Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47250 * 125.83986 * 2 1 4 4 C 1.54155 * 103.31605 * 180.26066 * 3 2 1 5 5 N 1.46933 * 104.09847 * 359.76582 * 4 3 2 6 6 C 1.29404 * 110.11986 * 359.97438 * 5 4 3 7 7 C 1.47669 * 122.92701 * 180.02562 * 6 5 4 8 8 C 1.39139 * 120.27117 * 303.77903 * 7 6 5 9 9 C 1.38178 * 120.10075 * 179.97438 * 8 7 6 10 10 C 1.38868 * 120.66989 * 359.97438 * 9 8 7 11 11 C 1.37515 * 120.55846 * 359.74241 * 10 9 8 12 12 C 1.40743 * 119.86863 * 0.51064 * 11 10 9 13 13 C 1.40899 * 120.32196 * 179.76454 * 12 11 10 14 14 H 1.08000 * 119.99549 * 154.90513 * 13 12 11 15 15 C 1.40189 * 120.00479 * 334.90933 * 13 12 11 16 16 N 1.30691 * 119.99675 * 342.21676 * 15 13 12 17 17 Si 1.86797 * 120.00145 * 162.21657 * 15 13 12 18 18 H 1.48508 * 109.46736 * 89.99946 * 17 15 13 19 19 H 1.48494 * 109.47138 * 209.99629 * 17 15 13 20 20 H 1.48492 * 109.47221 * 330.00186 * 17 15 13 21 21 H 1.09004 * 109.46495 * 274.81486 * 1 2 3 22 22 H 1.08999 * 109.47170 * 34.80610 * 1 2 3 23 23 H 1.08996 * 109.47140 * 154.81268 * 1 2 3 24 24 H 1.09000 * 110.85122 * 61.71040 * 3 2 1 25 25 H 1.09000 * 110.44853 * 298.61862 * 3 2 1 26 26 H 1.08997 * 110.50330 * 241.11702 * 4 3 2 27 27 H 1.08994 * 110.50643 * 118.41973 * 4 3 2 28 28 H 1.08001 * 119.95395 * 359.97438 * 8 7 6 29 29 H 1.07998 * 119.66801 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.72142 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.07035 * 180.28486 * 11 10 9 32 32 H 0.97003 * 119.99403 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3272 1.1937 0.0000 4 6 3.7511 0.6032 -0.0068 5 7 3.5359 -0.8503 -0.0041 6 6 2.2687 -1.1126 0.0034 7 6 1.7339 -2.4890 0.0085 8 6 2.0971 -3.3863 -0.9911 9 6 1.5950 -4.6736 -0.9826 10 6 0.7261 -5.0885 0.0180 11 6 0.3536 -4.2261 1.0223 12 6 0.8469 -2.9080 1.0333 13 6 0.4676 -2.0150 2.0550 14 1 1.1094 -1.1855 2.3129 15 6 -0.7427 -2.2032 2.7369 16 7 -1.6710 -2.9655 2.2221 17 14 -1.0286 -1.3642 4.3812 18 1 -1.6486 -0.0335 4.1567 19 1 -1.9340 -2.1983 5.2117 20 1 0.2693 -1.1937 5.0822 21 1 -0.3632 0.0863 1.0241 22 1 -0.3633 0.8438 -0.5866 23 1 -0.3633 -0.9299 -0.4373 24 1 2.1630 1.7909 0.8970 25 1 2.1536 1.7888 -0.8965 26 1 4.2960 0.9101 0.8859 27 1 4.2866 0.9081 -0.9058 28 1 2.7724 -3.0761 -1.7748 29 1 1.8812 -5.3641 -1.7621 30 1 0.3425 -6.0981 0.0095 31 1 -0.3190 -4.5585 1.7992 32 1 -2.5087 -3.0954 2.6938 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214981399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = 36.922445 kcal Electronic energy + Delta-G solvation = -15998.661406 eV Core-core repulsion = 13537.431712 eV Total energy + Delta-G solvation = -2461.229694 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87672 -38.91454 -35.66084 -33.77214 -32.64102 -31.39765 -29.49228 -27.52026 -26.76940 -23.40122 -23.09116 -22.47346 -19.91984 -19.04521 -17.55786 -17.03248 -16.70718 -16.05821 -15.57713 -15.23426 -15.01115 -14.40908 -14.27907 -13.81953 -13.46359 -13.16634 -12.95522 -12.92190 -12.78849 -12.72074 -12.54310 -12.17850 -11.81766 -11.38480 -11.26548 -11.02784 -10.57143 -9.33350 -9.30121 -8.69860 -8.52937 -6.32927 0.75841 1.05631 1.37609 1.46413 1.52794 1.93351 2.17545 2.45829 2.73494 3.62642 3.86610 3.97350 4.21697 4.30178 4.47424 4.52287 4.62720 4.72327 4.79250 4.85889 5.04563 5.11194 5.14111 5.28644 5.31324 5.42874 5.63439 5.81689 5.95956 6.07549 6.17506 6.33238 6.61561 6.79177 6.89248 6.99970 7.36004 8.27008 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.013585 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.135137 B = 2060.546748 C = 3133.524091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.643 5.643 3 C 0.080 3.920 4 C 0.023 3.977 5 N -0.640 5.640 6 C 0.451 3.549 7 C -0.199 4.199 8 C -0.057 4.057 9 C -0.244 4.244 10 C -0.096 4.096 11 C -0.187 4.187 12 C 0.114 3.886 13 C -0.460 4.460 14 H 0.063 0.937 15 C 0.052 3.948 16 N -0.802 5.802 17 Si 0.962 3.038 18 H -0.258 1.258 19 H -0.263 1.263 20 H -0.271 1.271 21 H 0.044 0.956 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 5.600 -1.283 5.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.365 5.365 3 C -0.044 4.044 4 C -0.107 4.107 5 N -0.371 5.371 6 C 0.179 3.821 7 C -0.202 4.202 8 C -0.077 4.077 9 C -0.263 4.263 10 C -0.115 4.115 11 C -0.206 4.206 12 C 0.110 3.890 13 C -0.489 4.489 14 H 0.081 0.919 15 C -0.166 4.166 16 N -0.426 5.426 17 Si 0.784 3.216 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.195 1.195 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.250 5.257 -1.264 5.412 hybrid contribution -0.805 0.776 0.763 1.353 sum -0.555 6.032 -0.501 6.078 Atomic orbital electron populations 1.21234 0.77172 1.01348 1.01017 1.48297 1.06165 1.04307 1.77727 1.22650 0.90933 0.88255 1.02523 1.23073 0.95781 0.89398 1.02399 1.74625 1.13717 1.13770 1.35013 1.21262 0.86806 0.88379 0.85693 1.18197 1.10427 0.90724 1.00898 1.20736 0.97016 0.93501 0.96400 1.20625 1.06147 0.96501 1.03017 1.21063 0.96949 0.98747 0.94694 1.21288 1.05007 0.93534 1.00757 1.17711 0.88676 0.92447 0.90143 1.19432 1.03713 1.10431 1.15283 0.91895 1.26509 0.94563 0.94716 1.00845 1.69773 1.05033 1.30279 1.37537 0.85489 0.78854 0.79364 0.77885 1.18229 1.18752 1.19504 0.93720 0.90532 0.93279 0.90698 0.89454 0.90336 0.89437 0.88012 0.86147 0.86581 0.87305 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 5.14 9.37 127.77 1.20 6.34 16 2 N -0.64 -25.85 3.13 -719.38 -2.25 -28.10 16 3 C 0.08 2.54 7.75 86.63 0.67 3.21 16 4 C 0.02 0.80 8.04 86.69 0.70 1.50 16 5 N -0.64 -29.05 11.63 -337.49 -3.92 -32.98 16 6 C 0.45 20.99 6.06 136.80 0.83 21.82 16 7 C -0.20 -9.91 5.08 -19.67 -0.10 -10.01 16 8 C -0.06 -2.64 9.77 22.47 0.22 -2.42 16 9 C -0.24 -10.57 10.03 22.41 0.22 -10.35 16 10 C -0.10 -4.30 10.01 22.25 0.22 -4.08 16 11 C -0.19 -9.39 8.68 22.71 0.20 -9.19 16 12 C 0.11 5.92 5.07 -21.12 -0.11 5.81 16 13 C -0.46 -23.22 5.69 23.40 0.13 -23.09 16 14 H 0.06 3.30 7.04 -2.91 -0.02 3.28 16 15 C 0.05 2.41 5.14 85.34 0.44 2.85 16 16 N -0.80 -38.00 10.99 21.87 0.24 -37.76 16 17 Si 0.96 36.18 29.60 68.60 2.03 38.21 16 18 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H 0.04 1.79 7.01 -2.38 -0.02 1.77 16 22 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.05 2.12 7.18 -2.39 -0.02 2.11 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.11 5.61 6.20 -2.91 -0.02 5.60 16 32 H 0.29 12.49 8.29 -92.71 -0.77 11.72 16 Total: -1.00 -57.52 267.97 1.83 -55.69 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.11 Total: 22.55 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.62 Total: -17.61 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -5.94 Total: -98.84 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -57.52 1.83 -55.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.612 kcal (2) G-P(sol) polarization free energy of solvation -57.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds