Wall clock time and date at job start Mon Mar 30 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47261 * 2 1 4 4 N 1.31060 * 125.32329 * 267.26227 * 3 2 1 5 5 C 1.33180 * 109.98823 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.23800 * 180.02562 * 5 4 3 7 7 C 1.38834 * 107.52599 * 359.97438 * 5 4 3 8 8 C 1.40053 * 133.50972 * 180.02562 * 7 5 4 9 9 C 1.38467 * 119.83296 * 179.97438 * 8 7 5 10 10 C 1.38617 * 119.94599 * 0.02562 * 9 8 7 11 11 C 1.40041 * 120.07643 * 359.97438 * 10 9 8 12 12 C 1.39254 * 120.03852 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00264 * 148.28095 * 12 11 10 14 14 C 1.40121 * 119.99734 * 328.28619 * 12 11 10 15 15 N 1.30796 * 120.00000 * 162.95480 * 14 12 11 16 16 Si 1.86802 * 120.00352 * 342.94993 * 14 12 11 17 17 H 1.48502 * 109.46796 * 94.69857 * 16 14 12 18 18 H 1.48493 * 109.47370 * 214.69520 * 16 14 12 19 19 H 1.48494 * 109.47086 * 334.69813 * 16 14 12 20 20 N 1.35619 * 125.32243 * 87.26331 * 3 2 1 21 21 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.46851 * 300.00143 * 1 2 3 23 23 H 1.09006 * 109.46596 * 60.00044 * 1 2 3 24 24 H 1.09005 * 109.47067 * 239.99812 * 2 1 3 25 25 H 1.09004 * 109.47098 * 120.00527 * 2 1 3 26 26 H 1.09001 * 109.47353 * 269.97358 * 6 5 4 27 27 H 1.08998 * 109.47126 * 29.98078 * 6 5 4 28 28 H 1.09008 * 109.47027 * 149.97530 * 6 5 4 29 29 H 1.07994 * 120.08384 * 359.97438 * 8 7 5 30 30 H 1.07995 * 120.02430 * 179.72541 * 9 8 7 31 31 H 1.07997 * 119.95954 * 179.97438 * 10 9 8 32 32 H 0.96997 * 120.00263 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3332 2.1182 -1.0681 5 6 2.7460 3.3346 -0.7163 6 6 3.1814 4.4328 -1.6518 7 6 2.7010 3.4068 0.6695 8 6 3.0099 4.4132 1.5931 9 6 2.8562 4.1751 2.9484 10 6 2.3980 2.9425 3.3869 11 6 2.0900 1.9383 2.4607 12 6 1.6293 0.7005 2.9019 13 1 0.9377 0.1343 2.2957 14 6 2.0629 0.1897 4.1326 15 7 1.4031 -0.7833 4.7058 16 14 3.5834 0.8982 4.9545 17 1 3.1781 1.9450 5.9267 18 1 4.3108 -0.1832 5.6662 19 1 4.4699 1.4961 3.9241 20 7 2.2440 2.1777 1.1053 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.2542 4.3555 -1.8287 27 1 2.6492 4.3362 -2.5981 28 1 2.9557 5.4013 -1.2053 29 1 3.3671 5.3726 1.2491 30 1 3.0977 4.9475 3.6636 31 1 2.2784 2.7564 4.4439 32 1 1.7030 -1.1367 5.5579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214981729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:18 Heat of formation + Delta-G solvation = 53.940798 kcal Electronic energy + Delta-G solvation = -16042.558405 eV Core-core repulsion = 13582.066682 eV Total energy + Delta-G solvation = -2460.491722 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46654 -36.46515 -34.42088 -33.26725 -31.72669 -30.08670 -29.45600 -26.16567 -24.94363 -22.61331 -22.32561 -20.29960 -19.39517 -17.61875 -16.14682 -15.74049 -15.00864 -14.81802 -14.44509 -13.75858 -13.36800 -12.97195 -12.79063 -12.46051 -12.37191 -11.84630 -11.77287 -11.50451 -11.38929 -11.05291 -10.79293 -10.51116 -10.34523 -10.10079 -10.07363 -9.62735 -9.20166 -9.15620 -8.03100 -7.43358 -6.48157 -4.83896 1.99583 2.45925 2.87414 2.96864 3.08711 3.68441 3.80201 3.90089 4.22575 4.86810 5.22777 5.64144 5.74851 5.85287 5.89161 5.98715 6.11855 6.27504 6.29921 6.32826 6.35911 6.40255 6.46353 6.61231 6.63959 6.78016 6.92171 6.99897 7.29586 7.41097 7.58331 7.79728 7.80219 7.98783 8.13005 8.57354 9.04657 9.53250 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.012319 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.853844 B = 2272.335654 C = 3131.369300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C 0.145 3.855 4 N -0.458 5.458 5 C -0.082 4.082 6 C -0.040 4.040 7 C 0.073 3.927 8 C -0.253 4.253 9 C -0.033 4.033 10 C -0.335 4.335 11 C 0.269 3.731 12 C -0.434 4.434 13 H 0.119 0.881 14 C 0.091 3.909 15 N -0.771 5.771 16 Si 0.921 3.079 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.243 1.243 20 N -0.376 5.376 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 2.381 -1.328 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.109 4.109 4 N -0.173 5.173 5 C -0.214 4.214 6 C -0.098 4.098 7 C -0.038 4.038 8 C -0.273 4.273 9 C -0.055 4.055 10 C -0.356 4.356 11 C 0.166 3.834 12 C -0.463 4.463 13 H 0.136 0.864 14 C -0.134 4.134 15 N -0.392 5.392 16 Si 0.746 3.254 17 H -0.188 1.188 18 H -0.213 1.213 19 H -0.166 1.166 20 N -0.050 5.050 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.452 1.738 -2.002 3.023 hybrid contribution 0.546 0.539 1.444 1.635 sum 1.998 2.277 -0.558 3.080 Atomic orbital electron populations 1.21753 0.95223 1.01229 1.01935 1.19950 0.95560 0.88102 1.03504 1.22703 1.11777 0.96659 0.79790 1.69509 1.15384 1.04303 1.28148 1.20549 1.15760 0.95282 0.89827 1.19671 0.99579 0.93968 0.96617 1.19275 1.03729 0.86640 0.94148 1.19776 1.17733 0.98353 0.91462 1.20695 0.94396 0.95811 0.94560 1.20370 1.23099 0.94516 0.97640 1.17958 0.91941 0.94678 0.78790 1.19333 1.22333 1.01608 1.03074 0.86376 1.26199 0.98422 0.93594 0.95215 1.69582 1.35103 1.19496 1.14978 0.86065 0.80901 0.78223 0.80201 1.18844 1.21309 1.16580 1.43388 1.43421 1.12033 1.06169 0.92526 0.92359 0.92999 0.90542 0.88992 0.93021 0.92463 0.92471 0.86734 0.87646 0.86267 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.38 37.16 0.35 -2.25 16 2 C -0.03 -0.64 5.60 -27.88 -0.16 -0.80 16 3 C 0.14 3.40 7.21 -154.42 -1.11 2.29 16 4 N -0.46 -10.87 11.18 -6.08 -0.07 -10.94 16 5 C -0.08 -1.87 7.23 -81.79 -0.59 -2.46 16 6 C -0.04 -0.71 10.44 36.01 0.38 -0.34 16 7 C 0.07 1.74 6.74 -84.10 -0.57 1.18 16 8 C -0.25 -5.50 10.13 -38.82 -0.39 -5.89 16 9 C -0.03 -0.71 10.08 -39.36 -0.40 -1.11 16 10 C -0.34 -7.81 7.11 -38.77 -0.28 -8.09 16 11 C 0.27 6.63 5.96 -83.80 -0.50 6.13 16 12 C -0.43 -10.58 8.07 -38.50 -0.31 -10.89 16 13 H 0.12 2.90 4.36 -52.49 -0.23 2.67 16 14 C 0.09 2.13 5.39 -17.29 -0.09 2.04 16 15 N -0.77 -17.92 13.93 55.56 0.77 -17.15 16 16 Si 0.92 19.11 24.52 -169.99 -4.17 14.95 16 17 H -0.26 -5.25 6.71 56.52 0.38 -4.87 16 18 H -0.29 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.24 -5.40 6.89 56.52 0.39 -5.01 16 20 N -0.38 -9.33 3.01 -55.58 -0.17 -9.49 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 1.16 7.01 -51.93 -0.36 0.80 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.09 1.91 5.95 -51.93 -0.31 1.60 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.12 2.67 4.81 -52.49 -0.25 2.42 16 32 H 0.30 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -27.13 262.07 -7.06 -34.18 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.71 Total: 4.71 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.67 Total: -20.21 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.54 Total: -37.58 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.17 Total: 14.95 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.13 -7.06 -34.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.123 kcal (2) G-P(sol) polarization free energy of solvation -27.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds