Wall clock time and date at job start Mon Mar 30 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46994 * 2 1 4 4 C 1.50701 * 109.46835 * 119.99986 * 2 1 3 5 5 N 1.30823 * 125.53880 * 300.01966 * 4 2 1 6 6 C 1.33673 * 109.76265 * 180.02562 * 5 4 2 7 7 C 1.36235 * 107.82780 * 0.22731 * 6 5 4 8 8 C 1.46886 * 133.91625 * 179.73656 * 7 6 5 9 9 C 1.40306 * 121.00347 * 0.06377 * 8 7 6 10 10 H 1.08002 * 119.99707 * 335.63369 * 9 8 7 11 11 C 1.39786 * 119.99793 * 155.63288 * 9 8 7 12 12 N 1.30954 * 120.00413 * 343.13125 * 11 9 8 13 13 Si 1.86810 * 119.99851 * 163.13926 * 11 9 8 14 14 H 1.48493 * 109.47026 * 59.99539 * 13 11 9 15 15 H 1.48495 * 109.47117 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46495 * 299.99660 * 13 11 9 17 17 C 1.40851 * 117.99622 * 180.02562 * 8 7 6 18 18 C 1.39135 * 119.17293 * 359.97438 * 17 8 7 19 19 C 1.35658 * 121.45763 * 359.64004 * 18 17 8 20 20 N 1.36007 * 125.53552 * 120.02755 * 4 2 1 21 21 H 1.09003 * 109.47225 * 59.99905 * 1 2 3 22 22 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46954 * 300.00401 * 1 2 3 24 24 H 1.08998 * 109.46727 * 239.99928 * 2 1 3 25 25 H 1.09004 * 109.47081 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47211 * 300.00103 * 3 2 1 27 27 H 1.08998 * 109.47644 * 59.99607 * 3 2 1 28 28 H 1.07994 * 126.08851 * 179.97438 * 6 5 4 29 29 H 0.97001 * 119.99642 * 179.97438 * 12 11 9 30 30 H 1.07996 * 120.41629 * 180.02562 * 17 8 7 31 31 H 1.08003 * 119.26567 * 179.97438 * 18 17 8 32 32 H 1.07997 * 119.05579 * 179.90744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7836 -0.3594 2.4660 6 6 2.3843 -1.2077 3.3065 7 6 3.0472 -2.1349 2.5603 8 6 3.8808 -3.2992 2.8875 9 6 4.1345 -3.6545 4.2209 10 1 4.0744 -2.9083 4.9994 11 6 4.4651 -4.9743 4.5418 12 7 4.2226 -5.9364 3.6871 13 14 5.2526 -5.3657 6.1899 14 1 4.3416 -4.9474 7.2855 15 1 5.5033 -6.8263 6.2843 16 1 6.5394 -4.6342 6.3097 17 6 4.4170 -4.0488 1.8224 18 6 4.1399 -3.6631 0.5146 19 6 3.3597 -2.5868 0.2442 20 7 2.8180 -1.8206 1.2370 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 2.3532 -1.1634 4.3851 29 1 4.4524 -6.8521 3.9097 30 1 5.0349 -4.9126 2.0184 31 1 4.5506 -4.2366 -0.3032 32 1 3.1711 -2.3212 -0.7855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214981799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:57 Heat of formation + Delta-G solvation = 56.040511 kcal Electronic energy + Delta-G solvation = -15580.653488 eV Core-core repulsion = 13120.252816 eV Total energy + Delta-G solvation = -2460.400672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31940 -36.20810 -34.60365 -34.17902 -31.25571 -29.55986 -26.88932 -26.80431 -25.34772 -22.23401 -21.94083 -20.79085 -19.13705 -17.21487 -16.36472 -15.39062 -15.06343 -14.56879 -14.23014 -13.92266 -13.56869 -13.10856 -12.64628 -12.56754 -11.94361 -11.84812 -11.66233 -11.39410 -11.07191 -10.92823 -10.76880 -10.54736 -10.41394 -10.25628 -9.98334 -9.65334 -9.11038 -8.73282 -7.90462 -7.11547 -6.39218 -4.52274 2.29830 2.79089 2.92058 2.94155 2.99457 3.68803 3.99717 4.12983 4.29620 5.08491 5.30351 5.32399 5.56069 5.69647 5.86579 5.91978 5.97801 6.17756 6.19395 6.21404 6.35997 6.45883 6.58056 6.59401 6.75037 6.81930 6.89160 7.30960 7.57340 7.73898 7.83791 7.93893 8.31475 8.47523 8.52355 8.71622 9.10448 9.81457 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043900 B = 0.007206 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.657995 B = 3884.456329 C = 4273.732313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 C -0.135 4.135 4 C 0.114 3.886 5 N -0.472 5.472 6 C -0.048 4.048 7 C -0.004 4.004 8 C 0.145 3.855 9 C -0.411 4.411 10 H 0.089 0.911 11 C 0.071 3.929 12 N -0.760 5.760 13 Si 0.921 3.079 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.259 1.259 17 C -0.271 4.271 18 C -0.052 4.052 19 C -0.155 4.155 20 N -0.318 5.318 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.161 0.839 29 H 0.288 0.712 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 3.554 -3.246 4.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 C -0.193 4.193 4 C -0.139 4.139 5 N -0.189 5.189 6 C -0.202 4.202 7 C -0.119 4.119 8 C 0.140 3.860 9 C -0.439 4.439 10 H 0.107 0.893 11 C -0.152 4.152 12 N -0.382 5.382 13 Si 0.744 3.256 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.183 1.183 17 C -0.292 4.292 18 C -0.073 4.073 19 C -0.275 4.275 20 N 0.014 4.986 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.179 0.821 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.343 4.014 -3.243 5.332 hybrid contribution 0.844 -1.191 0.350 1.501 sum -0.499 2.823 -2.893 4.073 Atomic orbital electron populations 1.21753 0.94234 1.01716 1.01653 1.19185 0.95585 0.94885 0.91510 1.21748 1.00828 0.95079 1.01662 1.22606 1.04370 0.91911 0.95013 1.69726 1.23158 1.27238 0.98762 1.21638 1.04517 0.95604 0.98477 1.20885 1.05834 1.02042 0.83152 1.18037 0.86951 0.86735 0.94242 1.19393 1.36361 0.94659 0.93466 0.89274 1.26062 0.93429 0.95769 0.99925 1.69901 1.30850 1.01715 1.35772 0.86135 0.80625 0.78159 0.80712 1.18432 1.19930 1.18325 1.21015 1.11146 1.07147 0.89932 1.20139 0.95711 0.93992 0.97487 1.20251 1.14651 1.01931 0.90624 1.42225 1.30966 1.18498 1.06904 0.92840 0.93048 0.91716 0.91094 0.93077 0.92849 0.91715 0.82146 0.90054 0.85679 0.87488 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.18 37.16 0.34 -1.72 16 2 C 0.01 0.15 3.33 -91.77 -0.31 -0.15 16 3 C -0.14 -2.03 9.18 37.16 0.34 -1.69 16 4 C 0.11 2.53 6.52 -154.26 -1.01 1.52 16 5 N -0.47 -11.06 11.21 -10.27 -0.12 -11.18 16 6 C -0.05 -1.16 11.81 -17.47 -0.21 -1.37 16 7 C 0.00 -0.11 6.80 -82.34 -0.56 -0.67 16 8 C 0.15 3.82 5.74 -104.63 -0.60 3.22 16 9 C -0.41 -10.28 8.99 -38.23 -0.34 -10.62 16 10 H 0.09 2.11 7.90 -52.49 -0.41 1.69 16 11 C 0.07 1.64 5.18 -17.35 -0.09 1.55 16 12 N -0.76 -18.32 10.93 55.54 0.61 -17.71 16 13 Si 0.92 17.19 29.59 -169.99 -5.03 12.16 16 14 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 15 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 16 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 17 C -0.27 -6.88 8.81 -38.26 -0.34 -7.21 16 18 C -0.05 -1.20 9.89 -40.17 -0.40 -1.59 16 19 C -0.16 -3.51 10.69 -16.35 -0.17 -3.69 16 20 N -0.32 -7.71 2.96 -56.53 -0.17 -7.87 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 1.16 7.33 -51.93 -0.38 0.78 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.16 3.53 8.06 -52.49 -0.42 3.11 16 29 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 30 H 0.13 3.22 6.20 -52.49 -0.33 2.89 16 31 H 0.11 2.09 8.06 -52.48 -0.42 1.66 16 32 H 0.12 2.37 7.46 -52.49 -0.39 1.98 16 LS Contribution 274.25 15.07 4.13 4.13 Total: -1.00 -27.92 274.25 -7.94 -35.86 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.03 Total: 7.04 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.34 Total: -22.43 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.32 Total: -36.76 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.92 -7.94 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.896 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds