Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47434 * 2 1 4 4 C 1.53005 * 109.46920 * 120.00168 * 2 1 3 5 5 H 1.08994 * 109.46821 * 300.03335 * 4 2 1 6 6 C 1.50704 * 109.46785 * 180.02562 * 4 2 1 7 7 H 1.07994 * 120.00281 * 334.63212 * 6 4 2 8 8 C 1.37875 * 119.99488 * 154.63546 * 6 4 2 9 9 N 1.31517 * 120.00437 * 7.39123 * 8 6 4 10 10 Si 1.86801 * 119.99865 * 187.11942 * 8 6 4 11 11 H 1.48494 * 109.47335 * 180.27235 * 10 8 6 12 12 H 1.48499 * 109.47063 * 300.27599 * 10 8 6 13 13 H 1.48505 * 109.46736 * 60.27491 * 10 8 6 14 14 C 1.50691 * 109.47094 * 60.03348 * 4 2 1 15 15 C 1.38508 * 119.54568 * 85.00390 * 14 4 2 16 16 C 1.38661 * 119.38202 * 179.97438 * 15 14 4 17 17 C 1.38532 * 118.50491 * 359.97438 * 16 15 14 18 18 C 1.39417 * 119.05495 * 0.02562 * 17 16 15 19 19 C 1.43199 * 119.73657 * 179.97438 * 18 17 16 20 20 N 6.47036 * 54.85995 * 142.27543 * 2 1 3 21 21 N 1.31570 * 119.54271 * 264.72414 * 14 4 2 22 22 H 1.08998 * 109.46962 * 300.00608 * 1 2 3 23 23 H 1.08997 * 109.46882 * 59.99949 * 1 2 3 24 24 H 1.08993 * 109.47021 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46796 * 239.99716 * 2 1 3 26 26 H 1.08997 * 109.47181 * 185.39528 * 3 2 1 27 27 H 1.09007 * 109.46895 * 305.40076 * 3 2 1 28 28 H 1.08998 * 109.47257 * 65.39401 * 3 2 1 29 29 H 0.97003 * 119.99898 * 354.91361 * 9 8 6 30 30 H 1.08002 * 120.30852 * 359.97438 * 15 14 4 31 31 H 1.07995 * 120.74556 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.47192 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6762 -0.2078 2.1392 6 6 3.5470 -0.7208 1.2496 7 1 4.0872 -0.6449 0.3175 8 6 4.2361 -0.8172 2.4399 9 7 3.5866 -1.0553 3.5584 10 14 6.0933 -0.6172 2.4628 11 1 6.5905 -0.7704 3.8536 12 1 6.7134 -1.6532 1.5984 13 1 6.4521 0.7312 1.9545 14 6 1.5383 -2.1423 1.2488 15 6 2.2420 -3.1148 0.5577 16 6 1.7776 -4.4213 0.5600 17 6 0.6172 -4.7093 1.2597 18 6 -0.0402 -3.6808 1.9333 19 6 -1.2412 -3.9620 2.6607 20 7 -2.1942 -4.1851 3.2375 21 7 0.4410 -2.4431 1.9094 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1258 1.4439 -0.0966 27 1 1.5999 1.9835 -0.8377 28 1 1.7578 1.9277 0.9343 29 1 2.6172 -1.0898 3.5584 30 1 3.1439 -2.8578 0.0221 31 1 2.3091 -5.1971 0.0289 32 1 0.2269 -5.7160 1.2824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167066395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = 42.560595 kcal Electronic energy + Delta-G solvation = -15645.868389 eV Core-core repulsion = 13184.883184 eV Total energy + Delta-G solvation = -2460.985205 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90645 -36.61410 -35.74907 -32.65492 -32.07032 -30.96534 -27.14338 -26.35319 -24.21913 -23.50336 -21.71274 -19.59220 -18.45774 -16.68185 -15.98001 -15.56992 -14.44069 -14.31236 -13.86191 -13.65388 -13.30766 -13.05347 -12.83519 -12.47136 -12.28620 -12.14115 -11.72457 -11.50639 -11.22053 -10.94617 -10.76341 -10.31689 -10.20771 -10.13017 -9.69695 -9.32097 -9.02831 -8.76183 -8.54426 -8.13164 -6.48694 -4.24103 1.14212 1.77528 2.82456 3.26714 3.35573 3.38400 3.56427 3.95287 4.41293 4.46584 5.03133 5.23702 5.35529 5.54985 5.60191 5.74955 5.81474 5.91892 5.99070 6.26036 6.31388 6.48605 6.51300 6.54389 6.63058 6.73009 6.88982 6.96850 7.09783 7.30058 7.39164 7.65070 7.98040 8.28598 8.54629 8.72442 9.49894 10.90091 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.009646 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.617084 B = 2902.210530 C = 3461.441102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.127 4.127 4 C 0.075 3.925 5 H 0.054 0.946 6 C -0.594 4.594 7 H 0.057 0.943 8 C 0.026 3.974 9 N -0.898 5.898 10 Si 1.063 2.937 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.180 3.820 15 C -0.112 4.112 16 C -0.093 4.093 17 C -0.147 4.147 18 C 0.166 3.834 19 C 0.284 3.716 20 N -0.421 5.421 21 N -0.460 5.460 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -3.010 -8.036 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.184 4.184 4 C 0.055 3.945 5 H 0.072 0.928 6 C -0.632 4.632 7 H 0.076 0.924 8 C -0.181 4.181 9 N -0.532 5.532 10 Si 0.891 3.109 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.212 1.212 14 C 0.040 3.960 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.170 4.170 18 C 0.029 3.971 19 C -0.033 4.033 20 N -0.098 5.098 21 N -0.171 5.171 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.760 -2.774 -5.676 6.558 hybrid contribution -0.507 -0.674 -1.511 1.731 sum -2.267 -3.448 -7.187 8.287 Atomic orbital electron populations 1.21892 0.97040 1.00896 1.00349 1.20991 0.93356 0.96486 0.98504 1.21631 1.01789 0.95306 0.99673 1.18154 0.96040 0.85101 0.95193 0.92771 1.21772 0.89427 1.56569 0.95480 0.92432 1.25834 1.06847 0.93024 0.92394 1.70759 1.11009 1.42272 1.29149 0.83612 0.74426 0.76671 0.76149 1.20863 1.21368 1.21190 1.22795 0.85957 0.99984 0.87215 1.22357 1.00244 0.92305 0.98400 1.21506 0.95089 0.97284 0.97917 1.21710 0.96946 0.99008 0.99308 1.16420 0.91011 0.91510 0.98182 1.25300 0.92350 0.92790 0.92867 1.81149 1.11007 1.08654 1.09035 1.67631 1.13705 1.17869 1.17902 0.93008 0.94226 0.93514 0.92609 0.91726 0.94860 0.93474 0.91254 0.83596 0.84767 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.87 37.16 0.33 -2.20 16 2 C -0.07 -1.41 2.48 -90.62 -0.23 -1.63 16 3 C -0.13 -2.27 8.84 37.16 0.33 -1.94 16 4 C 0.07 1.66 1.31 -92.92 -0.12 1.54 16 5 H 0.05 1.38 7.00 -51.93 -0.36 1.01 16 6 C -0.59 -14.25 5.69 -34.44 -0.20 -14.44 16 7 H 0.06 1.34 7.76 -52.49 -0.41 0.94 16 8 C 0.03 0.67 5.45 -17.82 -0.10 0.58 16 9 N -0.90 -25.37 13.63 55.43 0.76 -24.62 16 10 Si 1.06 23.00 29.91 -169.99 -5.08 17.92 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -5.89 7.11 56.52 0.40 -5.48 16 13 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.18 3.78 4.55 -82.61 -0.38 3.41 16 15 C -0.11 -2.07 9.18 -39.33 -0.36 -2.43 16 16 C -0.09 -1.40 10.17 -39.32 -0.40 -1.80 16 17 C -0.15 -2.23 9.80 -39.03 -0.38 -2.61 16 18 C 0.17 3.03 6.58 -85.08 -0.56 2.47 16 19 C 0.28 5.13 15.53 -22.47 -0.35 4.78 16 20 N -0.42 -7.91 18.54 41.84 0.78 -7.13 16 21 N -0.46 -9.62 9.48 -7.40 -0.07 -9.69 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.84 6.76 -51.93 -0.35 0.49 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.20 7.37 -51.93 -0.38 0.82 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.28 7.94 6.62 -40.82 -0.27 7.67 16 30 H 0.15 2.65 7.19 -52.49 -0.38 2.27 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 280.85 15.07 4.23 4.23 Total: -1.00 -27.55 280.85 -5.71 -33.25 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.91 Total: 0.30 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.41 Total: -14.27 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 1.46 Total: -41.44 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.08 Total: 17.92 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.55 -5.71 -33.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167066395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.814 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds