Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.50708 * 109.46723 * 119.99962 * 2 1 3 5 5 N 1.30365 * 124.94651 * 300.39436 * 4 2 1 6 6 C 1.35051 * 109.83163 * 180.02562 * 5 4 2 7 7 C 1.40272 * 126.60127 * 179.78809 * 6 5 4 8 8 H 1.08005 * 119.99878 * 174.23851 * 7 6 5 9 9 C 1.39602 * 120.00178 * 354.23743 * 7 6 5 10 10 N 1.31165 * 120.00240 * 6.02866 * 9 7 6 11 11 Si 1.86803 * 120.00170 * 186.03379 * 9 7 6 12 12 H 1.48504 * 109.47182 * 94.97553 * 11 9 7 13 13 H 1.48494 * 109.47370 * 214.97991 * 11 9 7 14 14 H 1.48505 * 109.46811 * 334.98128 * 11 9 7 15 15 C 1.41488 * 106.79582 * 359.75974 * 6 5 4 16 16 C 1.39292 * 133.64317 * 179.97438 * 15 6 5 17 17 C 1.38028 * 119.14627 * 180.02562 * 16 15 6 18 18 C 1.40147 * 119.41931 * 0.02562 * 17 16 15 19 19 C 1.35318 * 120.38374 * 359.97438 * 18 17 16 20 20 N 1.36363 * 124.94704 * 120.00366 * 4 2 1 21 21 H 1.09006 * 109.46867 * 60.00186 * 1 2 3 22 22 H 1.08997 * 109.46703 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46914 * 300.00173 * 1 2 3 24 24 H 1.08994 * 109.47130 * 239.99452 * 2 1 3 25 25 H 1.09005 * 109.47167 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47218 * 299.99803 * 3 2 1 27 27 H 1.09000 * 109.47395 * 60.00122 * 3 2 1 28 28 H 0.96997 * 119.99996 * 179.97438 * 10 9 7 29 29 H 1.08001 * 120.42445 * 0.04830 * 16 15 6 30 30 H 1.07997 * 120.28847 * 179.97438 * 17 16 15 31 31 H 1.08007 * 119.80470 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.66030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2306 5 7 1.7714 -0.3543 2.4572 6 6 2.3744 -1.2020 3.3185 7 6 2.3303 -1.1426 4.7192 8 1 2.7762 -1.9311 5.3075 9 6 1.7102 -0.0643 5.3530 10 7 1.0666 0.8317 4.6436 11 14 1.7972 0.1026 7.2115 12 1 2.9271 0.9948 7.5761 13 1 0.5265 0.6816 7.7166 14 1 2.0075 -1.2359 7.8194 15 6 3.0586 -2.1619 2.5359 16 6 3.8468 -3.2683 2.8439 17 6 4.3825 -4.0188 1.8169 18 6 4.1235 -3.6529 0.4891 19 6 3.3548 -2.5737 0.2141 20 7 2.8196 -1.8238 1.2231 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.6354 1.5806 5.0840 29 1 4.0359 -3.5355 3.8731 30 1 4.9966 -4.8801 2.0347 31 1 4.5393 -4.2360 -0.3194 32 1 3.1623 -2.3025 -0.8134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214981531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 48.608720 kcal Electronic energy + Delta-G solvation = -15790.612677 eV Core-core repulsion = 13329.889738 eV Total energy + Delta-G solvation = -2460.722939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.73434 -37.86235 -36.29674 -34.93941 -33.32075 -30.98329 -29.60773 -27.98344 -26.58284 -24.23980 -23.54856 -22.32931 -20.47987 -19.20119 -17.31606 -17.20911 -16.56865 -16.13763 -15.98989 -15.58286 -14.98197 -14.70658 -14.56398 -13.92061 -13.16415 -13.08285 -12.98298 -12.79324 -12.50243 -12.36238 -12.32436 -12.02059 -11.98268 -11.81998 -11.69734 -11.32937 -10.68317 -10.17498 -9.61375 -8.37526 -8.29661 -5.95389 0.35451 0.81077 1.40511 1.45101 1.54956 2.26380 2.39252 2.55571 2.87573 3.63182 3.74144 3.99532 4.03003 4.31970 4.34292 4.47177 4.51701 4.58829 4.73974 4.83774 4.90589 5.00586 5.02548 5.19849 5.33272 5.41386 5.42368 5.54907 5.59639 5.75171 5.78824 6.19582 6.40186 6.86116 6.92056 7.20848 7.94758 8.57009 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.010901 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.375951 B = 2567.860189 C = 3686.466554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.003 3.997 3 C -0.126 4.126 4 C 0.150 3.850 5 N -0.479 5.479 6 C 0.168 3.832 7 C -0.463 4.463 8 H 0.081 0.919 9 C 0.024 3.976 10 N -0.793 5.793 11 Si 0.987 3.013 12 H -0.267 1.267 13 H -0.270 1.270 14 H -0.256 1.256 15 C -0.169 4.169 16 C -0.036 4.036 17 C -0.226 4.226 18 C -0.126 4.126 19 C -0.006 4.006 20 N -0.390 5.390 21 H 0.092 0.908 22 H 0.040 0.960 23 H 0.038 0.962 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.276 0.724 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.168 0.832 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -2.879 -8.160 8.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 C -0.184 4.184 4 C -0.105 4.105 5 N -0.199 5.199 6 C 0.039 3.961 7 C -0.498 4.498 8 H 0.099 0.901 9 C -0.193 4.193 10 N -0.419 5.419 11 Si 0.808 3.192 12 H -0.192 1.192 13 H -0.195 1.195 14 H -0.180 1.180 15 C -0.270 4.270 16 C -0.056 4.056 17 C -0.246 4.246 18 C -0.148 4.148 19 C -0.124 4.124 20 N -0.069 5.069 21 H 0.111 0.889 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.605 -1.986 -8.071 8.465 hybrid contribution 0.468 -0.541 0.912 1.159 sum 2.074 -2.527 -7.159 7.870 Atomic orbital electron populations 1.21657 0.93163 1.01190 1.02370 1.19550 0.96595 0.95511 0.90084 1.21654 0.99963 0.94397 1.02367 1.24299 0.99631 0.89479 0.97114 1.70657 1.24168 1.27483 0.97622 1.18837 0.93531 0.89766 0.93953 1.18733 1.34240 1.07381 0.89432 0.90051 1.26778 0.92931 0.94394 1.05217 1.70275 1.23539 1.09442 1.38634 0.85130 0.78466 0.79506 0.76134 1.19165 1.19466 1.17991 1.19568 1.16234 1.06442 0.84792 1.20584 0.93535 0.91516 0.99931 1.21138 1.07695 1.03496 0.92226 1.20889 0.99370 0.96661 0.97904 1.21858 1.01777 0.95817 0.92959 1.42541 1.36509 1.21487 1.06321 0.88909 0.94033 0.94268 0.88617 0.94067 0.88899 0.94287 0.91465 0.85843 0.83964 0.81445 0.81008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.17 71.98 0.66 -3.54 16 2 C 0.00 0.10 3.32 -11.54 -0.04 0.06 16 3 C -0.13 -4.20 9.17 71.98 0.66 -3.54 16 4 C 0.15 7.25 6.45 137.74 0.89 8.13 16 5 N -0.48 -27.53 9.43 -178.88 -1.69 -29.21 16 6 C 0.17 9.98 6.71 39.94 0.27 10.24 16 7 C -0.46 -26.94 9.33 23.09 0.22 -26.72 16 8 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 9 C 0.02 1.30 5.48 85.12 0.47 1.77 16 10 N -0.79 -45.62 11.97 21.78 0.26 -45.36 16 11 Si 0.99 41.08 29.56 68.60 2.03 43.11 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 C -0.17 -8.88 6.78 39.28 0.27 -8.62 16 16 C -0.04 -1.59 10.12 22.47 0.23 -1.37 16 17 C -0.23 -8.11 10.15 22.68 0.23 -7.88 16 18 C -0.13 -4.07 9.98 22.06 0.22 -3.85 16 19 C -0.01 -0.23 10.69 83.27 0.89 0.66 16 20 N -0.39 -18.24 2.95 -335.91 -0.99 -19.23 16 21 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.10 2.77 7.24 -2.39 -0.02 2.76 16 25 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 29 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.17 4.71 7.41 -2.91 -0.02 4.69 16 Total: -1.00 -71.74 276.41 5.67 -66.07 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.10 Total: 19.28 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 4.96 Total: -34.65 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -2.42 Total: -93.80 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -71.74 5.67 -66.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.680 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds