Wall clock time and date at job start Mon Mar 30 2020 03:09:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81405 * 1
3 3 C 1.81404 * 102.99557 * 2 1
4 4 C 1.53001 * 109.47084 * 180.02562 * 3 2 1
5 5 N 1.46898 * 109.47384 * 179.97438 * 4 3 2
6 6 C 1.46903 * 111.00133 * 169.99963 * 5 4 3
7 7 C 1.53230 * 109.33899 * 187.25239 * 6 5 4
8 8 N 1.47080 * 108.52531 * 306.16795 * 7 6 5
9 9 C 1.36931 * 120.88364 * 231.18821 * 8 7 6
10 10 H 1.07994 * 120.00368 * 26.84029 * 9 8 7
11 11 C 1.38812 * 119.99721 * 206.56279 * 9 8 7
12 12 N 1.31619 * 120.00606 * 17.47328 * 11 9 8
13 13 Si 1.86807 * 119.99780 * 197.47555 * 11 9 8
14 14 H 1.48504 * 109.46947 * 94.38387 * 13 11 9
15 15 H 1.48508 * 109.46899 * 214.38152 * 13 11 9
16 16 H 1.48495 * 109.47303 * 334.38014 * 13 11 9
17 17 C 1.47082 * 118.23403 * 51.45931 * 8 7 6
18 18 C 1.46904 * 110.99940 * 294.30302 * 5 4 3
19 19 H 1.08999 * 109.46422 * 179.97438 * 1 2 3
20 20 H 1.09004 * 109.46949 * 299.99475 * 1 2 3
21 21 H 1.08995 * 109.46946 * 60.00276 * 1 2 3
22 22 H 1.09000 * 109.47595 * 60.00080 * 3 2 1
23 23 H 1.09000 * 109.47176 * 299.99581 * 3 2 1
24 24 H 1.09000 * 109.46958 * 59.99545 * 4 3 2
25 25 H 1.09005 * 109.47254 * 300.00151 * 4 3 2
26 26 H 1.09001 * 109.49186 * 67.29185 * 6 5 4
27 27 H 1.09000 * 109.51153 * 307.22921 * 6 5 4
28 28 H 1.09004 * 109.63143 * 186.45915 * 7 6 5
29 29 H 1.09004 * 109.63158 * 65.88032 * 7 6 5
30 30 H 0.96993 * 120.00972 * 179.97438 * 12 11 9
31 31 H 1.09000 * 109.63087 * 68.24805 * 17 8 7
32 32 H 1.08996 * 109.63194 * 188.83501 * 17 8 7
33 33 H 1.09005 * 109.48966 * 292.70358 * 18 5 4
34 34 H 1.08995 * 109.49430 * 52.78410 * 18 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 6 2.2220 1.7676 0.0000
4 6 3.7422 1.9401 -0.0006
5 7 4.0726 3.3715 -0.0013
6 6 5.5072 3.5807 0.2363
7 6 5.7797 5.0787 0.4084
8 7 5.2320 5.7903 -0.7565
9 6 6.0006 6.6746 -1.4651
10 1 7.0745 6.5618 -1.4847
11 6 5.3990 7.7128 -2.1631
12 7 4.1617 8.0639 -1.8834
13 14 6.3455 8.6117 -3.4994
14 1 6.0390 8.0022 -4.8184
15 1 5.9476 10.0425 -3.5107
16 1 7.8022 8.5052 -3.2313
17 6 3.8349 5.5312 -1.1364
18 6 3.6406 4.0109 -1.2513
19 1 -0.3632 -1.0277 -0.0005
20 1 -0.3633 0.5138 0.8901
21 1 -0.3633 0.5138 -0.8900
22 1 1.8031 2.2372 0.8900
23 1 1.8031 2.2371 -0.8900
24 1 4.1608 1.4706 -0.8908
25 1 4.1616 1.4704 0.8891
26 1 6.0755 3.2029 -0.6137
27 1 5.8078 3.0501 1.1397
28 1 6.8544 5.2507 0.4704
29 1 5.2958 5.4370 1.3171
30 1 3.7414 8.7896 -2.3708
31 1 3.1676 5.9320 -0.3734
32 1 3.6230 6.0022 -2.0962
33 1 4.2350 3.6271 -2.0805
34 1 2.5873 3.7924 -1.4265
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000159005944.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:30
Heat of formation + Delta-G solvation = 9.255711 kcal
Electronic energy + Delta-G solvation = -14466.986716 eV
Core-core repulsion = 12140.001254 eV
Total energy + Delta-G solvation = -2326.985462 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.115 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.78219 -36.51362 -33.72252 -31.65991 -31.42681 -29.76751 -27.90968 -25.12411
-24.29280 -22.72202 -20.86122 -18.76580 -17.43487 -16.89711 -16.37083 -16.24405
-15.51679 -15.33303 -15.29783 -15.08765 -14.57937 -14.33222 -13.97526 -13.55524
-13.30011 -13.00749 -12.76133 -12.63723 -12.44713 -12.19399 -12.03716 -11.87227
-11.60443 -11.38153 -10.97691 -10.60176 -9.35130 -8.70686 -8.69516 -7.89108
-5.33719 0.67358 1.46330 1.47505 1.57029 1.64948 2.50037 3.03611
3.26496 3.65820 3.80492 3.96706 4.26208 4.32542 4.34146 4.36823
4.47152 4.50088 4.60128 4.67360 4.77826 4.82130 4.89441 4.94871
5.00514 5.18343 5.35145 5.60171 5.65422 6.11838 6.17264 6.36006
7.11817 7.82257 8.36589 9.17916
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.049730 B = 0.005468 C = 0.005164
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 562.909045 B = 5119.623405 C = 5420.690720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 S -0.300 6.300
3 C -0.069 4.069
4 C 0.077 3.923
5 N -0.538 5.538
6 C 0.055 3.945
7 C 0.144 3.856
8 N -0.615 5.615
9 C -0.266 4.266
10 H 0.068 0.932
11 C -0.050 4.050
12 N -0.936 5.936
13 Si 0.968 3.032
14 H -0.286 1.286
15 H -0.294 1.294
16 H -0.268 1.268
17 C 0.185 3.815
18 C 0.049 3.951
19 H 0.116 0.884
20 H 0.085 0.915
21 H 0.082 0.918
22 H 0.090 0.910
23 H 0.079 0.921
24 H 0.033 0.967
25 H 0.089 0.911
26 H 0.024 0.976
27 H 0.096 0.904
28 H 0.062 0.938
29 H 0.018 0.982
30 H 0.251 0.749
31 H 0.001 0.999
32 H 0.057 0.943
33 H 0.018 0.982
34 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.013 -14.534 3.372 15.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.277 4.277
2 S -0.076 6.076
3 C -0.217 4.217
4 C -0.051 4.051
5 N -0.264 5.264
6 C -0.074 4.074
7 C 0.018 3.982
8 N -0.339 5.339
9 C -0.396 4.396
10 H 0.086 0.914
11 C -0.245 4.245
12 N -0.582 5.582
13 Si 0.796 3.204
14 H -0.213 1.213
15 H -0.220 1.220
16 H -0.192 1.192
17 C 0.059 3.941
18 C -0.080 4.080
19 H 0.135 0.865
20 H 0.104 0.896
21 H 0.101 0.899
22 H 0.108 0.892
23 H 0.097 0.903
24 H 0.052 0.948
25 H 0.108 0.892
26 H 0.042 0.958
27 H 0.115 0.885
28 H 0.081 0.919
29 H 0.036 0.964
30 H 0.060 0.940
31 H 0.019 0.981
32 H 0.076 0.924
33 H 0.036 0.964
34 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -4.660 -15.052 3.698 16.185
hybrid contribution -0.128 1.543 -1.348 2.053
sum -4.788 -13.509 2.350 14.524
Atomic orbital electron populations
1.23433 0.90876 1.07616 1.05806 1.86806 1.11029 1.11584 1.98209
1.23289 0.99512 0.93376 1.05532 1.21734 0.93511 0.88210 1.01691
1.61914 1.17472 1.11831 1.35142 1.22486 0.86959 0.97500 1.00456
1.21141 0.97235 0.90707 0.89110 1.44438 1.10481 1.48202 1.30815
1.19569 0.91085 1.04674 1.24283 0.91419 1.25782 0.97850 0.97608
1.03280 1.70183 1.15111 1.30437 1.42484 0.85236 0.78612 0.77148
0.79356 1.21278 1.22028 1.19233 1.20720 0.84509 0.90483 0.98355
1.22720 0.99532 0.96311 0.89473 0.86542 0.89555 0.89880 0.89184
0.90256 0.94846 0.89221 0.95758 0.88548 0.91922 0.96411 0.94008
0.98134 0.92439 0.96351 0.90079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.63 10.76 113.37 1.22 -0.41 16
2 S -0.30 -6.68 22.38 -56.49 -1.26 -7.95 16
3 C -0.07 -1.69 5.87 71.98 0.42 -1.26 16
4 C 0.08 2.12 4.97 86.30 0.43 2.55 16
5 N -0.54 -18.55 4.63 -894.31 -4.14 -22.69 16
6 C 0.06 1.92 5.62 86.38 0.49 2.40 16
7 C 0.14 6.12 6.69 86.35 0.58 6.70 16
8 N -0.62 -31.91 3.03 -697.26 -2.11 -34.02 16
9 C -0.27 -14.93 9.63 84.03 0.81 -14.12 16
10 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16
11 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16
12 N -0.94 -55.97 11.16 21.65 0.24 -55.73 16
13 Si 0.97 45.17 29.59 68.60 2.03 47.20 16
14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
17 C 0.19 9.23 5.45 86.50 0.47 9.70 16
18 C 0.05 1.91 5.48 86.54 0.47 2.38 16
19 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
20 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
21 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
23 H 0.08 2.00 6.40 -2.39 -0.02 1.98 16
24 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16
25 H 0.09 2.27 7.97 -2.38 -0.02 2.25 16
26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
27 H 0.10 2.72 7.99 -2.39 -0.02 2.70 16
28 H 0.06 2.54 7.95 -2.38 -0.02 2.52 16
29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16
30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16
31 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16
32 H 0.06 3.20 6.11 -2.39 -0.01 3.18 16
33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16
34 H 0.08 2.80 6.16 -2.39 -0.01 2.78 16
Total: -1.00 -63.49 283.54 1.11 -62.38
By element:
Atomic # 1 Polarization: 4.21 SS G_CDS: 1.05 Total: 5.26 kcal
Atomic # 6 Polarization: 0.25 SS G_CDS: 5.31 Total: 5.55 kcal
Atomic # 7 Polarization: -106.43 SS G_CDS: -6.01 Total: -112.44 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal
Atomic # 16 Polarization: -6.68 SS G_CDS: -1.26 Total: -7.95 kcal
Total: -63.49 1.11 -62.38 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000159005944.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.639 kcal
(2) G-P(sol) polarization free energy of solvation -63.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds