Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47434 * 2 1 4 4 C 1.53005 * 109.46920 * 120.00168 * 2 1 3 5 5 H 1.08994 * 109.46821 * 300.03335 * 4 2 1 6 6 C 1.50704 * 109.46785 * 180.02562 * 4 2 1 7 7 H 1.07994 * 120.00281 * 334.63212 * 6 4 2 8 8 C 1.37875 * 119.99488 * 154.63546 * 6 4 2 9 9 N 1.31517 * 120.00437 * 7.39123 * 8 6 4 10 10 Si 1.86801 * 119.99865 * 187.11942 * 8 6 4 11 11 H 1.48494 * 109.47335 * 180.27235 * 10 8 6 12 12 H 1.48499 * 109.47063 * 300.27599 * 10 8 6 13 13 H 1.48505 * 109.46736 * 60.27491 * 10 8 6 14 14 C 1.50691 * 109.47094 * 60.03348 * 4 2 1 15 15 C 1.38508 * 119.54568 * 85.00390 * 14 4 2 16 16 C 1.38661 * 119.38202 * 179.97438 * 15 14 4 17 17 C 1.38532 * 118.50491 * 359.97438 * 16 15 14 18 18 C 1.39417 * 119.05495 * 0.02562 * 17 16 15 19 19 C 1.43199 * 119.73657 * 179.97438 * 18 17 16 20 20 N 6.47036 * 54.85995 * 142.27543 * 2 1 3 21 21 N 1.31570 * 119.54271 * 264.72414 * 14 4 2 22 22 H 1.08998 * 109.46962 * 300.00608 * 1 2 3 23 23 H 1.08997 * 109.46882 * 59.99949 * 1 2 3 24 24 H 1.08993 * 109.47021 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46796 * 239.99716 * 2 1 3 26 26 H 1.08997 * 109.47181 * 185.39528 * 3 2 1 27 27 H 1.09007 * 109.46895 * 305.40076 * 3 2 1 28 28 H 1.08998 * 109.47257 * 65.39401 * 3 2 1 29 29 H 0.97003 * 119.99898 * 354.91361 * 9 8 6 30 30 H 1.08002 * 120.30852 * 359.97438 * 15 14 4 31 31 H 1.07995 * 120.74556 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.47192 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6762 -0.2078 2.1392 6 6 3.5470 -0.7208 1.2496 7 1 4.0872 -0.6449 0.3175 8 6 4.2361 -0.8172 2.4399 9 7 3.5866 -1.0553 3.5584 10 14 6.0933 -0.6172 2.4628 11 1 6.5905 -0.7704 3.8536 12 1 6.7134 -1.6532 1.5984 13 1 6.4521 0.7312 1.9545 14 6 1.5383 -2.1423 1.2488 15 6 2.2420 -3.1148 0.5577 16 6 1.7776 -4.4213 0.5600 17 6 0.6172 -4.7093 1.2597 18 6 -0.0402 -3.6808 1.9333 19 6 -1.2412 -3.9620 2.6607 20 7 -2.1942 -4.1851 3.2375 21 7 0.4410 -2.4431 1.9094 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1258 1.4439 -0.0966 27 1 1.5999 1.9835 -0.8377 28 1 1.7578 1.9277 0.9343 29 1 2.6172 -1.0898 3.5584 30 1 3.1439 -2.8578 0.0221 31 1 2.3091 -5.1971 0.0289 32 1 0.2269 -5.7160 1.2824 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167066395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = 27.630611 kcal Electronic energy + Delta-G solvation = -15646.515802 eV Core-core repulsion = 13184.883184 eV Total energy + Delta-G solvation = -2461.632618 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.34035 -38.14453 -37.26155 -34.46195 -33.44167 -32.44719 -28.82255 -27.82074 -25.66288 -25.26056 -23.16407 -21.10014 -20.02911 -18.43158 -17.44082 -16.90329 -15.94882 -15.74348 -15.55460 -15.30891 -14.78080 -14.57645 -14.25306 -13.99332 -13.72535 -13.59716 -13.25334 -12.89734 -12.82303 -12.57079 -12.38794 -11.94227 -11.81785 -11.66571 -11.26788 -10.73998 -10.64647 -10.51997 -10.27485 -9.64675 -8.49888 -6.23467 -0.24798 0.44862 1.37871 1.61522 1.67944 1.83350 1.85125 2.54783 2.65232 3.03457 3.27505 3.81954 4.10233 4.20710 4.22230 4.29356 4.34574 4.47663 4.65362 4.84197 4.90638 4.99594 5.08458 5.14931 5.19236 5.25514 5.37626 5.46717 5.59822 5.73613 5.84686 6.13454 6.21657 6.32827 6.70634 7.09510 7.58308 8.88325 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.009646 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.617084 B = 2902.210530 C = 3461.441102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 C -0.123 4.123 4 C 0.075 3.925 5 H 0.008 0.992 6 C -0.579 4.579 7 H 0.065 0.935 8 C -0.025 4.025 9 N -0.939 5.939 10 Si 1.104 2.896 11 H -0.299 1.299 12 H -0.264 1.264 13 H -0.271 1.271 14 C 0.157 3.843 15 C -0.128 4.128 16 C -0.074 4.074 17 C -0.125 4.125 18 C 0.147 3.853 19 C 0.294 3.706 20 N -0.438 5.438 21 N -0.494 5.494 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.258 0.742 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -4.547 -10.267 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.180 4.180 4 C 0.055 3.945 5 H 0.026 0.974 6 C -0.617 4.617 7 H 0.083 0.917 8 C -0.224 4.224 9 N -0.576 5.576 10 Si 0.928 3.072 11 H -0.226 1.226 12 H -0.188 1.188 13 H -0.197 1.197 14 C 0.017 3.983 15 C -0.148 4.148 16 C -0.099 4.099 17 C -0.148 4.148 18 C 0.010 3.990 19 C -0.023 4.023 20 N -0.115 5.115 21 N -0.205 5.205 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.201 0.799 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.183 -4.305 -7.942 9.111 hybrid contribution -0.768 -0.221 -0.873 1.184 sum -1.951 -4.526 -8.815 10.099 Atomic orbital electron populations 1.21779 0.95920 1.00582 1.00908 1.20986 0.94347 0.96694 0.97227 1.21591 1.01266 0.95010 1.00139 1.18036 0.95201 0.86552 0.94728 0.97380 1.22028 0.90565 1.53923 0.95199 0.91706 1.27037 1.10195 0.92802 0.92366 1.70886 1.09885 1.46265 1.30525 0.83086 0.70512 0.77974 0.75657 1.22578 1.18835 1.19657 1.22373 0.87142 0.99567 0.89233 1.22451 1.00239 0.93557 0.98596 1.21998 0.94524 0.96722 0.96631 1.22182 0.95976 0.99952 0.96697 1.16661 0.91400 0.91681 0.99276 1.25335 0.92148 0.92319 0.92448 1.81153 1.11497 1.09275 1.09576 1.67427 1.14485 1.19862 1.18730 0.94526 0.91424 0.94284 0.91565 0.92716 0.91734 0.95100 0.93184 0.83557 0.79913 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.87 71.98 0.64 -4.01 16 2 C -0.07 -2.76 2.48 -10.79 -0.03 -2.79 16 3 C -0.12 -4.33 8.84 71.98 0.64 -3.70 16 4 C 0.07 3.40 1.31 -12.29 -0.02 3.39 16 5 H 0.01 0.44 7.00 -2.39 -0.02 0.42 16 6 C -0.58 -27.94 5.69 25.60 0.15 -27.80 16 7 H 0.06 2.97 7.76 -2.91 -0.02 2.95 16 8 C -0.02 -1.28 5.45 84.65 0.46 -0.82 16 9 N -0.94 -55.09 13.63 21.45 0.29 -54.80 16 10 Si 1.10 46.24 29.91 68.60 2.05 48.29 16 11 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 14 C 0.16 6.60 4.55 42.66 0.19 6.80 16 15 C -0.13 -4.50 9.18 22.44 0.21 -4.29 16 16 C -0.07 -1.93 10.17 22.44 0.23 -1.71 16 17 C -0.13 -3.36 9.80 22.62 0.22 -3.14 16 18 C 0.15 5.20 6.58 40.52 0.27 5.46 16 19 C 0.29 10.41 15.53 88.33 1.37 11.78 16 20 N -0.44 -16.16 18.54 19.00 0.35 -15.81 16 21 N -0.49 -20.91 9.48 -177.33 -1.68 -22.60 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.39 6.76 -2.39 -0.02 1.37 16 25 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.05 2.01 7.37 -2.39 -0.02 1.99 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.26 15.72 6.62 -92.71 -0.61 15.11 16 30 H 0.15 5.04 7.19 -2.91 -0.02 5.02 16 31 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -62.48 280.85 6.61 -55.87 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.27 Total: 9.87 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.33 Total: -20.83 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -1.04 Total: -93.20 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.05 Total: 48.29 kcal Total: -62.48 6.61 -55.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167066395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.505 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds