Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 C 1.52997 * 109.47430 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47520 * 181.59781 * 4 2 1 6 6 C 1.50705 * 109.46884 * 61.59855 * 4 2 1 7 7 H 1.08002 * 119.99516 * 245.27279 * 6 4 2 8 8 C 1.37872 * 120.00003 * 65.27709 * 6 4 2 9 9 N 1.31509 * 120.00325 * 5.41771 * 8 6 4 10 10 Si 1.86801 * 119.99856 * 185.42296 * 8 6 4 11 11 H 1.48504 * 109.47148 * 89.99645 * 10 8 6 12 12 H 1.48498 * 109.47197 * 209.99490 * 10 8 6 13 13 H 1.48498 * 109.47374 * 329.99920 * 10 8 6 14 14 C 1.50700 * 109.46756 * 301.60267 * 4 2 1 15 15 C 1.38696 * 120.75238 * 75.80805 * 14 4 2 16 16 C 1.38458 * 119.38452 * 179.74632 * 15 14 4 17 17 N 1.31589 * 120.91750 * 0.27597 * 16 15 14 18 18 C 1.32794 * 121.61440 * 359.97438 * 17 16 15 19 19 C 1.43202 * 119.73317 * 180.02562 * 18 17 16 20 20 N 6.73715 * 105.03389 * 63.30596 * 2 1 3 21 21 C 1.38495 * 120.74484 * 256.03118 * 14 4 2 22 22 H 1.09002 * 109.46843 * 305.69099 * 1 2 3 23 23 H 1.09000 * 109.47028 * 65.69087 * 1 2 3 24 24 H 1.08994 * 109.47036 * 185.68989 * 1 2 3 25 25 H 1.09003 * 109.46799 * 240.00156 * 2 1 3 26 26 H 1.09000 * 109.47091 * 184.86715 * 3 2 1 27 27 H 1.09000 * 109.47210 * 304.86634 * 3 2 1 28 28 H 1.08999 * 109.47233 * 64.86955 * 3 2 1 29 29 H 0.97000 * 120.00085 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.30653 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.54504 * 180.25403 * 16 15 14 32 32 H 1.08001 * 120.47274 * 0.02562 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1297 -0.6965 1.2636 6 6 1.5703 -2.1531 1.2294 7 1 0.8789 -2.5050 1.9808 8 6 2.0233 -3.0138 0.2522 9 7 2.9451 -2.6171 -0.5978 10 14 1.3276 -4.7435 0.1354 11 1 0.1453 -4.7419 -0.7632 12 1 2.3628 -5.6576 -0.4103 13 1 0.9215 -5.2060 1.4868 14 6 1.5055 -0.0342 2.4793 15 6 0.1861 -0.2061 2.8708 16 6 -0.2738 0.4345 4.0089 17 7 0.5215 1.2063 4.7184 18 6 1.7895 1.4016 4.3757 19 6 2.6194 2.2495 5.1776 20 7 3.2775 2.9229 5.8131 21 6 2.3196 0.7868 3.2418 22 1 -0.3633 0.5996 0.8347 23 1 -0.3633 0.4231 -0.9366 24 1 -0.3633 -1.0225 0.1019 25 1 1.8933 -0.5138 -0.8900 26 1 3.1265 1.4437 -0.0872 27 1 1.6073 1.9809 -0.8432 28 1 1.7497 1.9305 0.9304 29 1 3.2640 -3.2228 -1.2850 30 1 -0.4752 -0.8375 2.2958 31 1 -1.2996 0.2992 4.3184 32 1 3.3509 0.9463 2.9638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167075855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 47.306050 kcal Electronic energy + Delta-G solvation = -15619.245353 eV Core-core repulsion = 13158.465927 eV Total energy + Delta-G solvation = -2460.779427 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09719 -36.75444 -35.99366 -32.31093 -31.63073 -31.23044 -27.50681 -26.52222 -24.43056 -23.34453 -22.25498 -19.50854 -17.79498 -16.65613 -15.65891 -15.61231 -14.82982 -14.42189 -14.27107 -13.73824 -13.22434 -12.95421 -12.81766 -12.56282 -12.45709 -12.18147 -11.59585 -11.45649 -11.33755 -11.04426 -10.84631 -10.28676 -10.12536 -10.01255 -9.76493 -9.30314 -9.05556 -8.76422 -8.68794 -8.46539 -6.20273 -4.24581 1.00426 1.71176 2.74403 3.15918 3.20273 3.28802 3.30627 3.82899 4.25945 4.33827 4.98765 5.13724 5.39441 5.44205 5.60320 5.84246 5.98214 5.99788 6.03084 6.11694 6.34968 6.53204 6.58481 6.69243 6.74411 6.78031 7.00347 7.22440 7.23926 7.53509 7.57154 7.63881 7.80632 8.10561 8.14036 8.76093 9.39780 10.87916 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.007908 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.166624 B = 3540.033418 C = 3711.492821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.148 4.148 4 C 0.080 3.920 5 H 0.048 0.952 6 C -0.515 4.515 7 H 0.061 0.939 8 C 0.069 3.931 9 N -0.884 5.884 10 Si 0.889 3.111 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.013 3.987 15 C -0.131 4.131 16 C 0.090 3.910 17 N -0.472 5.472 18 C 0.166 3.834 19 C 0.283 3.717 20 N -0.418 5.418 21 C -0.126 4.126 22 H 0.039 0.961 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.263 0.737 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 3.562 1.733 6.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.206 4.206 4 C 0.061 3.939 5 H 0.066 0.934 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.134 4.134 9 N -0.521 5.521 10 Si 0.717 3.283 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.198 1.198 14 C 0.005 3.995 15 C -0.152 4.152 16 C -0.068 4.068 17 N -0.184 5.184 18 C 0.029 3.971 19 C -0.034 4.034 20 N -0.095 5.095 21 C -0.149 4.149 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.090 4.952 3.309 7.225 hybrid contribution -0.269 -1.667 -1.140 2.037 sum -4.360 3.285 2.169 5.874 Atomic orbital electron populations 1.21936 0.97214 1.01723 0.98737 1.21073 0.94321 0.92923 1.01760 1.21966 1.00485 0.98337 0.99787 1.18030 0.97022 0.93307 0.85500 0.93376 1.21027 1.27892 0.93484 1.12923 0.92041 1.24911 0.94486 0.98321 0.95722 1.69910 1.27719 1.36375 1.18102 0.86630 0.78920 0.84304 0.78468 1.20486 1.21236 1.19806 1.21070 0.92434 0.90037 0.95981 1.22534 0.97113 0.98998 0.96516 1.22652 0.98944 0.93282 0.91962 1.67402 1.02924 1.16492 1.31568 1.16280 0.90089 0.97573 0.93196 1.25215 0.92761 0.92791 0.92648 1.81170 1.10008 1.09652 1.08678 1.22034 1.01566 0.97235 0.94089 0.94191 0.95211 0.91520 0.88824 0.93456 0.94333 0.94140 0.92688 0.83415 0.82487 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.67 37.16 0.29 -2.17 16 2 C -0.08 -1.61 2.59 -90.62 -0.23 -1.84 16 3 C -0.15 -2.56 9.02 37.16 0.34 -2.22 16 4 C 0.08 1.67 1.75 -92.92 -0.16 1.51 16 5 H 0.05 1.12 8.00 -51.93 -0.42 0.71 16 6 C -0.52 -12.00 6.69 -34.44 -0.23 -12.23 16 7 H 0.06 1.41 6.81 -52.49 -0.36 1.05 16 8 C 0.07 1.68 5.25 -17.82 -0.09 1.58 16 9 N -0.88 -22.73 11.95 55.43 0.66 -22.06 16 10 Si 0.89 19.30 29.54 -169.99 -5.02 14.27 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.01 0.22 3.62 -104.36 -0.38 -0.15 16 15 C -0.13 -2.10 6.68 -39.33 -0.26 -2.37 16 16 C 0.09 1.31 11.18 -17.57 -0.20 1.11 16 17 N -0.47 -7.67 10.28 -11.16 -0.11 -7.79 16 18 C 0.17 2.72 6.58 -85.07 -0.56 2.16 16 19 C 0.28 4.68 15.53 -22.47 -0.35 4.33 16 20 N -0.42 -7.29 18.54 41.84 0.78 -6.52 16 21 C -0.13 -2.10 8.72 -39.04 -0.34 -2.44 16 22 H 0.04 0.64 5.85 -51.93 -0.30 0.34 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.25 6.79 -51.93 -0.35 0.89 16 25 H 0.09 2.14 6.68 -51.93 -0.35 1.80 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.15 2.30 6.09 -52.48 -0.32 1.98 16 31 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.14 2.10 8.05 -52.49 -0.42 1.68 16 LS Contribution 272.56 15.07 4.11 4.11 Total: -1.00 -25.37 272.56 -5.46 -30.84 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.69 Total: -0.12 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.19 Total: -12.73 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 1.32 Total: -36.37 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.37 -5.46 -30.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167075855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.142 kcal (2) G-P(sol) polarization free energy of solvation -25.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds