Wall clock time and date at job start Mon Mar 30 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 O 1.42967 * 109.46772 * 240.00054 * 2 1 3 5 5 C 1.43123 * 113.87900 * 181.27885 * 4 2 1 6 6 C 1.53257 * 108.92795 * 57.77123 * 5 4 2 7 7 H 1.08992 * 109.57776 * 65.54396 * 6 5 4 8 8 C 1.50703 * 109.57548 * 185.80659 * 6 5 4 9 9 H 1.07992 * 120.00001 * 94.94854 * 8 6 5 10 10 C 1.37881 * 119.99491 * 274.95003 * 8 6 5 11 11 N 1.31509 * 120.00103 * 355.17838 * 10 8 6 12 12 Si 1.86801 * 119.99736 * 175.17533 * 10 8 6 13 13 H 1.48500 * 109.47061 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46950 * 240.00104 * 12 10 8 15 15 H 1.48497 * 109.47076 * 120.00321 * 12 10 8 16 16 C 1.53264 * 108.94492 * 305.67344 * 6 5 4 17 17 H 1.09001 * 109.56324 * 294.61873 * 16 6 5 18 18 C 1.53005 * 109.55329 * 174.30060 * 16 6 5 19 19 C 1.53001 * 109.46913 * 175.00012 * 18 16 6 20 20 O 1.42900 * 109.47476 * 179.97438 * 19 18 16 21 21 O 1.42962 * 109.47080 * 120.00421 * 2 1 3 22 22 H 1.08999 * 109.47266 * 300.00177 * 1 2 3 23 23 H 1.09003 * 109.47209 * 59.99805 * 1 2 3 24 24 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46983 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47292 * 299.99637 * 3 2 1 27 27 H 1.08994 * 109.47271 * 60.00278 * 3 2 1 28 28 H 1.09006 * 109.45297 * 297.99820 * 5 4 2 29 29 H 1.09001 * 109.67642 * 177.67207 * 5 4 2 30 30 H 0.96998 * 120.00092 * 5.19511 * 11 10 8 31 31 H 1.08998 * 109.47102 * 294.99723 * 18 16 6 32 32 H 1.09000 * 109.47272 * 55.00453 * 18 16 6 33 33 H 1.08998 * 109.47297 * 300.00232 * 19 18 16 34 34 H 1.09006 * 109.47434 * 59.99964 * 19 18 16 35 35 H 0.96692 * 114.00338 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 -1.1674 5 6 3.4332 -0.7543 -1.2482 6 6 3.9624 -1.4693 -0.0001 7 1 3.6195 -2.5039 0.0011 8 6 5.4690 -1.4365 -0.0001 9 1 5.9922 -0.6601 0.5383 10 6 6.1794 -2.3977 -0.6875 11 7 5.5469 -3.3964 -1.2636 12 14 8.0404 -2.2812 -0.8004 13 1 8.5057 -1.0727 -0.0737 14 1 8.4448 -2.1873 -2.2262 15 1 8.6499 -3.4908 -0.1917 16 6 3.4331 -0.7515 1.2464 17 1 3.8512 0.2540 1.2937 18 6 3.8349 -1.5350 2.4977 19 6 3.4149 -0.7545 3.7448 20 8 3.7895 -1.4864 4.9136 21 8 2.0066 -0.6740 1.1672 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.8512 0.2511 -1.2977 29 1 3.7194 -1.3144 -2.1384 30 1 4.5771 -3.4172 -1.2700 31 1 3.3398 -2.5060 2.4930 32 1 4.9154 -1.6781 2.5055 33 1 3.9099 0.2166 3.7496 34 1 2.3343 -0.6113 3.7371 35 1 3.5532 -1.0501 5.7435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212557524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:52 Heat of formation + Delta-G solvation = -186.916139 kcal Electronic energy + Delta-G solvation = -17522.082802 eV Core-core repulsion = 14711.545068 eV Total energy + Delta-G solvation = -2810.537734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37970 -38.11797 -36.68370 -36.41035 -33.91960 -32.08415 -30.85722 -28.49179 -26.51530 -26.02491 -23.34722 -22.39625 -20.85466 -19.13689 -18.59969 -18.31564 -16.90090 -16.68962 -16.04939 -15.90361 -15.71416 -15.31169 -14.69061 -14.59616 -13.95206 -13.65041 -13.42222 -13.22342 -13.08241 -13.03985 -12.88683 -12.69689 -12.47388 -12.16162 -11.95779 -11.87845 -11.78156 -10.97744 -10.84575 -10.69014 -10.44959 -10.33226 -8.66745 -6.39806 1.52627 1.60548 1.76471 2.52259 2.59409 2.84504 3.13911 3.28313 3.79394 3.88758 3.97995 4.11662 4.21956 4.25361 4.39261 4.51337 4.56386 4.61791 4.69944 4.71719 4.74156 4.81038 4.98213 5.02032 5.14107 5.23545 5.28521 5.40478 5.67760 6.12839 6.18495 6.34741 6.56096 6.92416 7.41401 8.71517 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.010962 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.827608 B = 2553.650463 C = 3560.848895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.248 3.752 3 C -0.197 4.197 4 O -0.419 6.419 5 C 0.074 3.926 6 C -0.025 4.025 7 H 0.005 0.995 8 C -0.596 4.596 9 H 0.056 0.944 10 C -0.027 4.027 11 N -0.934 5.934 12 Si 1.117 2.883 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.284 1.284 16 C 0.114 3.886 17 H 0.062 0.938 18 C -0.097 4.097 19 C 0.091 3.909 20 O -0.594 6.594 21 O -0.405 6.405 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.257 0.743 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 10.769 6.553 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.172 3.828 3 C -0.255 4.255 4 O -0.341 6.341 5 C -0.002 4.002 6 C -0.044 4.044 7 H 0.023 0.977 8 C -0.633 4.633 9 H 0.075 0.925 10 C -0.226 4.226 11 N -0.571 5.571 12 Si 0.939 3.061 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.210 1.210 16 C 0.057 3.943 17 H 0.079 0.921 18 C -0.135 4.135 19 C 0.013 3.987 20 O -0.402 6.402 21 O -0.327 6.327 22 H 0.118 0.882 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.380 9.436 5.563 12.204 hybrid contribution -1.150 0.799 0.557 1.507 sum -6.530 10.236 6.120 13.597 Atomic orbital electron populations 1.21651 0.87934 1.03511 1.04669 1.23204 0.95702 0.88611 0.75289 1.22775 1.01950 0.95819 1.04915 1.87974 1.22905 1.79122 1.44050 1.22850 0.78507 0.99289 0.99580 1.19955 0.96834 0.94937 0.92694 0.97717 1.22012 0.90734 1.15611 1.34981 0.92536 1.27266 1.11004 0.91588 0.92722 1.70855 1.10363 1.31200 1.44708 0.82941 0.69413 0.76677 0.77109 1.19021 1.20558 1.20960 1.21960 0.79373 0.97940 0.95048 0.92059 1.21314 1.01570 0.98362 0.92210 1.22040 0.98902 0.93689 0.84032 1.86451 1.85037 1.51505 1.17227 1.87974 1.22181 1.79050 1.43450 0.88226 0.88818 0.92432 0.93086 0.89452 0.88705 0.92860 0.92193 0.93282 0.93897 0.90914 0.92370 0.92419 0.75268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.21 71.98 0.66 -2.54 16 2 C 0.25 8.75 1.50 30.60 0.05 8.79 16 3 C -0.20 -5.65 8.11 71.98 0.58 -5.07 16 4 O -0.42 -18.21 10.35 -126.22 -1.31 -19.52 16 5 C 0.07 3.51 5.88 72.07 0.42 3.94 16 6 C -0.02 -1.27 1.70 -11.36 -0.02 -1.29 16 7 H 0.00 0.28 6.68 -2.39 -0.02 0.26 16 8 C -0.60 -32.26 7.29 25.60 0.19 -32.07 16 9 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 10 C -0.03 -1.51 5.45 84.66 0.46 -1.05 16 11 N -0.93 -57.27 13.63 21.45 0.29 -56.98 16 12 Si 1.12 49.52 29.91 68.60 2.05 51.57 16 13 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 C 0.11 4.86 1.83 30.68 0.06 4.92 16 17 H 0.06 2.48 6.53 -2.39 -0.02 2.47 16 18 C -0.10 -4.04 5.20 30.60 0.16 -3.88 16 19 C 0.09 2.86 6.95 71.98 0.50 3.37 16 20 O -0.59 -17.87 13.66 -148.98 -2.04 -19.91 16 21 O -0.40 -16.12 9.56 -126.22 -1.21 -17.33 16 22 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.65 5.12 -2.38 -0.01 1.63 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.36 6.54 -2.38 -0.02 2.35 16 29 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.26 16.22 6.66 -92.71 -0.62 15.60 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 3.32 7.28 -2.39 -0.02 3.30 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.70 7.84 -2.38 -0.02 1.68 16 35 H 0.40 7.03 9.12 -74.06 -0.68 6.36 16 Total: -1.00 -68.21 280.26 1.41 -66.79 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.55 Total: 20.25 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.06 Total: -24.89 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.29 Total: -56.98 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -4.55 Total: -56.75 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -68.21 1.41 -66.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212557524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.122 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds