Wall clock time and date at job start Mon Mar 30 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46994 * 2 1 4 4 C 1.50701 * 109.46835 * 119.99986 * 2 1 3 5 5 N 1.30823 * 125.53880 * 300.01966 * 4 2 1 6 6 C 1.33673 * 109.76265 * 180.02562 * 5 4 2 7 7 C 1.36235 * 107.82780 * 0.22731 * 6 5 4 8 8 C 1.46886 * 133.91625 * 179.73656 * 7 6 5 9 9 C 1.40306 * 121.00347 * 0.06377 * 8 7 6 10 10 H 1.08002 * 119.99707 * 335.63369 * 9 8 7 11 11 C 1.39786 * 119.99793 * 155.63288 * 9 8 7 12 12 N 1.30954 * 120.00413 * 343.13125 * 11 9 8 13 13 Si 1.86810 * 119.99851 * 163.13926 * 11 9 8 14 14 H 1.48493 * 109.47026 * 59.99539 * 13 11 9 15 15 H 1.48495 * 109.47117 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46495 * 299.99660 * 13 11 9 17 17 C 1.40851 * 117.99622 * 180.02562 * 8 7 6 18 18 C 1.39135 * 119.17293 * 359.97438 * 17 8 7 19 19 C 1.35658 * 121.45763 * 359.64004 * 18 17 8 20 20 N 1.36007 * 125.53552 * 120.02755 * 4 2 1 21 21 H 1.09003 * 109.47225 * 59.99905 * 1 2 3 22 22 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46954 * 300.00401 * 1 2 3 24 24 H 1.08998 * 109.46727 * 239.99928 * 2 1 3 25 25 H 1.09004 * 109.47081 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47211 * 300.00103 * 3 2 1 27 27 H 1.08998 * 109.47644 * 59.99607 * 3 2 1 28 28 H 1.07994 * 126.08851 * 179.97438 * 6 5 4 29 29 H 0.97001 * 119.99642 * 179.97438 * 12 11 9 30 30 H 1.07996 * 120.41629 * 180.02562 * 17 8 7 31 31 H 1.08003 * 119.26567 * 179.97438 * 18 17 8 32 32 H 1.07997 * 119.05579 * 179.90744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7836 -0.3594 2.4660 6 6 2.3843 -1.2077 3.3065 7 6 3.0472 -2.1349 2.5603 8 6 3.8808 -3.2992 2.8875 9 6 4.1345 -3.6545 4.2209 10 1 4.0744 -2.9083 4.9994 11 6 4.4651 -4.9743 4.5418 12 7 4.2226 -5.9364 3.6871 13 14 5.2526 -5.3657 6.1899 14 1 4.3416 -4.9474 7.2855 15 1 5.5033 -6.8263 6.2843 16 1 6.5394 -4.6342 6.3097 17 6 4.4170 -4.0488 1.8224 18 6 4.1399 -3.6631 0.5146 19 6 3.3597 -2.5868 0.2442 20 7 2.8180 -1.8206 1.2370 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 2.3532 -1.1634 4.3851 29 1 4.4524 -6.8521 3.9097 30 1 5.0349 -4.9126 2.0184 31 1 4.5506 -4.2366 -0.3032 32 1 3.1711 -2.3212 -0.7855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214981799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:56 Heat of formation + Delta-G solvation = 42.236114 kcal Electronic energy + Delta-G solvation = -15581.252092 eV Core-core repulsion = 13120.252816 eV Total energy + Delta-G solvation = -2460.999276 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.12782 -37.96400 -36.02624 -35.97561 -33.07658 -31.37960 -28.66542 -27.99402 -27.17613 -23.81877 -23.72229 -22.63583 -20.80377 -18.95608 -18.09922 -17.11952 -16.81923 -16.35772 -15.95320 -15.37644 -15.05252 -14.70474 -14.32876 -13.94642 -13.66367 -13.43002 -13.01440 -12.93785 -12.47674 -12.39342 -12.26661 -12.02250 -12.00985 -11.88401 -11.71052 -11.39605 -10.95750 -10.57822 -9.74581 -8.87045 -8.23897 -6.39670 0.49605 0.93830 1.37598 1.47749 1.51960 2.11652 2.26536 2.32101 2.52702 3.41890 3.57552 3.98668 4.08561 4.23630 4.27504 4.43000 4.52147 4.67626 4.82948 4.84172 4.97769 4.98464 4.99654 5.04911 5.13304 5.36394 5.38632 5.50863 5.74378 5.88396 5.99643 6.07118 6.45522 6.63347 6.66962 6.92481 7.26536 8.09685 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043900 B = 0.007206 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.657995 B = 3884.456329 C = 4273.732313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.003 3.997 3 C -0.128 4.128 4 C 0.124 3.876 5 N -0.485 5.485 6 C -0.061 4.061 7 C -0.037 4.037 8 C 0.116 3.884 9 C -0.441 4.441 10 H 0.090 0.910 11 C 0.034 3.966 12 N -0.791 5.791 13 Si 0.995 3.005 14 H -0.255 1.255 15 H -0.262 1.262 16 H -0.257 1.257 17 C -0.298 4.298 18 C -0.060 4.060 19 C -0.154 4.154 20 N -0.336 5.336 21 H 0.093 0.907 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.171 0.829 29 H 0.298 0.702 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 4.196 -4.235 6.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.018 4.018 3 C -0.186 4.186 4 C -0.130 4.130 5 N -0.202 5.202 6 C -0.215 4.215 7 C -0.152 4.152 8 C 0.111 3.889 9 C -0.469 4.469 10 H 0.108 0.892 11 C -0.186 4.186 12 N -0.413 5.413 13 Si 0.814 3.186 14 H -0.179 1.179 15 H -0.186 1.186 16 H -0.181 1.181 17 C -0.320 4.320 18 C -0.081 4.081 19 C -0.273 4.273 20 N -0.004 5.004 21 H 0.111 0.889 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.188 0.812 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.618 4.654 -4.240 6.500 hybrid contribution 0.848 -1.311 0.542 1.653 sum -0.771 3.343 -3.697 5.044 Atomic orbital electron populations 1.21718 0.92538 1.01377 1.03096 1.19553 0.96941 0.95746 0.89522 1.21708 1.00183 0.93671 1.03081 1.23790 1.02119 0.90749 0.96337 1.69760 1.23639 1.27357 0.99413 1.21911 1.04605 0.95718 0.99262 1.21133 1.06884 1.02709 0.84445 1.18411 0.87741 0.87545 0.95216 1.19686 1.37923 0.95863 0.93380 0.89172 1.26960 0.93115 0.94828 1.03688 1.69932 1.31194 1.02434 1.37750 0.85042 0.79408 0.78440 0.75730 1.17901 1.18574 1.18079 1.21041 1.12284 1.07513 0.91196 1.20483 0.95671 0.94444 0.97466 1.20854 1.13353 1.01194 0.91856 1.42543 1.31774 1.19362 1.06692 0.88873 0.94278 0.92816 0.89583 0.94056 0.88926 0.92812 0.81187 0.89085 0.86902 0.84271 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.18 71.98 0.66 -2.90 16 2 C 0.00 0.08 3.33 -11.54 -0.04 0.05 16 3 C -0.13 -3.47 9.18 71.98 0.66 -2.81 16 4 C 0.12 5.40 6.52 137.72 0.90 6.30 16 5 N -0.49 -22.72 11.21 -186.41 -2.09 -24.81 16 6 C -0.06 -3.05 11.81 83.95 0.99 -2.06 16 7 C -0.04 -1.97 6.80 39.98 0.27 -1.70 16 8 C 0.12 6.31 5.74 -19.87 -0.11 6.20 16 9 C -0.44 -22.86 8.99 23.15 0.21 -22.65 16 10 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 11 C 0.03 1.59 5.18 85.20 0.44 2.03 16 12 N -0.79 -38.87 10.93 21.80 0.24 -38.63 16 13 Si 1.00 35.24 29.59 68.60 2.03 37.27 16 14 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 15 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 16 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 17 C -0.30 -15.59 8.81 23.13 0.20 -15.39 16 18 C -0.06 -2.73 9.89 21.89 0.22 -2.51 16 19 C -0.15 -6.79 10.69 83.35 0.89 -5.90 16 20 N -0.34 -16.14 2.96 -332.77 -0.98 -17.12 16 21 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.09 2.48 7.33 -2.39 -0.02 2.47 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.17 7.76 8.06 -2.91 -0.02 7.73 16 29 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 30 H 0.11 6.03 6.20 -2.91 -0.02 6.02 16 31 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 32 H 0.16 5.63 7.46 -2.91 -0.02 5.61 16 Total: -1.00 -61.75 274.25 5.59 -56.16 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 1.11 Total: 28.48 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 5.29 Total: -41.34 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.83 Total: -80.57 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -61.75 5.59 -56.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214981799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.397 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds