Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48503 * 109.47143 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46912 * 119.99821 * 3 2 1 7 7 C 1.39945 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00057 * 161.95592 * 7 2 1 9 9 C 1.41399 * 119.99895 * 341.96369 * 7 2 1 10 10 C 1.40736 * 120.24176 * 155.53962 * 9 7 2 11 11 C 1.37593 * 119.74144 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.25135 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49662 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.87103 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47369 * 59.97253 * 14 13 12 16 16 C 1.52995 * 109.47172 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.46954 * 60.00429 * 16 15 14 18 18 C 1.52995 * 109.47082 * 299.99502 * 17 16 15 19 19 C 1.52995 * 109.47040 * 299.97509 * 14 13 12 20 20 C 1.37630 * 120.25176 * 359.97438 * 13 12 11 21 21 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 22 22 H 1.07992 * 120.12645 * 0.02562 * 10 9 7 23 23 H 1.08000 * 119.87460 * 180.02562 * 11 10 9 24 24 H 1.07996 * 119.74722 * 180.02562 * 12 11 10 25 25 H 1.08998 * 109.47063 * 179.97438 * 14 13 12 26 26 H 1.08998 * 109.47313 * 300.00196 * 15 14 13 27 27 H 1.09006 * 109.46853 * 59.99843 * 15 14 13 28 28 H 1.08996 * 109.47462 * 299.99871 * 16 15 14 29 29 H 1.09010 * 109.47168 * 180.02562 * 16 15 14 30 30 H 1.09003 * 109.46826 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47453 * 60.00247 * 17 16 15 32 32 H 1.08998 * 109.47415 * 300.00146 * 18 17 16 33 33 H 1.09000 * 109.47345 * 179.97438 * 18 17 16 34 34 H 1.09007 * 109.47281 * 299.99740 * 19 14 13 35 35 H 1.08998 * 109.47115 * 60.00126 * 19 14 13 36 36 H 1.08008 * 120.12745 * 180.27751 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0482 -1.2350 -0.2892 9 6 1.3532 -2.4062 0.3802 10 6 1.8248 -3.6501 -0.0792 11 6 1.1794 -4.8058 0.2963 12 6 0.0681 -4.7481 1.1235 13 6 -0.4057 -3.5285 1.5810 14 6 -1.6144 -3.4822 2.4800 15 6 -1.3302 -4.2739 3.7580 16 6 -2.5570 -4.2263 4.6709 17 6 -3.7560 -4.8413 3.9462 18 6 -4.0403 -4.0496 2.6682 19 6 -2.8130 -4.0975 1.7550 20 6 0.2240 -2.3597 1.2183 21 1 -0.4850 0.8400 -0.0004 22 1 2.6899 -3.6972 -0.7238 23 1 1.5398 -5.7615 -0.0547 24 1 -0.4320 -5.6603 1.4135 25 1 -1.8373 -2.4465 2.7362 26 1 -1.1073 -5.3096 3.5018 27 1 -0.4761 -3.8355 4.2745 28 1 -2.7794 -3.1905 4.9271 29 1 -2.3543 -4.7900 5.5816 30 1 -4.6299 -4.8078 4.5968 31 1 -3.5336 -5.8771 3.6901 32 1 -4.2628 -3.0138 2.9244 33 1 -4.8942 -4.4880 2.1517 34 1 -3.0157 -3.5335 0.8445 35 1 -2.5902 -5.1333 1.4989 36 1 -0.1442 -1.4108 1.5796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214989446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -33.872207 kcal Electronic energy + Delta-G solvation = -15833.215363 eV Core-core repulsion = 13472.456127 eV Total energy + Delta-G solvation = -2360.759237 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27864 -38.41559 -35.54722 -33.27527 -31.56248 -31.35372 -29.38094 -27.11602 -23.89219 -23.34854 -22.90237 -21.30287 -20.38864 -18.84168 -17.24086 -16.48301 -16.22717 -15.67080 -15.22854 -14.99964 -14.72290 -14.52957 -13.99601 -13.78855 -13.31995 -13.17046 -13.00305 -12.83261 -12.71482 -12.37283 -12.22539 -11.96669 -11.93356 -11.65010 -11.46650 -11.14750 -11.06365 -10.89527 -10.67181 -9.27975 -9.12611 -8.61832 -6.33733 1.00210 1.15614 1.35761 1.47160 1.54087 2.19982 2.73867 3.71173 3.83540 3.93324 4.03935 4.34074 4.46466 4.47926 4.56612 4.65386 4.68776 4.75153 4.76636 4.83399 4.95154 5.13627 5.15754 5.19116 5.23799 5.30949 5.32146 5.38541 5.42332 5.54699 5.55684 5.67544 5.75632 6.06494 6.13292 6.28641 6.42535 6.73508 6.96064 7.07940 8.34182 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.007286 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.777693 B = 3842.014604 C = 4378.279314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.253 4.253 11 C -0.098 4.098 12 C -0.229 4.229 13 C -0.065 4.065 14 C -0.037 4.037 15 C -0.102 4.102 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.187 4.187 21 H 0.287 0.713 22 H 0.092 0.908 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -5.071 6.784 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.272 4.272 11 C -0.116 4.116 12 C -0.248 4.248 13 C -0.065 4.065 14 C -0.056 4.056 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.206 4.206 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.718 -4.919 6.766 10.728 hybrid contribution 0.694 0.991 -0.496 1.307 sum -6.023 -3.929 6.270 9.541 Atomic orbital electron populations 1.69891 1.08953 1.30403 1.35870 1.26735 0.95487 1.04396 0.91256 0.85295 0.78849 0.75779 0.80023 1.18352 1.19042 1.18590 1.19780 0.98337 0.92765 1.42749 0.91013 1.18003 0.92127 0.93049 0.89468 1.21158 1.04702 0.93436 1.07911 1.20888 0.95984 0.96965 0.97751 1.20506 1.00987 0.96325 1.07003 1.19838 0.96213 0.93068 0.97357 1.20035 0.92353 0.98832 0.94376 1.21505 0.97993 0.99892 0.94574 1.21545 0.94479 1.01175 0.98088 1.21513 0.98018 0.99369 0.96125 1.21549 0.96778 1.00593 0.96346 1.21495 0.94399 1.00434 0.97630 1.21174 1.00258 0.96655 1.02556 0.90291 0.88968 0.86371 0.86742 0.93396 0.91627 0.93629 0.92519 0.90504 0.90348 0.91547 0.92596 0.90764 0.94339 0.91705 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.81 10.97 21.83 0.24 -44.57 16 2 C 0.04 1.88 5.14 85.26 0.44 2.32 16 3 Si 0.98 39.63 29.60 68.60 2.03 41.66 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.51 -28.71 9.05 23.46 0.21 -28.49 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.30 5.58 -21.29 -0.12 4.18 16 10 C -0.25 -13.10 9.80 22.73 0.22 -12.88 16 11 C -0.10 -4.45 10.02 22.22 0.22 -4.23 16 12 C -0.23 -10.05 8.72 22.46 0.20 -9.85 16 13 C -0.06 -3.01 4.77 -19.92 -0.10 -3.10 16 14 C -0.04 -1.41 2.36 -11.54 -0.03 -1.44 16 15 C -0.10 -3.18 5.01 30.59 0.15 -3.03 16 16 C -0.12 -2.77 5.92 30.59 0.18 -2.59 16 17 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 18 C -0.12 -2.89 5.92 30.61 0.18 -2.71 16 19 C -0.10 -3.34 5.02 30.61 0.15 -3.18 16 20 C -0.19 -10.22 8.31 22.73 0.19 -10.03 16 21 H 0.29 14.09 8.30 -92.71 -0.77 13.33 16 22 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 23 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 24 H 0.11 4.31 7.07 -2.91 -0.02 4.29 16 25 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 26 H 0.07 1.97 7.37 -2.39 -0.02 1.96 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 2.04 7.37 -2.39 -0.02 2.02 16 36 H 0.10 5.52 6.05 -2.91 -0.02 5.50 16 Total: -1.00 -60.63 286.62 5.39 -55.23 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.03 Total: 24.93 kcal Atomic # 6 Polarization: -79.34 SS G_CDS: 2.09 Total: -77.25 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.24 Total: -44.57 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -60.63 5.39 -55.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214989446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.359 kcal (2) G-P(sol) polarization free energy of solvation -60.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds