Wall clock time and date at job start Mon Mar 30 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47261 * 2 1 4 4 N 1.31060 * 125.32329 * 267.26227 * 3 2 1 5 5 C 1.33180 * 109.98823 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.23800 * 180.02562 * 5 4 3 7 7 C 1.38834 * 107.52599 * 359.97438 * 5 4 3 8 8 C 1.40053 * 133.50972 * 180.02562 * 7 5 4 9 9 C 1.38467 * 119.83296 * 179.97438 * 8 7 5 10 10 C 1.38617 * 119.94599 * 0.02562 * 9 8 7 11 11 C 1.40041 * 120.07643 * 359.97438 * 10 9 8 12 12 C 1.39254 * 120.03852 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00264 * 148.28095 * 12 11 10 14 14 C 1.40121 * 119.99734 * 328.28619 * 12 11 10 15 15 N 1.30796 * 120.00000 * 162.95480 * 14 12 11 16 16 Si 1.86802 * 120.00352 * 342.94993 * 14 12 11 17 17 H 1.48502 * 109.46796 * 94.69857 * 16 14 12 18 18 H 1.48493 * 109.47370 * 214.69520 * 16 14 12 19 19 H 1.48494 * 109.47086 * 334.69813 * 16 14 12 20 20 N 1.35619 * 125.32243 * 87.26331 * 3 2 1 21 21 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.46851 * 300.00143 * 1 2 3 23 23 H 1.09006 * 109.46596 * 60.00044 * 1 2 3 24 24 H 1.09005 * 109.47067 * 239.99812 * 2 1 3 25 25 H 1.09004 * 109.47098 * 120.00527 * 2 1 3 26 26 H 1.09001 * 109.47353 * 269.97358 * 6 5 4 27 27 H 1.08998 * 109.47126 * 29.98078 * 6 5 4 28 28 H 1.09008 * 109.47027 * 149.97530 * 6 5 4 29 29 H 1.07994 * 120.08384 * 359.97438 * 8 7 5 30 30 H 1.07995 * 120.02430 * 179.72541 * 9 8 7 31 31 H 1.07997 * 119.95954 * 179.97438 * 10 9 8 32 32 H 0.96997 * 120.00263 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3332 2.1182 -1.0681 5 6 2.7460 3.3346 -0.7163 6 6 3.1814 4.4328 -1.6518 7 6 2.7010 3.4068 0.6695 8 6 3.0099 4.4132 1.5931 9 6 2.8562 4.1751 2.9484 10 6 2.3980 2.9425 3.3869 11 6 2.0900 1.9383 2.4607 12 6 1.6293 0.7005 2.9019 13 1 0.9377 0.1343 2.2957 14 6 2.0629 0.1897 4.1326 15 7 1.4031 -0.7833 4.7058 16 14 3.5834 0.8982 4.9545 17 1 3.1781 1.9450 5.9267 18 1 4.3108 -0.1832 5.6662 19 1 4.4699 1.4961 3.9241 20 7 2.2440 2.1777 1.1053 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.2542 4.3555 -1.8287 27 1 2.6492 4.3362 -2.5981 28 1 2.9557 5.4013 -1.2053 29 1 3.3671 5.3726 1.2491 30 1 3.0977 4.9475 3.6636 31 1 2.2784 2.7564 4.4439 32 1 1.7030 -1.1367 5.5579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214981729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:18 Heat of formation + Delta-G solvation = 39.660955 kcal Electronic energy + Delta-G solvation = -16043.177625 eV Core-core repulsion = 13582.066682 eV Total energy + Delta-G solvation = -2461.110943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.22098 -38.21025 -36.11783 -34.95920 -33.37937 -31.82350 -31.06097 -27.85222 -26.58093 -24.29308 -24.07522 -21.97375 -21.15240 -19.36446 -17.88491 -17.45525 -16.75969 -16.57090 -16.09269 -15.40211 -15.01195 -14.61024 -14.45912 -14.00841 -13.89430 -13.47655 -13.28319 -13.14382 -12.92535 -12.72391 -12.36507 -12.11673 -12.02504 -11.79978 -11.77064 -11.29983 -10.97528 -10.90523 -9.81652 -9.17901 -8.23638 -6.61858 0.25267 0.69425 1.21553 1.31340 1.41927 2.01098 2.06497 2.15115 2.48680 3.09465 3.60775 3.99410 4.13803 4.26186 4.35037 4.43584 4.50660 4.63182 4.69002 4.81127 4.90793 4.93885 4.94994 5.04204 5.11199 5.22960 5.27784 5.31865 5.55477 5.72460 5.82618 6.01069 6.10382 6.23262 6.38076 6.78350 7.27174 7.84207 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.012319 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.853844 B = 2272.335654 C = 3131.369300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.030 4.030 3 C 0.126 3.874 4 N -0.475 5.475 5 C -0.088 4.088 6 C -0.038 4.038 7 C 0.035 3.965 8 C -0.246 4.246 9 C -0.042 4.042 10 C -0.346 4.346 11 C 0.247 3.753 12 C -0.457 4.457 13 H 0.105 0.895 14 C 0.068 3.932 15 N -0.794 5.794 16 Si 0.965 3.035 17 H -0.247 1.247 18 H -0.270 1.270 19 H -0.268 1.268 20 N -0.389 5.389 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 3.635 -1.307 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.127 4.127 4 N -0.191 5.191 5 C -0.220 4.220 6 C -0.096 4.096 7 C -0.075 4.075 8 C -0.267 4.267 9 C -0.063 4.063 10 C -0.367 4.367 11 C 0.145 3.855 12 C -0.487 4.487 13 H 0.123 0.877 14 C -0.156 4.156 15 N -0.417 5.417 16 Si 0.788 3.212 17 H -0.172 1.172 18 H -0.196 1.196 19 H -0.192 1.192 20 N -0.063 5.063 21 H 0.102 0.898 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.204 2.981 -1.964 4.195 hybrid contribution 0.311 0.209 1.324 1.376 sum 2.516 3.189 -0.640 4.112 Atomic orbital electron populations 1.21654 0.93915 1.02657 1.00776 1.20017 0.96627 0.86618 1.03630 1.23347 1.11836 0.97792 0.79775 1.69554 1.16160 1.05066 1.28315 1.21435 1.14307 0.95870 0.90416 1.19812 1.00536 0.93115 0.96108 1.19917 1.05107 0.87205 0.95277 1.20253 1.16028 0.98966 0.91406 1.21101 0.93815 0.96009 0.95360 1.20629 1.23136 0.95119 0.97778 1.18213 0.92860 0.95261 0.79209 1.19368 1.23234 1.02121 1.03928 0.87711 1.26676 0.99903 0.93765 0.95243 1.69565 1.36113 1.20126 1.15858 0.85422 0.78181 0.78443 0.79165 1.17195 1.19615 1.19230 1.43616 1.43564 1.12695 1.06437 0.89817 0.94816 0.92620 0.88736 0.90321 0.91480 0.91474 0.90461 0.83573 0.83805 0.85748 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.38 71.98 0.68 -4.13 16 2 C -0.03 -1.22 5.60 29.85 0.17 -1.05 16 3 C 0.13 5.97 7.21 137.78 0.99 6.96 16 4 N -0.47 -22.35 11.18 -173.16 -1.94 -24.28 16 5 C -0.09 -3.88 7.23 42.50 0.31 -3.58 16 6 C -0.04 -1.24 10.44 71.24 0.74 -0.50 16 7 C 0.04 1.64 6.74 38.73 0.26 1.91 16 8 C -0.25 -10.14 10.13 22.76 0.23 -9.91 16 9 C -0.04 -1.70 10.08 22.41 0.23 -1.47 16 10 C -0.35 -15.81 7.11 22.80 0.16 -15.64 16 11 C 0.25 12.29 5.96 38.77 0.23 12.52 16 12 C -0.46 -22.82 8.07 22.97 0.19 -22.64 16 13 H 0.11 5.36 4.36 -2.91 -0.01 5.35 16 14 C 0.07 3.16 5.39 85.30 0.46 3.62 16 15 N -0.79 -37.09 13.93 21.86 0.30 -36.79 16 16 Si 0.96 38.67 24.52 68.60 1.68 40.36 16 17 H -0.25 -9.21 6.71 99.48 0.67 -8.54 16 18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.27 -11.77 6.89 99.48 0.68 -11.09 16 20 N -0.39 -19.40 3.01 -329.76 -0.99 -20.40 16 21 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 22 H 0.03 1.37 7.01 -2.39 -0.02 1.35 16 23 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 25 H 0.08 3.38 5.95 -2.39 -0.01 3.36 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.13 5.43 4.81 -2.91 -0.01 5.42 16 32 H 0.31 12.71 8.30 -92.71 -0.77 11.94 16 Total: -1.00 -57.79 262.07 4.77 -53.02 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 1.07 Total: 22.00 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 4.64 Total: -33.91 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.62 Total: -81.47 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.68 Total: 40.36 kcal Total: -57.79 4.77 -53.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.683 kcal (2) G-P(sol) polarization free energy of solvation -57.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds