Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 C 1.52997 * 109.47430 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47520 * 181.59781 * 4 2 1 6 6 C 1.50705 * 109.46884 * 61.59855 * 4 2 1 7 7 H 1.08002 * 119.99516 * 245.27279 * 6 4 2 8 8 C 1.37872 * 120.00003 * 65.27709 * 6 4 2 9 9 N 1.31509 * 120.00325 * 5.41771 * 8 6 4 10 10 Si 1.86801 * 119.99856 * 185.42296 * 8 6 4 11 11 H 1.48504 * 109.47148 * 89.99645 * 10 8 6 12 12 H 1.48498 * 109.47197 * 209.99490 * 10 8 6 13 13 H 1.48498 * 109.47374 * 329.99920 * 10 8 6 14 14 C 1.50700 * 109.46756 * 301.60267 * 4 2 1 15 15 C 1.38696 * 120.75238 * 75.80805 * 14 4 2 16 16 C 1.38458 * 119.38452 * 179.74632 * 15 14 4 17 17 N 1.31589 * 120.91750 * 0.27597 * 16 15 14 18 18 C 1.32794 * 121.61440 * 359.97438 * 17 16 15 19 19 C 1.43202 * 119.73317 * 180.02562 * 18 17 16 20 20 N 6.73715 * 105.03389 * 63.30596 * 2 1 3 21 21 C 1.38495 * 120.74484 * 256.03118 * 14 4 2 22 22 H 1.09002 * 109.46843 * 305.69099 * 1 2 3 23 23 H 1.09000 * 109.47028 * 65.69087 * 1 2 3 24 24 H 1.08994 * 109.47036 * 185.68989 * 1 2 3 25 25 H 1.09003 * 109.46799 * 240.00156 * 2 1 3 26 26 H 1.09000 * 109.47091 * 184.86715 * 3 2 1 27 27 H 1.09000 * 109.47210 * 304.86634 * 3 2 1 28 28 H 1.08999 * 109.47233 * 64.86955 * 3 2 1 29 29 H 0.97000 * 120.00085 * 179.97438 * 9 8 6 30 30 H 1.08008 * 120.30653 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.54504 * 180.25403 * 16 15 14 32 32 H 1.08001 * 120.47274 * 0.02562 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1297 -0.6965 1.2636 6 6 1.5703 -2.1531 1.2294 7 1 0.8789 -2.5050 1.9808 8 6 2.0233 -3.0138 0.2522 9 7 2.9451 -2.6171 -0.5978 10 14 1.3276 -4.7435 0.1354 11 1 0.1453 -4.7419 -0.7632 12 1 2.3628 -5.6576 -0.4103 13 1 0.9215 -5.2060 1.4868 14 6 1.5055 -0.0342 2.4793 15 6 0.1861 -0.2061 2.8708 16 6 -0.2738 0.4345 4.0089 17 7 0.5215 1.2063 4.7184 18 6 1.7895 1.4016 4.3757 19 6 2.6194 2.2495 5.1776 20 7 3.2775 2.9229 5.8131 21 6 2.3196 0.7868 3.2418 22 1 -0.3633 0.5996 0.8347 23 1 -0.3633 0.4231 -0.9366 24 1 -0.3633 -1.0225 0.1019 25 1 1.8933 -0.5138 -0.8900 26 1 3.1265 1.4437 -0.0872 27 1 1.6073 1.9809 -0.8432 28 1 1.7497 1.9305 0.9304 29 1 3.2640 -3.2228 -1.2850 30 1 -0.4752 -0.8375 2.2958 31 1 -1.2996 0.2992 4.3184 32 1 3.3509 0.9463 2.9638 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167075855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 34.813942 kcal Electronic energy + Delta-G solvation = -15619.787052 eV Core-core repulsion = 13158.465927 eV Total energy + Delta-G solvation = -2461.321125 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41269 -38.21614 -37.38877 -34.10557 -33.00594 -32.50692 -29.15635 -27.93441 -25.91488 -24.81342 -23.64401 -20.96167 -19.31019 -18.21425 -17.10264 -17.02997 -16.41592 -15.83851 -15.60620 -15.17415 -14.66154 -14.43559 -14.25742 -13.94869 -13.89345 -13.64376 -13.08957 -12.86947 -12.77583 -12.71822 -12.52679 -11.85626 -11.74322 -11.57095 -11.25139 -10.93639 -10.44677 -10.39433 -10.12360 -9.93845 -8.06471 -6.13907 -0.29237 0.42111 1.43274 1.47023 1.51284 1.57201 1.85542 2.47456 2.54370 3.02308 3.27394 3.81079 4.06776 4.15583 4.29948 4.48273 4.54499 4.62157 4.65316 4.79621 4.97303 5.13254 5.20205 5.21715 5.33284 5.39351 5.62775 5.73369 5.75183 5.80496 5.98089 6.11462 6.25288 6.37873 6.86295 6.94165 7.52461 9.01184 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.007908 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.166624 B = 3540.033418 C = 3711.492821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.083 3.917 5 H 0.013 0.987 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.022 3.978 9 N -0.915 5.915 10 Si 0.940 3.060 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.268 1.268 14 C -0.004 4.004 15 C -0.130 4.130 16 C 0.107 3.893 17 N -0.479 5.479 18 C 0.166 3.834 19 C 0.294 3.706 20 N -0.435 5.435 21 C -0.126 4.126 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.259 0.741 30 H 0.154 0.846 31 H 0.200 0.800 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 3.980 2.681 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.031 0.969 6 C -0.551 4.551 7 H 0.084 0.916 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.767 3.233 11 H -0.200 1.200 12 H -0.222 1.222 13 H -0.192 1.192 14 C -0.012 4.012 15 C -0.150 4.150 16 C -0.052 4.052 17 N -0.191 5.191 18 C 0.030 3.970 19 C -0.022 4.022 20 N -0.112 5.112 21 C -0.149 4.149 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.172 0.828 31 H 0.216 0.784 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.968 5.376 4.270 9.097 hybrid contribution 0.300 -1.786 -1.399 2.289 sum -5.668 3.590 2.871 7.297 Atomic orbital electron populations 1.21839 0.95376 1.01375 1.00211 1.20948 0.95866 0.93821 0.99466 1.21860 1.00033 0.96891 1.00954 1.17825 0.94993 0.92974 0.87801 0.96883 1.21373 1.26923 0.94702 1.12123 0.91647 1.25546 0.94969 1.01272 0.95914 1.70038 1.29276 1.37209 1.18938 0.85818 0.78083 0.80878 0.78483 1.20021 1.22161 1.19216 1.20789 0.93736 0.91198 0.95464 1.22630 0.96189 0.99044 0.97119 1.23224 1.00224 0.91287 0.90496 1.67492 1.02802 1.16886 1.31898 1.16204 0.90336 0.97564 0.92937 1.25197 0.92372 0.92413 0.92252 1.81184 1.10480 1.10271 1.09304 1.22001 1.01713 0.97071 0.94083 0.92253 0.94030 0.92847 0.92567 0.94235 0.92802 0.93086 0.93198 0.82812 0.78355 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.67 71.98 0.55 -3.86 16 2 C -0.08 -3.21 2.59 -10.80 -0.03 -3.24 16 3 C -0.14 -4.71 9.02 71.98 0.65 -4.06 16 4 C 0.08 3.47 1.75 -12.29 -0.02 3.45 16 5 H 0.01 0.63 8.00 -2.39 -0.02 0.61 16 6 C -0.51 -23.83 6.69 25.60 0.17 -23.66 16 7 H 0.07 2.92 6.81 -2.91 -0.02 2.90 16 8 C 0.02 1.11 5.25 84.65 0.44 1.55 16 9 N -0.92 -48.44 11.95 21.44 0.26 -48.18 16 10 Si 0.94 39.63 29.54 68.60 2.03 41.65 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 14 C 0.00 -0.14 3.62 -19.69 -0.07 -0.21 16 15 C -0.13 -3.78 6.68 22.43 0.15 -3.63 16 16 C 0.11 2.66 11.18 84.78 0.95 3.61 16 17 N -0.48 -14.05 10.28 -189.22 -1.94 -15.99 16 18 C 0.17 5.11 6.58 40.54 0.27 5.38 16 19 C 0.29 9.27 15.53 88.33 1.37 10.64 16 20 N -0.44 -14.62 18.54 19.00 0.35 -14.27 16 21 C -0.13 -4.02 8.72 22.62 0.20 -3.83 16 22 H 0.06 1.75 5.85 -2.39 -0.01 1.73 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.92 6.79 -2.39 -0.02 1.91 16 25 H 0.06 2.64 6.68 -2.39 -0.02 2.62 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.59 6.57 -2.39 -0.02 1.57 16 29 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.15 4.33 6.09 -2.91 -0.02 4.31 16 31 H 0.20 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.14 4.27 8.05 -2.91 -0.02 4.25 16 Total: -1.00 -54.03 272.56 6.45 -47.59 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.13 Total: 7.07 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.63 Total: -17.87 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.34 Total: -78.44 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Total: -54.03 6.45 -47.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167075855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.401 kcal (2) G-P(sol) polarization free energy of solvation -54.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds