Wall clock time and date at job start Mon Mar 30 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 O 1.42967 * 109.46772 * 240.00054 * 2 1 3 5 5 C 1.43123 * 113.87900 * 181.27885 * 4 2 1 6 6 C 1.53257 * 108.92795 * 57.77123 * 5 4 2 7 7 H 1.08992 * 109.57776 * 65.54396 * 6 5 4 8 8 C 1.50703 * 109.57548 * 185.80659 * 6 5 4 9 9 H 1.07992 * 120.00001 * 94.94854 * 8 6 5 10 10 C 1.37881 * 119.99491 * 274.95003 * 8 6 5 11 11 N 1.31509 * 120.00103 * 355.17838 * 10 8 6 12 12 Si 1.86801 * 119.99736 * 175.17533 * 10 8 6 13 13 H 1.48500 * 109.47061 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46950 * 240.00104 * 12 10 8 15 15 H 1.48497 * 109.47076 * 120.00321 * 12 10 8 16 16 C 1.53264 * 108.94492 * 305.67344 * 6 5 4 17 17 H 1.09001 * 109.56324 * 294.61873 * 16 6 5 18 18 C 1.53005 * 109.55329 * 174.30060 * 16 6 5 19 19 C 1.53001 * 109.46913 * 175.00012 * 18 16 6 20 20 O 1.42900 * 109.47476 * 179.97438 * 19 18 16 21 21 O 1.42962 * 109.47080 * 120.00421 * 2 1 3 22 22 H 1.08999 * 109.47266 * 300.00177 * 1 2 3 23 23 H 1.09003 * 109.47209 * 59.99805 * 1 2 3 24 24 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46983 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47292 * 299.99637 * 3 2 1 27 27 H 1.08994 * 109.47271 * 60.00278 * 3 2 1 28 28 H 1.09006 * 109.45297 * 297.99820 * 5 4 2 29 29 H 1.09001 * 109.67642 * 177.67207 * 5 4 2 30 30 H 0.96998 * 120.00092 * 5.19511 * 11 10 8 31 31 H 1.08998 * 109.47102 * 294.99723 * 18 16 6 32 32 H 1.09000 * 109.47272 * 55.00453 * 18 16 6 33 33 H 1.08998 * 109.47297 * 300.00232 * 19 18 16 34 34 H 1.09006 * 109.47434 * 59.99964 * 19 18 16 35 35 H 0.96692 * 114.00338 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 -1.1674 5 6 3.4332 -0.7543 -1.2482 6 6 3.9624 -1.4693 -0.0001 7 1 3.6195 -2.5039 0.0011 8 6 5.4690 -1.4365 -0.0001 9 1 5.9922 -0.6601 0.5383 10 6 6.1794 -2.3977 -0.6875 11 7 5.5469 -3.3964 -1.2636 12 14 8.0404 -2.2812 -0.8004 13 1 8.5057 -1.0727 -0.0737 14 1 8.4448 -2.1873 -2.2262 15 1 8.6499 -3.4908 -0.1917 16 6 3.4331 -0.7515 1.2464 17 1 3.8512 0.2540 1.2937 18 6 3.8349 -1.5350 2.4977 19 6 3.4149 -0.7545 3.7448 20 8 3.7895 -1.4864 4.9136 21 8 2.0066 -0.6740 1.1672 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.8512 0.2511 -1.2977 29 1 3.7194 -1.3144 -2.1384 30 1 4.5771 -3.4172 -1.2700 31 1 3.3398 -2.5060 2.4930 32 1 4.9154 -1.6781 2.5055 33 1 3.9099 0.2166 3.7496 34 1 2.3343 -0.6113 3.7371 35 1 3.5532 -1.0501 5.7435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212557524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:52 Heat of formation + Delta-G solvation = -164.102274 kcal Electronic energy + Delta-G solvation = -17521.093519 eV Core-core repulsion = 14711.545068 eV Total energy + Delta-G solvation = -2809.548450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72794 -36.75773 -35.06264 -34.54973 -32.13138 -30.62088 -29.07008 -27.20773 -24.74174 -24.14479 -21.65637 -20.82920 -19.13646 -17.32623 -16.98882 -16.80704 -15.36605 -15.01946 -14.49984 -14.33592 -13.84791 -13.65417 -13.18076 -12.84446 -12.47005 -12.21565 -11.93637 -11.86085 -11.55820 -11.49434 -11.26252 -10.94054 -10.85574 -10.64181 -10.22647 -10.11229 -10.05840 -9.60291 -9.09181 -8.71421 -8.60544 -8.36641 -6.45861 -4.19670 3.39391 3.42031 3.55378 4.15383 4.35300 4.48162 4.56668 5.13149 5.24802 5.26100 5.48933 5.61078 5.71127 5.81995 5.85431 5.88081 5.91576 6.03273 6.11616 6.13783 6.23299 6.32822 6.49035 6.64367 6.74620 6.93319 7.07778 7.24570 7.55617 7.88502 7.97932 8.15450 8.31141 8.75757 9.53448 10.92646 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.010962 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.827608 B = 2553.650463 C = 3560.848895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.271 3.729 3 C -0.204 4.204 4 O -0.405 6.405 5 C 0.061 3.939 6 C -0.020 4.020 7 H 0.049 0.951 8 C -0.597 4.597 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.905 5.905 12 Si 1.072 2.928 13 H -0.288 1.288 14 H -0.287 1.287 15 H -0.285 1.285 16 C 0.103 3.897 17 H 0.049 0.951 18 C -0.097 4.097 19 C 0.078 3.922 20 O -0.576 6.576 21 O -0.400 6.400 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.273 0.727 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 8.443 5.412 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.193 3.807 3 C -0.262 4.262 4 O -0.326 6.326 5 C -0.015 4.015 6 C -0.040 4.040 7 H 0.067 0.933 8 C -0.635 4.635 9 H 0.072 0.928 10 C -0.181 4.181 11 N -0.540 5.540 12 Si 0.900 3.100 13 H -0.214 1.214 14 H -0.213 1.213 15 H -0.212 1.212 16 C 0.046 3.954 17 H 0.067 0.933 18 C -0.134 4.134 19 C 0.000 4.000 20 O -0.380 6.380 21 O -0.322 6.322 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.004 7.082 4.390 9.719 hybrid contribution -1.148 1.511 0.864 2.085 sum -6.152 8.593 5.254 11.802 Atomic orbital electron populations 1.21559 0.91060 1.03397 1.02185 1.22400 0.93438 0.87640 0.77184 1.22824 1.03200 0.97618 1.02552 1.87993 1.24317 1.78123 1.42173 1.23246 0.77149 0.99471 1.01629 1.19968 0.97411 0.96667 0.89922 0.93303 1.21750 0.89626 1.16095 1.36068 0.92849 1.25851 1.06974 0.91995 0.93264 1.70727 1.11344 1.29556 1.42363 0.83501 0.74189 0.75795 0.76512 1.21428 1.21287 1.21158 1.22216 0.78554 0.98018 0.96593 0.93289 1.21404 1.03344 0.98817 0.89862 1.22282 0.98197 0.93989 0.85497 1.86520 1.84790 1.50625 1.16066 1.87979 1.23249 1.78393 1.42563 0.91083 0.90965 0.91286 0.91260 0.91337 0.91493 0.94131 0.89523 0.91514 0.91376 0.88606 0.94439 0.93572 0.78410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.21 37.16 0.34 -1.50 16 2 C 0.27 5.03 1.50 -26.73 -0.04 4.99 16 3 C -0.20 -3.26 8.11 37.16 0.30 -2.96 16 4 O -0.40 -8.81 10.35 -59.03 -0.61 -9.42 16 5 C 0.06 1.41 5.88 37.29 0.22 1.63 16 6 C -0.02 -0.51 1.70 -91.50 -0.16 -0.66 16 7 H 0.05 1.37 6.68 -51.93 -0.35 1.02 16 8 C -0.60 -15.91 7.29 -34.44 -0.25 -16.16 16 9 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 10 C 0.02 0.69 5.45 -17.82 -0.10 0.59 16 11 N -0.90 -26.68 13.63 55.43 0.76 -25.92 16 12 Si 1.07 24.60 29.91 -169.99 -5.08 19.51 16 13 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.10 2.21 1.83 -26.59 -0.05 2.16 16 17 H 0.05 1.03 6.53 -51.93 -0.34 0.69 16 18 C -0.10 -2.01 5.20 -26.73 -0.14 -2.15 16 19 C 0.08 1.31 6.95 37.16 0.26 1.57 16 20 O -0.58 -9.27 13.66 -35.23 -0.48 -9.76 16 21 O -0.40 -8.19 9.56 -59.03 -0.56 -8.76 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.21 5.12 -51.93 -0.27 0.94 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.90 6.54 -51.93 -0.34 0.56 16 29 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 30 H 0.27 8.13 6.66 -40.82 -0.27 7.86 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.10 2.15 7.28 -51.93 -0.38 1.77 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.74 7.84 -51.93 -0.41 0.34 16 35 H 0.37 3.84 9.12 45.56 0.42 4.25 16 LS Contribution 280.26 15.07 4.22 4.22 Total: -1.00 -30.71 280.26 -5.89 -36.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.52 Total: 6.00 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 0.39 Total: -12.48 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.76 Total: -25.92 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.66 Total: -27.94 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.71 -5.89 -36.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212557524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.504 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds