Wall clock time and date at job start Mon Mar 30 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47477 * 120.00266 * 2 1 3 5 5 H 1.09004 * 109.47044 * 303.38601 * 4 2 1 6 6 C 1.50705 * 109.47195 * 63.38119 * 4 2 1 7 7 H 1.08000 * 119.99492 * 26.25486 * 6 4 2 8 8 C 1.37878 * 120.00210 * 206.25000 * 6 4 2 9 9 N 1.31512 * 119.99628 * 185.34944 * 8 6 4 10 10 Si 1.86797 * 119.99966 * 5.35872 * 8 6 4 11 11 H 1.48498 * 109.47247 * 84.49766 * 10 8 6 12 12 H 1.48496 * 109.47005 * 204.49791 * 10 8 6 13 13 H 1.48500 * 109.47047 * 324.50132 * 10 8 6 14 14 C 1.50701 * 109.47270 * 183.38318 * 4 2 1 15 15 C 1.38504 * 119.54333 * 275.01924 * 14 4 2 16 16 C 1.38654 * 119.37836 * 179.97438 * 15 14 4 17 17 C 1.38535 * 118.51126 * 359.72840 * 16 15 14 18 18 C 1.39419 * 119.04754 * 0.53707 * 17 16 15 19 19 C 1.43199 * 119.73785 * 179.73148 * 18 17 16 20 20 N 6.46985 * 140.41181 * 56.11328 * 2 1 3 21 21 N 1.31563 * 119.54046 * 95.00072 * 14 4 2 22 22 H 1.08999 * 109.47255 * 304.53712 * 1 2 3 23 23 H 1.08999 * 109.47343 * 64.53847 * 1 2 3 24 24 H 1.09004 * 109.47079 * 184.53693 * 1 2 3 25 25 H 1.09007 * 109.46904 * 240.00195 * 2 1 3 26 26 H 1.09001 * 109.46914 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46757 * 300.00532 * 3 2 1 28 28 H 1.09000 * 109.46737 * 60.00008 * 3 2 1 29 29 H 0.97005 * 119.99465 * 180.02562 * 9 8 6 30 30 H 1.07998 * 120.30968 * 0.02562 * 15 14 4 31 31 H 1.08003 * 120.74382 * 180.02562 * 16 15 14 32 32 H 1.07996 * 120.47804 * 180.26064 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6280 -0.2437 2.1382 6 6 1.6074 -2.1643 1.2079 7 1 1.4193 -2.6447 0.2591 8 6 1.4517 -2.8712 2.3815 9 7 1.1770 -4.1567 2.3432 10 14 1.6306 -2.0028 4.0256 11 1 0.3401 -1.3660 4.3922 12 1 2.0092 -2.9901 5.0682 13 1 2.6847 -0.9618 3.9234 14 6 3.5448 -0.6491 1.2917 15 6 4.2934 -1.5877 0.6012 16 6 5.6775 -1.5177 0.6423 17 6 6.2667 -0.4996 1.3741 18 6 5.4516 0.4077 2.0495 19 6 6.0451 1.4624 2.8150 20 7 6.5159 2.2988 3.4227 21 7 4.1290 0.3050 1.9841 22 1 -0.3634 0.5826 0.8465 23 1 -0.3634 0.4418 -0.9278 24 1 -0.3633 -1.0245 0.0813 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.0672 -4.6539 3.1688 30 1 3.8035 -2.3663 0.0353 31 1 6.2827 -2.2379 0.1117 32 1 7.3420 -0.4127 1.4243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167066282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:12 Heat of formation + Delta-G solvation = 32.819722 kcal Electronic energy + Delta-G solvation = -15685.498624 eV Core-core repulsion = 13224.091023 eV Total energy + Delta-G solvation = -2461.407601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36072 -38.09032 -37.20150 -34.41014 -33.42809 -32.61925 -29.59920 -27.76350 -25.57661 -25.18196 -23.09385 -21.02164 -19.68230 -18.73636 -17.31861 -16.86974 -16.49728 -15.79201 -15.70036 -15.06117 -14.71755 -14.42372 -14.23155 -14.14526 -13.81195 -13.51520 -13.45776 -13.02381 -12.87337 -12.79709 -12.31975 -12.05909 -11.80665 -11.53003 -11.29501 -11.05717 -10.79565 -10.66686 -10.33780 -9.69275 -8.27304 -6.27444 -0.23734 0.43695 1.30901 1.38150 1.41082 1.51002 1.85400 2.35815 2.55484 3.02000 3.09277 3.80966 4.11307 4.20523 4.24317 4.32358 4.38654 4.51369 4.68081 4.87142 4.97005 5.03112 5.09991 5.17525 5.24903 5.29507 5.40515 5.50296 5.58091 5.74570 5.77359 5.85357 6.24556 6.34152 6.80596 7.05994 7.38683 8.86912 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.010984 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.200939 B = 2548.603706 C = 2949.233884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.135 4.135 4 C 0.059 3.941 5 H 0.033 0.967 6 C -0.486 4.486 7 H 0.061 0.939 8 C 0.040 3.960 9 N -0.932 5.932 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.248 1.248 14 C 0.149 3.851 15 C -0.123 4.123 16 C -0.072 4.072 17 C -0.120 4.120 18 C 0.148 3.852 19 C 0.295 3.705 20 N -0.438 5.438 21 N -0.487 5.487 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.143 0.857 31 H 0.181 0.819 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 5.582 -5.926 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.192 4.192 4 C 0.039 3.961 5 H 0.051 0.949 6 C -0.524 4.524 7 H 0.079 0.921 8 C -0.160 4.160 9 N -0.571 5.571 10 Si 0.726 3.274 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.172 1.172 14 C 0.009 3.991 15 C -0.144 4.144 16 C -0.098 4.098 17 C -0.142 4.142 18 C 0.010 3.990 19 C -0.021 4.021 20 N -0.116 5.116 21 N -0.198 5.198 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.199 0.801 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.405 7.339 -4.422 11.324 hybrid contribution -0.036 -0.934 0.674 1.153 sum 7.369 6.404 -3.747 10.457 Atomic orbital electron populations 1.21676 0.94822 1.01558 1.00862 1.20955 0.96213 0.94980 0.97001 1.21789 1.00112 0.96057 1.01268 1.18294 0.85811 0.95557 0.96390 0.94919 1.20948 1.43769 0.94232 0.93488 0.92122 1.25477 0.94595 0.94742 1.01164 1.69978 1.50356 1.08246 1.28527 0.86435 0.79974 0.79342 0.81684 1.19874 1.22405 1.17202 1.22171 0.98623 0.88259 0.90014 1.22450 0.94983 0.98539 0.98411 1.21987 0.94054 0.97196 0.96528 1.22194 1.02091 0.93748 0.96176 1.16610 0.89942 0.93479 0.98924 1.25291 0.92270 0.92168 0.92417 1.81174 1.10314 1.10317 1.09762 1.67412 1.10229 1.23787 1.18367 0.93858 0.91678 0.93301 0.91574 0.93990 0.91571 0.93791 0.92708 0.83916 0.80133 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.07 71.98 0.65 -3.81 16 2 C -0.07 -2.56 2.49 -10.79 -0.03 -2.58 16 3 C -0.13 -4.21 8.78 71.98 0.63 -3.58 16 4 C 0.06 2.50 1.26 -12.28 -0.02 2.48 16 5 H 0.03 1.50 5.83 -2.38 -0.01 1.48 16 6 C -0.49 -23.83 6.21 25.60 0.16 -23.67 16 7 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 8 C 0.04 2.10 5.47 84.66 0.46 2.57 16 9 N -0.93 -53.34 13.96 21.45 0.30 -53.04 16 10 Si 0.90 43.11 26.72 68.60 1.83 44.94 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 13 H -0.25 -11.77 6.52 99.48 0.65 -11.12 16 14 C 0.15 5.75 3.93 42.66 0.17 5.92 16 15 C -0.12 -4.09 9.18 22.43 0.21 -3.88 16 16 C -0.07 -1.75 10.17 22.44 0.23 -1.52 16 17 C -0.12 -2.84 9.80 22.63 0.22 -2.62 16 18 C 0.15 4.68 6.58 40.52 0.27 4.95 16 19 C 0.29 9.46 15.53 88.33 1.37 10.83 16 20 N -0.44 -14.92 18.54 19.00 0.35 -14.56 16 21 N -0.49 -18.53 9.36 -177.33 -1.66 -20.19 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.87 7.18 -2.39 -0.02 1.85 16 25 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.04 1.34 6.68 -2.39 -0.02 1.33 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 30 H 0.14 4.96 7.19 -2.91 -0.02 4.94 16 31 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -60.55 277.83 6.21 -54.34 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.06 Total: 3.44 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.33 Total: -14.93 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.01 Total: -87.79 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.83 Total: 44.94 kcal Total: -60.55 6.21 -54.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167066282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.158 kcal (2) G-P(sol) polarization free energy of solvation -60.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds