Wall clock time and date at job start Mon Mar 30 2020 02:49:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50703 * 109.47261 * 2 1
4 4 N 1.31060 * 125.32329 * 267.26227 * 3 2 1
5 5 C 1.33180 * 109.98823 * 180.02562 * 4 3 2
6 6 C 1.50699 * 126.23800 * 180.02562 * 5 4 3
7 7 C 1.38834 * 107.52599 * 359.97438 * 5 4 3
8 8 C 1.40053 * 133.50972 * 180.02562 * 7 5 4
9 9 C 1.38467 * 119.83296 * 179.97438 * 8 7 5
10 10 C 1.38617 * 119.94599 * 0.02562 * 9 8 7
11 11 C 1.40041 * 120.07643 * 359.97438 * 10 9 8
12 12 C 1.39254 * 120.03852 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00264 * 148.28095 * 12 11 10
14 14 C 1.40121 * 119.99734 * 328.28619 * 12 11 10
15 15 N 1.30796 * 120.00000 * 162.95480 * 14 12 11
16 16 Si 1.86802 * 120.00352 * 342.94993 * 14 12 11
17 17 H 1.48502 * 109.46796 * 94.69857 * 16 14 12
18 18 H 1.48493 * 109.47370 * 214.69520 * 16 14 12
19 19 H 1.48494 * 109.47086 * 334.69813 * 16 14 12
20 20 N 1.35619 * 125.32243 * 87.26331 * 3 2 1
21 21 H 1.08998 * 109.46919 * 179.97438 * 1 2 3
22 22 H 1.08992 * 109.46851 * 300.00143 * 1 2 3
23 23 H 1.09006 * 109.46596 * 60.00044 * 1 2 3
24 24 H 1.09005 * 109.47067 * 239.99812 * 2 1 3
25 25 H 1.09004 * 109.47098 * 120.00527 * 2 1 3
26 26 H 1.09001 * 109.47353 * 269.97358 * 6 5 4
27 27 H 1.08998 * 109.47126 * 29.98078 * 6 5 4
28 28 H 1.09008 * 109.47027 * 149.97530 * 6 5 4
29 29 H 1.07994 * 120.08384 * 359.97438 * 8 7 5
30 30 H 1.07995 * 120.02430 * 179.72541 * 9 8 7
31 31 H 1.07997 * 119.95954 * 179.97438 * 10 9 8
32 32 H 0.96997 * 120.00263 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.3332 2.1182 -1.0681
5 6 2.7460 3.3346 -0.7163
6 6 3.1814 4.4328 -1.6518
7 6 2.7010 3.4068 0.6695
8 6 3.0099 4.4132 1.5931
9 6 2.8562 4.1751 2.9484
10 6 2.3980 2.9425 3.3869
11 6 2.0900 1.9383 2.4607
12 6 1.6293 0.7005 2.9019
13 1 0.9377 0.1343 2.2957
14 6 2.0629 0.1897 4.1326
15 7 1.4031 -0.7833 4.7058
16 14 3.5834 0.8982 4.9545
17 1 3.1781 1.9450 5.9267
18 1 4.3108 -0.1832 5.6662
19 1 4.4699 1.4961 3.9241
20 7 2.2440 2.1777 1.1053
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5139 -0.8901
24 1 1.8934 -0.5139 -0.8900
25 1 1.8934 -0.5139 0.8900
26 1 4.2542 4.3555 -1.8287
27 1 2.6492 4.3362 -2.5981
28 1 2.9557 5.4013 -1.2053
29 1 3.3671 5.3726 1.2491
30 1 3.0977 4.9475 3.6636
31 1 2.2784 2.7564 4.4439
32 1 1.7030 -1.1367 5.5579
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000214981729.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:18
Heat of formation + Delta-G solvation = 39.660955 kcal
Electronic energy + Delta-G solvation = -16043.177625 eV
Core-core repulsion = 13582.066682 eV
Total energy + Delta-G solvation = -2461.110943 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-43.22098 -38.21025 -36.11783 -34.95920 -33.37937 -31.82350 -31.06097 -27.85222
-26.58093 -24.29308 -24.07522 -21.97375 -21.15240 -19.36446 -17.88491 -17.45525
-16.75969 -16.57090 -16.09269 -15.40211 -15.01195 -14.61024 -14.45912 -14.00841
-13.89430 -13.47655 -13.28319 -13.14382 -12.92535 -12.72391 -12.36507 -12.11673
-12.02504 -11.79978 -11.77064 -11.29983 -10.97528 -10.90523 -9.81652 -9.17901
-8.23638 -6.61858 0.25267 0.69425 1.21553 1.31340 1.41927 2.01098
2.06497 2.15115 2.48680 3.09465 3.60775 3.99410 4.13803 4.26186
4.35037 4.43584 4.50660 4.63182 4.69002 4.81127 4.90793 4.93885
4.94994 5.04204 5.11199 5.22960 5.27784 5.31865 5.55477 5.72460
5.82618 6.01069 6.10382 6.23262 6.38076 6.78350 7.27174 7.84207
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.025109 B = 0.012319 C = 0.008940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.853844 B = 2272.335654 C = 3131.369300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.030 4.030
3 C 0.126 3.874
4 N -0.475 5.475
5 C -0.088 4.088
6 C -0.038 4.038
7 C 0.035 3.965
8 C -0.246 4.246
9 C -0.042 4.042
10 C -0.346 4.346
11 C 0.247 3.753
12 C -0.457 4.457
13 H 0.105 0.895
14 C 0.068 3.932
15 N -0.794 5.794
16 Si 0.965 3.035
17 H -0.247 1.247
18 H -0.270 1.270
19 H -0.268 1.268
20 N -0.389 5.389
21 H 0.083 0.917
22 H 0.033 0.967
23 H 0.055 0.945
24 H 0.094 0.906
25 H 0.078 0.922
26 H 0.066 0.934
27 H 0.066 0.934
28 H 0.077 0.923
29 H 0.147 0.853
30 H 0.144 0.856
31 H 0.125 0.875
32 H 0.308 0.692
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.413 3.635 -1.307 4.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.069 4.069
3 C -0.127 4.127
4 N -0.191 5.191
5 C -0.220 4.220
6 C -0.096 4.096
7 C -0.075 4.075
8 C -0.267 4.267
9 C -0.063 4.063
10 C -0.367 4.367
11 C 0.145 3.855
12 C -0.487 4.487
13 H 0.123 0.877
14 C -0.156 4.156
15 N -0.417 5.417
16 Si 0.788 3.212
17 H -0.172 1.172
18 H -0.196 1.196
19 H -0.192 1.192
20 N -0.063 5.063
21 H 0.102 0.898
22 H 0.052 0.948
23 H 0.074 0.926
24 H 0.113 0.887
25 H 0.097 0.903
26 H 0.085 0.915
27 H 0.085 0.915
28 H 0.095 0.905
29 H 0.164 0.836
30 H 0.162 0.838
31 H 0.143 0.857
32 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 2.204 2.981 -1.964 4.195
hybrid contribution 0.311 0.209 1.324 1.376
sum 2.516 3.189 -0.640 4.112
Atomic orbital electron populations
1.21654 0.93915 1.02657 1.00776 1.20017 0.96627 0.86618 1.03630
1.23347 1.11836 0.97792 0.79775 1.69554 1.16160 1.05066 1.28315
1.21435 1.14307 0.95870 0.90416 1.19812 1.00536 0.93115 0.96108
1.19917 1.05107 0.87205 0.95277 1.20253 1.16028 0.98966 0.91406
1.21101 0.93815 0.96009 0.95360 1.20629 1.23136 0.95119 0.97778
1.18213 0.92860 0.95261 0.79209 1.19368 1.23234 1.02121 1.03928
0.87711 1.26676 0.99903 0.93765 0.95243 1.69565 1.36113 1.20126
1.15858 0.85422 0.78181 0.78443 0.79165 1.17195 1.19615 1.19230
1.43616 1.43564 1.12695 1.06437 0.89817 0.94816 0.92620 0.88736
0.90321 0.91480 0.91474 0.90461 0.83573 0.83805 0.85748 0.87990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.81 9.38 71.98 0.68 -4.13 16
2 C -0.03 -1.22 5.60 29.85 0.17 -1.05 16
3 C 0.13 5.97 7.21 137.78 0.99 6.96 16
4 N -0.47 -22.35 11.18 -173.16 -1.94 -24.28 16
5 C -0.09 -3.88 7.23 42.50 0.31 -3.58 16
6 C -0.04 -1.24 10.44 71.24 0.74 -0.50 16
7 C 0.04 1.64 6.74 38.73 0.26 1.91 16
8 C -0.25 -10.14 10.13 22.76 0.23 -9.91 16
9 C -0.04 -1.70 10.08 22.41 0.23 -1.47 16
10 C -0.35 -15.81 7.11 22.80 0.16 -15.64 16
11 C 0.25 12.29 5.96 38.77 0.23 12.52 16
12 C -0.46 -22.82 8.07 22.97 0.19 -22.64 16
13 H 0.11 5.36 4.36 -2.91 -0.01 5.35 16
14 C 0.07 3.16 5.39 85.30 0.46 3.62 16
15 N -0.79 -37.09 13.93 21.86 0.30 -36.79 16
16 Si 0.96 38.67 24.52 68.60 1.68 40.36 16
17 H -0.25 -9.21 6.71 99.48 0.67 -8.54 16
18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16
19 H -0.27 -11.77 6.89 99.48 0.68 -11.09 16
20 N -0.39 -19.40 3.01 -329.76 -0.99 -20.40 16
21 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16
22 H 0.03 1.37 7.01 -2.39 -0.02 1.35 16
23 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16
24 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16
25 H 0.08 3.38 5.95 -2.39 -0.01 3.36 16
26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16
29 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16
30 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16
31 H 0.13 5.43 4.81 -2.91 -0.01 5.42 16
32 H 0.31 12.71 8.30 -92.71 -0.77 11.94 16
Total: -1.00 -57.79 262.07 4.77 -53.02
By element:
Atomic # 1 Polarization: 20.93 SS G_CDS: 1.07 Total: 22.00 kcal
Atomic # 6 Polarization: -38.55 SS G_CDS: 4.64 Total: -33.91 kcal
Atomic # 7 Polarization: -78.84 SS G_CDS: -2.62 Total: -81.47 kcal
Atomic # 14 Polarization: 38.67 SS G_CDS: 1.68 Total: 40.36 kcal
Total: -57.79 4.77 -53.02 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214981729.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.683 kcal
(2) G-P(sol) polarization free energy of solvation -57.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.661 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds