Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 C 1.53001 * 109.46922 * 119.99906 * 2 1 3 5 5 H 1.09000 * 109.46815 * 57.11158 * 4 2 1 6 6 C 1.50697 * 109.46948 * 177.11019 * 4 2 1 7 7 H 1.08001 * 120.00011 * 114.90572 * 6 4 2 8 8 C 1.37875 * 120.00213 * 294.90975 * 6 4 2 9 9 N 1.31513 * 119.99863 * 359.61730 * 8 6 4 10 10 Si 1.86807 * 120.00139 * 179.62389 * 8 6 4 11 11 H 1.48499 * 109.46740 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46973 * 119.99529 * 10 8 6 13 13 H 1.48498 * 109.46764 * 239.99593 * 10 8 6 14 14 C 1.50693 * 109.46967 * 297.11245 * 4 2 1 15 15 C 1.38697 * 120.74942 * 284.10140 * 14 4 2 16 16 C 1.38462 * 119.38349 * 179.97438 * 15 14 4 17 17 N 1.31587 * 120.91458 * 0.03102 * 16 15 14 18 18 C 1.32786 * 121.62086 * 359.97438 * 17 16 15 19 19 C 1.43195 * 119.73597 * 179.97438 * 18 17 16 20 20 N 6.73643 * 60.75890 * 95.53165 * 2 1 3 21 21 C 1.38492 * 120.74781 * 104.09124 * 14 4 2 22 22 H 1.08999 * 109.47334 * 297.13400 * 1 2 3 23 23 H 1.09004 * 109.46956 * 57.13055 * 1 2 3 24 24 H 1.08997 * 109.47299 * 177.13081 * 1 2 3 25 25 H 1.08994 * 109.46882 * 240.00060 * 2 1 3 26 26 H 1.09002 * 109.46713 * 172.70585 * 3 2 1 27 27 H 1.08991 * 109.47172 * 292.70481 * 3 2 1 28 28 H 1.08995 * 109.47117 * 52.70751 * 3 2 1 29 29 H 0.97006 * 120.00036 * 180.02562 * 9 8 6 30 30 H 1.08002 * 120.30588 * 0.26699 * 15 14 4 31 31 H 1.08010 * 119.54192 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.47069 * 0.03640 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6350 -1.7328 1.2755 6 6 3.5453 -0.7836 1.2140 7 1 4.1252 -0.2562 1.9570 8 6 4.1823 -1.5138 0.2331 9 7 3.4760 -2.1620 -0.6672 10 14 6.0484 -1.5825 0.1832 11 1 6.6034 -0.7737 1.2980 12 1 6.4957 -2.9916 0.3227 13 1 6.5292 -1.0363 -1.1113 14 6 1.5970 0.0293 2.4786 15 6 2.2258 1.2066 2.8557 16 6 1.7953 1.8735 3.9902 17 7 0.8004 1.4052 4.7130 18 6 0.1716 0.2820 4.3873 19 6 -0.9059 -0.1911 5.2032 20 7 -1.7606 -0.5666 5.8506 21 6 0.5525 -0.4408 3.2571 22 1 -0.3634 0.4687 0.9145 23 1 -0.3633 0.5578 -0.8632 24 1 -0.3634 -1.0263 -0.0514 25 1 1.8933 -0.5138 -0.8900 26 1 3.1222 1.4453 0.1305 27 1 1.7871 1.9173 -0.9479 28 1 1.5741 1.9926 0.8175 29 1 3.9242 -2.6761 -1.3571 30 1 3.0406 1.6020 2.2673 31 1 2.2829 2.7907 4.2860 32 1 0.0407 -1.3545 2.9931 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167075750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = 34.966809 kcal Electronic energy + Delta-G solvation = -15620.068540 eV Core-core repulsion = 13158.754043 eV Total energy + Delta-G solvation = -2461.314496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.40970 -38.21202 -37.38637 -34.09770 -33.00403 -32.50518 -29.15498 -27.92773 -25.92074 -24.80771 -23.63915 -20.94578 -19.30706 -18.22282 -17.10463 -17.02037 -16.42135 -15.83286 -15.60300 -15.17290 -14.64903 -14.44193 -14.25136 -13.94072 -13.88876 -13.64375 -13.06989 -12.87411 -12.81262 -12.72420 -12.49398 -11.85635 -11.71526 -11.57445 -11.23706 -10.90833 -10.48767 -10.39074 -10.10829 -9.93679 -8.05267 -6.14388 -0.29095 0.42217 1.43234 1.45709 1.51451 1.58634 1.85592 2.47355 2.54384 3.02364 3.27942 3.81111 4.07043 4.15725 4.30216 4.48702 4.55855 4.62299 4.66775 4.79632 4.97682 5.13610 5.20711 5.22561 5.33773 5.38927 5.64149 5.73745 5.75256 5.80617 5.98477 6.15376 6.25376 6.39072 6.86366 6.94108 7.52538 9.01302 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.007937 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.444151 B = 3526.773785 C = 3715.266317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.130 4.130 4 C 0.083 3.917 5 H 0.012 0.988 6 C -0.512 4.512 7 H 0.065 0.935 8 C 0.021 3.979 9 N -0.915 5.915 10 Si 0.941 3.059 11 H -0.262 1.262 12 H -0.292 1.292 13 H -0.285 1.285 14 C -0.004 4.004 15 C -0.129 4.129 16 C 0.106 3.894 17 N -0.479 5.479 18 C 0.166 3.834 19 C 0.294 3.706 20 N -0.435 5.435 21 C -0.126 4.126 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.154 0.846 31 H 0.200 0.800 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 7.463 2.813 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.187 4.187 4 C 0.064 3.936 5 H 0.030 0.970 6 C -0.550 4.550 7 H 0.084 0.916 8 C -0.178 4.178 9 N -0.554 5.554 10 Si 0.768 3.232 11 H -0.186 1.186 12 H -0.218 1.218 13 H -0.211 1.211 14 C -0.012 4.012 15 C -0.149 4.149 16 C -0.053 4.053 17 N -0.191 5.191 18 C 0.029 3.971 19 C -0.022 4.022 20 N -0.112 5.112 21 C -0.149 4.149 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.171 0.829 31 H 0.216 0.784 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.876 7.230 4.416 8.947 hybrid contribution 1.549 -0.963 -1.375 2.284 sum -1.327 6.267 3.041 7.091 Atomic orbital electron populations 1.21854 0.96613 1.00367 1.00836 1.20978 0.93291 0.96232 0.99827 1.21829 1.01278 0.95527 1.00059 1.17833 0.95019 0.92876 0.87850 0.96955 1.21412 0.91270 1.30100 1.12190 0.91647 1.25553 1.01372 0.95273 0.95612 1.70026 1.36319 1.32513 1.16568 0.85751 0.81965 0.77388 0.78050 1.18609 1.21825 1.21081 1.20792 0.90976 0.94046 0.95394 1.22631 1.00288 0.94788 0.97227 1.23221 0.91628 1.00011 0.90400 1.67484 1.08797 1.11047 1.31747 1.16201 0.93732 0.94224 0.92893 1.25197 0.92285 0.92507 0.92238 1.81187 1.11217 1.09505 1.09335 1.22000 0.97973 1.00890 0.94003 0.93174 0.92920 0.94267 0.91977 0.92780 0.94121 0.92462 0.93205 0.82875 0.78380 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.00 71.98 0.65 -4.07 16 2 C -0.08 -3.32 2.58 -10.79 -0.03 -3.35 16 3 C -0.13 -4.40 7.65 71.98 0.55 -3.85 16 4 C 0.08 3.48 1.77 -12.29 -0.02 3.45 16 5 H 0.01 0.59 8.02 -2.39 -0.02 0.57 16 6 C -0.51 -23.74 6.73 25.60 0.17 -23.57 16 7 H 0.07 2.93 6.81 -2.91 -0.02 2.91 16 8 C 0.02 1.04 5.31 84.65 0.45 1.49 16 9 N -0.91 -48.18 11.71 21.45 0.25 -47.93 16 10 Si 0.94 39.66 29.54 68.60 2.03 41.69 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.00 -0.15 3.65 -19.70 -0.07 -0.22 16 15 C -0.13 -3.78 6.67 22.43 0.15 -3.63 16 16 C 0.11 2.66 11.18 84.78 0.95 3.61 16 17 N -0.48 -14.06 10.28 -189.22 -1.94 -16.01 16 18 C 0.17 5.11 6.58 40.54 0.27 5.37 16 19 C 0.29 9.26 15.53 88.33 1.37 10.64 16 20 N -0.44 -14.61 18.54 19.00 0.35 -14.26 16 21 C -0.13 -4.02 8.80 22.62 0.20 -3.82 16 22 H 0.05 1.57 6.73 -2.39 -0.02 1.55 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 2.94 6.44 -2.39 -0.02 2.92 16 26 H 0.05 1.95 6.63 -2.39 -0.02 1.93 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.70 6.01 -2.39 -0.01 1.68 16 29 H 0.26 13.21 8.31 -92.70 -0.77 12.44 16 30 H 0.15 4.34 6.03 -2.91 -0.02 4.33 16 31 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.14 4.26 8.05 -2.91 -0.02 4.24 16 Total: -1.00 -53.80 272.34 6.45 -47.35 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.13 Total: 7.10 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.63 Total: -17.95 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.34 Total: -78.20 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -53.80 6.45 -47.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167075750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.318 kcal (2) G-P(sol) polarization free energy of solvation -53.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds