Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47246 * 125.84078 * 2 1 4 4 C 1.54148 * 103.30768 * 180.02562 * 3 2 1 5 5 N 1.46930 * 104.08356 * 359.79777 * 4 3 2 6 6 C 1.29341 * 110.13015 * 0.35876 * 5 4 3 7 7 C 1.47815 * 122.92032 * 179.87340 * 6 5 4 8 8 C 1.39953 * 119.88809 * 36.89064 * 7 6 5 9 9 C 1.36298 * 120.11776 * 179.97438 * 8 7 6 10 10 C 1.40901 * 119.88377 * 359.97438 * 9 8 7 11 11 C 1.41075 * 120.11188 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00367 * 328.02137 * 11 10 9 13 13 C 1.40143 * 119.99790 * 148.29807 * 11 10 9 14 14 N 1.30706 * 120.00144 * 344.29296 * 13 11 10 15 15 Si 1.86797 * 120.00073 * 164.29966 * 13 11 10 16 16 H 1.48493 * 109.47678 * 89.99697 * 15 13 11 17 17 H 1.48501 * 109.47044 * 210.00034 * 15 13 11 18 18 H 1.48505 * 109.46875 * 329.99267 * 15 13 11 19 19 C 1.40897 * 119.77585 * 0.27568 * 10 9 8 20 20 C 1.36311 * 119.88107 * 359.46564 * 19 10 9 21 21 H 1.08997 * 109.46675 * 185.50824 * 1 2 3 22 22 H 1.09005 * 109.47055 * 305.50757 * 1 2 3 23 23 H 1.08998 * 109.47518 * 65.50902 * 1 2 3 24 24 H 1.08998 * 110.65237 * 298.45530 * 3 2 1 25 25 H 1.09005 * 110.65236 * 61.38268 * 3 2 1 26 26 H 1.08994 * 110.50883 * 118.64740 * 4 3 2 27 27 H 1.08999 * 110.50932 * 241.21600 * 4 3 2 28 28 H 1.08002 * 119.94223 * 359.97438 * 8 7 6 29 29 H 1.07997 * 120.05846 * 179.97438 * 9 8 7 30 30 H 0.96993 * 120.00364 * 180.02562 * 14 13 11 31 31 H 1.07996 * 120.06341 * 179.70173 * 19 10 9 32 32 H 1.07992 * 119.94355 * 180.27427 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3272 1.1936 0.0000 4 6 3.7510 0.6029 -0.0007 5 7 3.5351 -0.8504 0.0041 6 6 2.2685 -1.1123 -0.0006 7 6 1.7330 -2.4901 -0.0003 8 6 2.3820 -3.4904 0.7324 9 6 1.8920 -4.7622 0.7364 10 6 0.7296 -5.0690 0.0014 11 6 0.2180 -6.3837 0.0026 12 1 0.8902 -7.2248 0.0868 13 6 -1.1622 -6.5986 -0.1114 14 7 -1.9959 -5.6119 0.0884 15 14 -1.8104 -8.2950 -0.5486 16 1 -2.0435 -9.0717 0.6954 17 1 -3.0874 -8.1599 -1.2944 18 1 -0.8156 -9.0021 -1.3946 19 6 0.0831 -4.0595 -0.7389 20 6 0.5782 -2.7895 -0.7320 21 1 -0.3632 -1.0229 0.0986 22 1 -0.3633 0.5969 0.8366 23 1 -0.3634 0.4260 -0.9352 24 1 2.1583 1.7898 -0.8967 25 1 2.1563 1.7914 0.8954 26 1 4.2909 0.9089 -0.8967 27 1 4.2924 0.9104 0.8940 28 1 3.2726 -3.2541 1.2958 29 1 2.3938 -5.5335 1.3018 30 1 -2.9511 -5.7607 0.0099 31 1 -0.8054 -4.2906 -1.3077 32 1 0.0809 -2.0141 -1.2955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214981463.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = 36.505633 kcal Electronic energy + Delta-G solvation = -15321.804209 eV Core-core repulsion = 12860.556441 eV Total energy + Delta-G solvation = -2461.247768 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96905 -39.13087 -35.63991 -34.06261 -32.57091 -31.36387 -30.06157 -27.46709 -26.87435 -23.45809 -23.09579 -22.37280 -20.15934 -19.26983 -17.49214 -17.15321 -16.88566 -15.86089 -15.68314 -15.40452 -14.84309 -14.42021 -14.27807 -14.00003 -13.69487 -13.45517 -13.03470 -12.87365 -12.79218 -12.74083 -12.53358 -12.17438 -11.93490 -11.54772 -11.23444 -11.01496 -10.62523 -9.50044 -9.25400 -8.71173 -8.63844 -6.39514 0.57370 1.14969 1.40801 1.43792 1.55675 1.93128 2.21687 2.30027 2.76764 3.59990 3.75578 3.83516 4.18513 4.20028 4.37499 4.47067 4.51277 4.65625 4.70563 4.88754 4.95403 5.02008 5.08014 5.13835 5.26706 5.33288 5.64492 5.67375 5.84454 6.03708 6.06411 6.29577 6.60051 6.63736 6.86208 6.94746 7.25363 8.29475 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053413 B = 0.006174 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.088148 B = 4533.754183 C = 4934.075990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.083 3.917 4 C 0.021 3.979 5 N -0.633 5.633 6 C 0.434 3.566 7 C -0.196 4.196 8 C -0.041 4.041 9 C -0.242 4.242 10 C 0.101 3.899 11 C -0.493 4.493 12 H 0.081 0.919 13 C 0.040 3.960 14 N -0.816 5.816 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.259 1.259 19 C -0.182 4.182 20 C -0.067 4.067 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.292 0.708 31 H 0.102 0.898 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 8.191 -0.959 8.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.378 5.378 3 C -0.041 4.041 4 C -0.109 4.109 5 N -0.363 5.363 6 C 0.162 3.838 7 C -0.199 4.199 8 C -0.061 4.061 9 C -0.261 4.261 10 C 0.098 3.902 11 C -0.521 4.521 12 H 0.099 0.901 13 C -0.177 4.177 14 N -0.441 5.441 15 Si 0.803 3.197 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.183 1.183 19 C -0.202 4.202 20 C -0.087 4.087 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.379 8.014 -0.935 8.078 hybrid contribution -0.915 -0.086 -0.026 0.919 sum -0.536 7.929 -0.961 8.004 Atomic orbital electron populations 1.21747 0.77064 1.03516 1.02075 1.48332 1.06357 1.04365 1.78701 1.22645 0.90563 0.87946 1.02918 1.23110 0.96061 0.88954 1.02732 1.74552 1.13631 1.14142 1.33932 1.21361 0.87218 0.88093 0.87176 1.17642 1.01049 0.89780 1.11472 1.20459 0.96820 0.92399 0.96449 1.20923 1.02419 0.96225 1.06540 1.18058 0.90690 0.93974 0.87497 1.19903 0.93197 0.93388 1.45651 0.90104 1.26768 0.96612 1.03030 0.91277 1.69775 1.05065 1.35533 1.33730 0.85193 0.78230 0.76852 0.79426 1.18688 1.18902 1.18309 1.20811 1.02382 0.93395 1.03599 1.20667 0.94128 0.96205 0.97679 0.90929 0.91115 0.91325 0.89749 0.89792 0.89636 0.89728 0.87640 0.87804 0.89687 0.87978 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.75 10.21 127.77 1.30 4.06 16 2 N -0.65 -21.54 3.46 -719.31 -2.49 -24.03 16 3 C 0.08 2.13 7.76 86.63 0.67 2.81 16 4 C 0.02 0.63 8.04 86.69 0.70 1.32 16 5 N -0.63 -25.61 11.47 -337.43 -3.87 -29.48 16 6 C 0.43 17.67 7.22 136.88 0.99 18.66 16 7 C -0.20 -8.93 5.63 -19.91 -0.11 -9.04 16 8 C -0.04 -1.95 9.59 22.23 0.21 -1.74 16 9 C -0.24 -12.04 9.73 22.47 0.22 -11.82 16 10 C 0.10 5.34 5.49 -21.28 -0.12 5.22 16 11 C -0.49 -25.67 9.01 23.43 0.21 -25.46 16 12 H 0.08 4.06 7.89 -2.91 -0.02 4.04 16 13 C 0.04 1.92 5.12 85.32 0.44 2.36 16 14 N -0.82 -40.52 11.34 21.86 0.25 -40.28 16 15 Si 0.98 36.37 29.59 68.60 2.03 38.40 16 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 17 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 19 C -0.18 -9.22 8.59 22.47 0.19 -9.02 16 20 C -0.07 -3.04 7.80 22.24 0.17 -2.86 16 21 H 0.07 2.40 4.96 -2.39 -0.01 2.38 16 22 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.29 13.00 8.29 -92.71 -0.77 12.23 16 31 H 0.10 5.28 6.64 -2.91 -0.02 5.26 16 32 H 0.12 4.63 6.25 -2.91 -0.02 4.61 16 Total: -1.00 -59.45 270.37 1.91 -57.54 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 1.12 Total: 23.38 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.88 Total: -25.53 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -6.11 Total: -93.79 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -59.45 1.91 -57.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981463.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.046 kcal (2) G-P(sol) polarization free energy of solvation -59.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds