Wall clock time and date at job start Mon Mar 30 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47477 * 120.00266 * 2 1 3 5 5 H 1.09004 * 109.47044 * 303.38601 * 4 2 1 6 6 C 1.50705 * 109.47195 * 63.38119 * 4 2 1 7 7 H 1.08000 * 119.99492 * 26.25486 * 6 4 2 8 8 C 1.37878 * 120.00210 * 206.25000 * 6 4 2 9 9 N 1.31512 * 119.99628 * 185.34944 * 8 6 4 10 10 Si 1.86797 * 119.99966 * 5.35872 * 8 6 4 11 11 H 1.48498 * 109.47247 * 84.49766 * 10 8 6 12 12 H 1.48496 * 109.47005 * 204.49791 * 10 8 6 13 13 H 1.48500 * 109.47047 * 324.50132 * 10 8 6 14 14 C 1.50701 * 109.47270 * 183.38318 * 4 2 1 15 15 C 1.38504 * 119.54333 * 275.01924 * 14 4 2 16 16 C 1.38654 * 119.37836 * 179.97438 * 15 14 4 17 17 C 1.38535 * 118.51126 * 359.72840 * 16 15 14 18 18 C 1.39419 * 119.04754 * 0.53707 * 17 16 15 19 19 C 1.43199 * 119.73785 * 179.73148 * 18 17 16 20 20 N 6.46985 * 140.41181 * 56.11328 * 2 1 3 21 21 N 1.31563 * 119.54046 * 95.00072 * 14 4 2 22 22 H 1.08999 * 109.47255 * 304.53712 * 1 2 3 23 23 H 1.08999 * 109.47343 * 64.53847 * 1 2 3 24 24 H 1.09004 * 109.47079 * 184.53693 * 1 2 3 25 25 H 1.09007 * 109.46904 * 240.00195 * 2 1 3 26 26 H 1.09001 * 109.46914 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46757 * 300.00532 * 3 2 1 28 28 H 1.09000 * 109.46737 * 60.00008 * 3 2 1 29 29 H 0.97005 * 119.99465 * 180.02562 * 9 8 6 30 30 H 1.07998 * 120.30968 * 0.02562 * 15 14 4 31 31 H 1.08003 * 120.74382 * 180.02562 * 16 15 14 32 32 H 1.07996 * 120.47804 * 180.26064 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6280 -0.2437 2.1382 6 6 1.6074 -2.1643 1.2079 7 1 1.4193 -2.6447 0.2591 8 6 1.4517 -2.8712 2.3815 9 7 1.1770 -4.1567 2.3432 10 14 1.6306 -2.0028 4.0256 11 1 0.3401 -1.3660 4.3922 12 1 2.0092 -2.9901 5.0682 13 1 2.6847 -0.9618 3.9234 14 6 3.5448 -0.6491 1.2917 15 6 4.2934 -1.5877 0.6012 16 6 5.6775 -1.5177 0.6423 17 6 6.2667 -0.4996 1.3741 18 6 5.4516 0.4077 2.0495 19 6 6.0451 1.4624 2.8150 20 7 6.5159 2.2988 3.4227 21 7 4.1290 0.3050 1.9841 22 1 -0.3634 0.5826 0.8465 23 1 -0.3634 0.4418 -0.9278 24 1 -0.3633 -1.0245 0.0813 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.0672 -4.6539 3.1688 30 1 3.8035 -2.3663 0.0353 31 1 6.2827 -2.2379 0.1117 32 1 7.3420 -0.4127 1.4243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167066282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:12 Heat of formation + Delta-G solvation = 48.309751 kcal Electronic energy + Delta-G solvation = -15684.826926 eV Core-core repulsion = 13224.091023 eV Total energy + Delta-G solvation = -2460.735903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00162 -36.65036 -35.76598 -32.53513 -32.12472 -31.19730 -27.94913 -26.38551 -24.25627 -23.48412 -21.69560 -19.60649 -18.14753 -16.94547 -15.90510 -15.61101 -14.74167 -14.38603 -14.24287 -13.51779 -13.29496 -12.91288 -12.75262 -12.58424 -12.48071 -12.11300 -11.92419 -11.53158 -11.52033 -10.97154 -10.80279 -10.42024 -10.22710 -9.82949 -9.75445 -9.38715 -9.29578 -9.09419 -8.63045 -8.32320 -6.24927 -4.27102 1.06966 1.69417 2.75222 3.19330 3.25380 3.34747 3.45869 3.87718 4.32985 4.37571 4.89857 5.17272 5.29225 5.48014 5.53144 5.70558 5.78302 5.88977 5.94884 6.21257 6.28094 6.44543 6.48845 6.52074 6.61507 6.66337 6.80694 6.92385 7.10938 7.22048 7.27691 7.54683 7.57918 8.26393 8.47881 8.79061 9.37961 10.85776 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.010984 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.200939 B = 2548.603706 C = 2949.233884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 C -0.145 4.145 4 C 0.060 3.940 5 H 0.053 0.947 6 C -0.513 4.513 7 H 0.082 0.918 8 C 0.083 3.917 9 N -0.887 5.887 10 Si 0.855 3.145 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.249 1.249 14 C 0.171 3.829 15 C -0.108 4.108 16 C -0.092 4.092 17 C -0.143 4.143 18 C 0.163 3.837 19 C 0.283 3.717 20 N -0.421 5.421 21 N -0.460 5.460 22 H 0.043 0.957 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.266 0.734 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 4.612 -5.021 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.203 4.203 4 C 0.040 3.960 5 H 0.071 0.929 6 C -0.551 4.551 7 H 0.100 0.900 8 C -0.121 4.121 9 N -0.523 5.523 10 Si 0.681 3.319 11 H -0.198 1.198 12 H -0.217 1.217 13 H -0.173 1.173 14 C 0.031 3.969 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.167 4.167 18 C 0.026 3.974 19 C -0.034 4.034 20 N -0.098 5.098 21 N -0.171 5.171 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.479 6.342 -3.513 9.088 hybrid contribution 0.493 -0.687 0.487 0.976 sum 5.973 5.656 -3.026 8.764 Atomic orbital electron populations 1.21715 0.95240 1.02888 0.99348 1.20962 0.95846 0.94012 0.98349 1.21909 1.00519 0.97376 1.00466 1.18399 0.84101 0.97733 0.95788 0.92913 1.20823 1.46322 0.92953 0.94962 0.89959 1.25000 0.93707 0.94480 0.98934 1.69882 1.47099 1.07027 1.28300 0.87132 0.80236 0.80442 0.84076 1.19778 1.21655 1.17310 1.22681 0.99587 0.86675 0.87976 1.22437 0.93141 0.99096 0.98176 1.21547 0.95412 0.97041 0.97706 1.21749 1.00264 0.95787 0.98855 1.16405 0.90375 0.92625 0.98038 1.25297 0.92719 0.92489 0.92864 1.81158 1.09598 1.09861 1.09180 1.67618 1.08530 1.23177 1.17744 0.93776 0.94522 0.90843 0.91951 0.93501 0.94047 0.93015 0.92373 0.82966 0.84525 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.07 37.16 0.34 -1.99 16 2 C -0.07 -1.31 2.49 -90.62 -0.23 -1.54 16 3 C -0.15 -2.39 8.78 37.16 0.33 -2.07 16 4 C 0.06 1.25 1.26 -92.92 -0.12 1.14 16 5 H 0.05 1.20 5.83 -51.93 -0.30 0.90 16 6 C -0.51 -12.35 6.21 -34.44 -0.21 -12.56 16 7 H 0.08 2.11 8.06 -52.49 -0.42 1.68 16 8 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.89 -24.72 13.96 55.43 0.77 -23.95 16 10 Si 0.85 20.50 26.72 -169.99 -4.54 15.96 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.25 -5.97 6.52 56.52 0.37 -5.60 16 14 C 0.17 3.38 3.93 -82.61 -0.32 3.06 16 15 C -0.11 -1.89 9.18 -39.33 -0.36 -2.25 16 16 C -0.09 -1.30 10.17 -39.32 -0.40 -1.70 16 17 C -0.14 -2.03 9.80 -39.03 -0.38 -2.41 16 18 C 0.16 2.80 6.58 -85.07 -0.56 2.24 16 19 C 0.28 4.86 15.53 -22.47 -0.35 4.51 16 20 N -0.42 -7.56 18.54 41.84 0.78 -6.78 16 21 N -0.46 -9.08 9.36 -7.40 -0.07 -9.15 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.39 7.18 -51.93 -0.37 1.02 16 25 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 26 H 0.05 0.79 6.68 -51.93 -0.35 0.44 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.15 2.70 7.19 -52.49 -0.38 2.32 16 31 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -27.50 277.83 -5.19 -32.69 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.95 Total: -1.46 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.37 Total: -11.49 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 1.48 Total: -39.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.54 Total: 15.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.50 -5.19 -32.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167066282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.001 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds