Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.50708 * 109.46723 * 119.99962 * 2 1 3 5 5 N 1.30365 * 124.94651 * 300.39436 * 4 2 1 6 6 C 1.35051 * 109.83163 * 180.02562 * 5 4 2 7 7 C 1.40272 * 126.60127 * 179.78809 * 6 5 4 8 8 H 1.08005 * 119.99878 * 174.23851 * 7 6 5 9 9 C 1.39602 * 120.00178 * 354.23743 * 7 6 5 10 10 N 1.31165 * 120.00240 * 6.02866 * 9 7 6 11 11 Si 1.86803 * 120.00170 * 186.03379 * 9 7 6 12 12 H 1.48504 * 109.47182 * 94.97553 * 11 9 7 13 13 H 1.48494 * 109.47370 * 214.97991 * 11 9 7 14 14 H 1.48505 * 109.46811 * 334.98128 * 11 9 7 15 15 C 1.41488 * 106.79582 * 359.75974 * 6 5 4 16 16 C 1.39292 * 133.64317 * 179.97438 * 15 6 5 17 17 C 1.38028 * 119.14627 * 180.02562 * 16 15 6 18 18 C 1.40147 * 119.41931 * 0.02562 * 17 16 15 19 19 C 1.35318 * 120.38374 * 359.97438 * 18 17 16 20 20 N 1.36363 * 124.94704 * 120.00366 * 4 2 1 21 21 H 1.09006 * 109.46867 * 60.00186 * 1 2 3 22 22 H 1.08997 * 109.46703 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46914 * 300.00173 * 1 2 3 24 24 H 1.08994 * 109.47130 * 239.99452 * 2 1 3 25 25 H 1.09005 * 109.47167 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47218 * 299.99803 * 3 2 1 27 27 H 1.09000 * 109.47395 * 60.00122 * 3 2 1 28 28 H 0.96997 * 119.99996 * 179.97438 * 10 9 7 29 29 H 1.08001 * 120.42445 * 0.04830 * 16 15 6 30 30 H 1.07997 * 120.28847 * 179.97438 * 17 16 15 31 31 H 1.08007 * 119.80470 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.66030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2306 5 7 1.7714 -0.3543 2.4572 6 6 2.3744 -1.2020 3.3185 7 6 2.3303 -1.1426 4.7192 8 1 2.7762 -1.9311 5.3075 9 6 1.7102 -0.0643 5.3530 10 7 1.0666 0.8317 4.6436 11 14 1.7972 0.1026 7.2115 12 1 2.9271 0.9948 7.5761 13 1 0.5265 0.6816 7.7166 14 1 2.0075 -1.2359 7.8194 15 6 3.0586 -2.1619 2.5359 16 6 3.8468 -3.2683 2.8439 17 6 4.3825 -4.0188 1.8169 18 6 4.1235 -3.6529 0.4891 19 6 3.3548 -2.5737 0.2141 20 7 2.8196 -1.8238 1.2231 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.6354 1.5806 5.0840 29 1 4.0359 -3.5355 3.8731 30 1 4.9966 -4.8801 2.0347 31 1 4.5393 -4.2360 -0.3194 32 1 3.1623 -2.3025 -0.8134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214981531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 65.218384 kcal Electronic energy + Delta-G solvation = -15789.892428 eV Core-core repulsion = 13329.889738 eV Total energy + Delta-G solvation = -2460.002690 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94642 -36.17967 -34.68936 -33.20070 -31.54009 -29.25817 -27.77726 -26.60941 -24.80253 -22.59418 -21.88502 -20.51362 -18.84568 -17.38766 -15.63355 -15.43147 -14.86991 -14.38614 -14.34680 -14.05075 -13.45619 -13.07600 -12.82780 -12.49477 -11.61791 -11.46876 -11.34446 -11.21581 -10.87617 -10.81651 -10.65156 -10.47554 -10.38816 -10.17629 -10.08885 -9.57278 -8.85373 -8.29534 -7.83704 -6.53310 -6.46767 -4.04156 2.03735 2.52701 3.09372 3.13329 3.16663 3.98190 4.09255 4.41086 4.57251 5.25294 5.45416 5.49806 5.53801 5.78185 5.88280 5.90653 6.08374 6.09715 6.21196 6.30070 6.38495 6.43445 6.50706 6.80956 6.81583 6.95708 7.14437 7.21191 7.28148 7.49013 7.54420 7.99953 8.27980 8.68091 8.76278 9.03876 9.79088 10.37773 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.010901 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.375951 B = 2567.860189 C = 3686.466554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.134 4.134 4 C 0.176 3.824 5 N -0.447 5.447 6 C 0.222 3.778 7 C -0.417 4.417 8 H 0.084 0.916 9 C 0.070 3.930 10 N -0.744 5.744 11 Si 0.910 3.090 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.262 1.262 15 C -0.149 4.149 16 C 0.009 3.991 17 C -0.270 4.270 18 C -0.118 4.118 19 C -0.004 4.004 20 N -0.388 5.388 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -1.292 -5.690 5.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 C -0.192 4.192 4 C -0.080 4.080 5 N -0.168 5.168 6 C 0.093 3.907 7 C -0.452 4.452 8 H 0.102 0.898 9 C -0.153 4.153 10 N -0.368 5.368 11 Si 0.735 3.265 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.248 4.248 16 C -0.010 4.010 17 C -0.290 4.290 18 C -0.141 4.141 19 C -0.122 4.122 20 N -0.069 5.069 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.391 -0.394 -5.577 5.605 hybrid contribution 0.654 -0.746 0.476 1.100 sum 1.045 -1.140 -5.102 5.331 Atomic orbital electron populations 1.21730 0.93967 1.01522 1.02015 1.19293 0.95977 0.95204 0.91340 1.21727 1.00488 0.95005 1.02016 1.23421 0.99249 0.88963 0.96378 1.70805 1.23456 1.26593 0.95969 1.18390 0.91338 0.87912 0.93019 1.18517 1.31721 1.06040 0.88877 0.89829 1.25909 0.93811 0.95229 1.00333 1.70161 1.21537 1.08404 1.36701 0.86265 0.78340 0.79483 0.82416 1.19626 1.20264 1.18621 1.19227 1.15843 1.05835 0.83929 1.20336 0.91530 0.90765 0.98415 1.20467 1.11566 1.04765 0.92222 1.20231 1.00060 0.96771 0.97042 1.20912 1.03081 0.96351 0.91892 1.42207 1.37165 1.21452 1.06068 0.93137 0.93375 0.90876 0.91813 0.93388 0.93132 0.90881 0.91601 0.86341 0.87696 0.86622 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.17 37.16 0.34 -1.96 16 2 C 0.00 0.04 3.32 -91.77 -0.30 -0.26 16 3 C -0.13 -2.30 9.17 37.16 0.34 -1.96 16 4 C 0.18 4.17 6.45 -154.30 -1.00 3.18 16 5 N -0.45 -12.15 9.43 -7.89 -0.07 -12.23 16 6 C 0.22 6.20 6.71 -84.45 -0.57 5.63 16 7 C -0.42 -11.31 9.33 -38.31 -0.36 -11.67 16 8 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 9 C 0.07 1.79 5.48 -17.33 -0.10 1.69 16 10 N -0.74 -19.95 11.97 55.53 0.66 -19.29 16 11 Si 0.91 18.93 29.56 -169.99 -5.03 13.91 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 15 C -0.15 -3.83 6.78 -83.62 -0.57 -4.39 16 16 C 0.01 0.21 10.12 -39.27 -0.40 -0.18 16 17 C -0.27 -5.41 10.15 -38.94 -0.40 -5.80 16 18 C -0.12 -2.23 9.98 -39.91 -0.40 -2.63 16 19 C 0.00 -0.08 10.69 -16.46 -0.18 -0.26 16 20 N -0.39 -9.23 2.95 -57.52 -0.17 -9.40 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.06 1.05 7.24 -51.93 -0.38 0.67 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.13 2.17 7.41 -52.49 -0.39 1.78 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -30.14 276.41 -8.13 -38.26 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.12 Total: 3.20 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.57 Total: -18.63 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.42 Total: -40.91 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.14 -8.13 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.482 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds