931 * 120.88364 * 231.18821 * 8 7 6 10 10 H 1.07994 * 120.00368 * 26.84029 * 9 8 7 11 11 C 1.38812 * 119.99721 * 206.56279 * 9 8 7 12 12 N 1.31619 * 120.00606 * 17.47328 * 11 9 8 13 13 Si 1.86807 * 119.99780 * 197.47555 * 11 9 8 14 14 H 1.48504 * 109.46947 * 94.38387 * 13 11 9 15 15 H 1.48508 * 109.46899 * 214.38152 * 13 11 9 16 16 H 1.48495 * 109.47303 * 334.38014 * 13 11 9 17 17 C 1.47082 * 118.23403 * 51.45931 * 8 7 6 18 18 C 1.46904 * 110.99940 * 294.30302 * 5 4 3 19 19 H 1.08999 * 109.46422 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46949 * 299.99475 * 1 2 3 21 21 H 1.08995 * 109.46946 * 60.00276 * 1 2 3 22 22 H 1.09000 * 109.47595 * 60.00080 * 3 2 1 23 23 H 1.09000 * 109.47176 * 299.99581 * 3 2 1 24 24 H 1.09000 * 109.46958 * 59.99545 * 4 3 2 25 25 H 1.09005 * 109.47254 * 300.00151 * 4 3 2 26 26 H 1.09001 * 109.49186 * 67.29185 * 6 5 4 27 27 H 1.09000 * 109.51153 * 307.22921 * 6 5 4 28 28 H 1.09004 * 109.63143 * 186.45915 * 7 6 5 29 29 H 1.09004 * 109.63158 * 65.88032 * 7 6 5 30 30 H 0.96993 * 120.00972 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.63087 * 68.24805 * 17 8 7 32 32 H 1.08996 * 109.63194 * 188.83501 * 17 8 7 33 33 H 1.09005 * 109.48966 * 292.70358 * 18 5 4 34 34 H 1.08995 * 109.49430 * 52.78410 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 7 4.0726 3.3715 -0.0013 6 6 5.5072 3.5807 0.2363 7 6 5.7797 5.0787 0.4084 8 7 5.2320 5.7903 -0.7565 9 6 6.0006 6.6746 -1.4651 10 1 7.0745 6.5618 -1.4847 11 6 5.3990 7.7128 -2.1631 12 7 4.1617 8.0639 -1.8834 13 14 6.3455 8.6117 -3.4994 14 1 6.0390 8.0022 -4.8184 15 1 5.9476 10.0425 -3.5107 16 1 7.8022 8.5052 -3.2313 17 6 3.8349 5.5312 -1.1364 18 6 3.6406 4.0109 -1.2513 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 1.8031 2.2372 0.8900 23 1 1.8031 2.2371 -0.8900 24 1 4.1608 1.4706 -0.8908 25 1 4.1616 1.4704 0.8891 26 1 6.0755 3.2029 -0.6137 27 1 5.8078 3.0501 1.1397 28 1 6.8544 5.2507 0.4704 29 1 5.2958 5.4370 1.3171 30 1 3.7414 8.7896 -2.3708 31 1 3.1676 5.9320 -0.3734 32 1 3.6230 6.0022 -2.0962 33 1 4.2350 3.6271 -2.0805 34 1 2.5873 3.7924 -1.4265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159005944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = 9.255711 kcal Electronic energy + Delta-G solvation = -14466.986716 eV Core-core repulsion = 12140.001254 eV Total energy + Delta-G solvation = -2326.985462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78219 -36.51362 -33.72252 -31.65991 -31.42681 -29.76751 -27.90968 -25.12411 -24.29280 -22.72202 -20.86122 -18.76580 -17.43487 -16.89711 -16.37083 -16.24405 -15.51679 -15.33303 -15.29783 -15.08765 -14.57937 -14.33222 -13.97526 -13.55524 -13.30011 -13.00749 -12.76133 -12.63723 -12.44713 -12.19399 -12.03716 -11.87227 -11.60443 -11.38153 -10.97691 -10.60176 -9.35130 -8.70686 -8.69516 -7.89108 -5.33719 0.67358 1.46330 1.47505 1.57029 1.64948 2.50037 3.03611 3.26496 3.65820 3.80492 3.96706 4.26208 4.32542 4.34146 4.36823 4.47152 4.50088 4.60128 4.67360 4.77826 4.82130 4.89441 4.94871 5.00514 5.18343 5.35145 5.60171 5.65422 6.11838 6.17264 6.36006 7.11817 7.82257 8.36589 9.17916 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049730 B = 0.005468 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.909045 B = 5119.623405 C = 5420.690720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.300 6.300 3 C -0.069 4.069 4 C 0.077 3.923 5 N -0.538 5.538 6 C 0.055 3.945 7 C 0.144 3.856 8 N -0.615 5.615 9 C -0.266 4.266 10 H 0.068 0.932 11 C -0.050 4.050 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.268 1.268 17 C 0.185 3.815 18 C 0.049 3.951 19 H 0.116 0.884 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.251 0.749 31 H 0.001 0.999 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 -14.534 3.372 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.076 6.076 3 C -0.217 4.217 4 C -0.051 4.051 5 N -0.264 5.264 6 C -0.074 4.074 7 C 0.018 3.982 8 N -0.339 5.339 9 C -0.396 4.396 10 H 0.086 0.914 11 C -0.245 4.245 12 N -0.582 5.582 13 Si 0.796 3.204 14 H -0.213 1.213 15 H -0.220 1.220 16 H -0.192 1.192 17 C 0.059 3.941 18 C -0.080 4.080 19 H 0.135 0.865 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.660 -15.052 3.698 16.185 hybrid contribution -0.128 1.543 -1.348 2.053 sum -4.788 -13.509 2.350 14.524 Atomic orbital electron populations 1.23433 0.90876 1.07616 1.05806 1.86806 1.11029 1.11584 1.98209 1.23289 0.99512 0.93376 1.05532 1.21734 0.93511 0.88210 1.01691 1.61914 1.17472 1.11831 1.35142 1.22486 0.86959 0.97500 1.00456 1.21141 0.97235 0.90707 0.89110 1.44438 1.10481 1.48202 1.30815 1.19569 0.91085 1.04674 1.24283 0.91419 1.25782 0.97850 0.97608 1.03280 1.70183 1.15111 1.30437 1.42484 0.85236 0.78612 0.77148 0.79356 1.21278 1.22028 1.19233 1.20720 0.84509 0.90483 0.98355 1.22720 0.99532 0.96311 0.89473 0.86542 0.89555 0.89880 0.89184 0.90256 0.94846 0.89221 0.95758 0.88548 0.91922 0.96411 0.94008 0.98134 0.92439 0.96351 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.76 113.37 1.22 -0.41 16 2 S -0.30 -6.68 22.38 -56.49 -1.26 -7.95 16 3 C -0.07 -1.69 5.87 71.98 0.42 -1.26 16 4 C 0.08 2.12 4.97 86.30 0.43 2.55 16 5 N -0.54 -18.55 4.63 -894.31 -4.14 -22.69 16 6 C 0.06 1.92 5.62 86.38 0.49 2.40 16 7 C 0.14 6.12 6.69 86.35 0.58 6.70 16 8 N -0.62 -31.91 3.03 -697.26 -2.11 -34.02 16 9 C -0.27 -14.93 9.63 84.03 0.81 -14.12 16 10 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 11 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 12 N -0.94 -55.97 11.16 21.65 0.24 -55.73 16 13 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.19 9.23 5.45 86.50 0.47 9.70 16 18 C 0.05 1.91 5.48 86.54 0.47 2.38 16 19 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.08 2.00 6.40 -2.39 -0.02 1.98 16 24 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 25 H 0.09 2.27 7.97 -2.38 -0.02 2.25 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 2.72 7.99 -2.39 -0.02 2.70 16 28 H 0.06 2.54 7.95 -2.38 -0.02 2.52 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 3.20 6.11 -2.39 -0.01 3.18 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 2.80 6.16 -2.39 -0.01 2.78 16 Total: -1.00 -63.49 283.54 1.11 -62.38 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.05 Total: 5.26 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.31 Total: 5.55 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -6.01 Total: -112.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -1.26 Total: -7.95 kcal Total: -63.49 1.11 -62.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159005944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.639 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds