Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 N 1.46491 * 109.47240 * 119.99571 * 2 1 3 5 5 N 1.28269 * 124.15058 * 299.98152 * 4 2 1 6 6 C 1.32325 * 112.89982 * 180.02562 * 5 4 2 7 7 C 1.40819 * 135.18083 * 180.02562 * 6 5 4 8 8 C 1.36190 * 119.66243 * 180.02562 * 7 6 5 9 9 C 1.39079 * 121.80117 * 359.97438 * 8 7 6 10 10 C 1.37806 * 121.26670 * 359.97438 * 9 8 7 11 11 C 1.38977 * 119.37249 * 0.02562 * 10 9 8 12 12 C 1.37417 * 124.14858 * 120.01602 * 4 2 1 13 13 C 1.39039 * 127.45342 * 359.97438 * 12 4 2 14 14 H 1.07994 * 120.00331 * 322.19194 * 13 12 4 15 15 C 1.40373 * 119.99326 * 142.19644 * 13 12 4 16 16 N 1.30686 * 119.99465 * 156.61172 * 15 13 12 17 17 Si 1.86791 * 120.00438 * 336.60995 * 15 13 12 18 18 H 1.48504 * 109.47043 * 95.42361 * 17 15 13 19 19 H 1.48499 * 109.47129 * 215.42604 * 17 15 13 20 20 H 1.48505 * 109.47209 * 335.42467 * 17 15 13 21 21 H 1.08990 * 109.47457 * 300.00211 * 1 2 3 22 22 H 1.09007 * 109.46921 * 60.00309 * 1 2 3 23 23 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47290 * 240.00143 * 2 1 3 25 25 H 1.08996 * 109.47002 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47211 * 299.99789 * 3 2 1 27 27 H 1.09004 * 109.47389 * 59.99781 * 3 2 1 28 28 H 1.07999 * 120.17148 * 0.02718 * 7 6 5 29 29 H 1.07993 * 119.10117 * 180.28016 * 8 7 6 30 30 H 1.07999 * 119.36973 * 180.02562 * 9 8 7 31 31 H 1.07999 * 120.31533 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99832 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 7 1.7582 -0.3220 2.3969 6 6 2.3130 -1.1055 3.3076 7 6 2.3371 -1.1394 4.7152 8 6 3.0325 -2.1209 5.3539 9 6 3.7267 -3.1017 4.6537 10 6 3.7402 -3.1227 3.2758 11 6 3.0472 -2.1448 2.5724 12 6 2.8118 -1.8121 1.1695 13 6 3.2874 -2.4849 0.0495 14 1 2.6602 -2.5916 -0.8232 15 6 4.5828 -3.0256 0.0532 16 7 4.8809 -4.0129 -0.7495 17 14 5.8803 -2.3342 1.2054 18 1 5.9280 -3.1513 2.4445 19 1 7.2058 -2.3706 0.5369 20 1 5.5385 -0.9309 1.5507 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.8068 -0.3910 5.2853 29 1 3.0411 -2.1409 6.4336 30 1 4.2649 -3.8620 5.2002 31 1 4.2841 -3.8919 2.7477 32 1 5.7760 -4.3868 -0.7467 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219907291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = 75.835911 kcal Electronic energy + Delta-G solvation = -16004.124840 eV Core-core repulsion = 13544.582561 eV Total energy + Delta-G solvation = -2459.542279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50648 -36.63568 -34.07823 -34.01856 -30.99278 -28.90089 -28.69661 -26.88210 -25.22608 -23.06537 -21.44757 -20.00173 -18.95829 -17.59902 -16.10671 -15.82561 -15.03702 -14.40014 -14.02794 -13.84626 -13.30278 -13.01557 -12.95061 -12.52341 -12.02508 -11.85720 -11.74223 -11.28639 -11.24737 -11.06466 -10.72530 -10.53113 -10.39581 -10.28539 -9.88485 -9.60443 -8.64175 -8.52065 -7.41832 -7.23195 -6.67486 -4.60739 1.94616 2.88872 2.98903 3.11278 3.23362 3.66667 3.73304 3.88296 4.61102 5.09546 5.13292 5.45342 5.52780 5.67316 5.86230 5.93424 5.96391 6.05273 6.12967 6.16758 6.33264 6.51687 6.55601 6.58552 6.68368 6.81173 6.89095 7.33357 7.42868 7.59634 7.71719 7.89207 8.01032 8.23675 8.32483 8.63272 9.73863 9.78607 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.015595 C = 0.009648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.674719 B = 1794.959297 C = 2901.607825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.153 4.153 4 N -0.316 5.316 5 N -0.396 5.396 6 C 0.104 3.896 7 C -0.148 4.148 8 C -0.077 4.077 9 C -0.243 4.243 10 C -0.006 4.006 11 C -0.268 4.268 12 C 0.225 3.775 13 C -0.440 4.440 14 H 0.101 0.899 15 C 0.107 3.893 16 N -0.781 5.781 17 Si 0.890 3.110 18 H -0.241 1.241 19 H -0.284 1.284 20 H -0.252 1.252 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 3.972 0.855 4.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 C -0.211 4.211 4 N -0.099 5.099 5 N -0.225 5.225 6 C -0.047 4.047 7 C -0.170 4.170 8 C -0.099 4.099 9 C -0.264 4.264 10 C -0.026 4.026 11 C -0.277 4.277 12 C 0.100 3.900 13 C -0.475 4.475 14 H 0.119 0.881 15 C -0.118 4.118 16 N -0.405 5.405 17 Si 0.714 3.286 18 H -0.165 1.165 19 H -0.210 1.210 20 H -0.175 1.175 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.940 4.919 0.483 5.310 hybrid contribution 1.095 -0.614 0.353 1.304 sum -0.846 4.305 0.837 4.466 Atomic orbital electron populations 1.22098 0.94656 1.02412 1.02308 1.21094 0.94391 0.93395 0.85642 1.22037 1.01724 0.95135 1.02233 1.45737 1.41511 1.18557 1.04057 1.72604 1.32669 1.27977 0.89213 1.20240 0.97069 0.93885 0.93543 1.19437 1.06089 1.01510 0.89953 1.20170 0.97081 0.94728 0.97872 1.20250 1.09626 1.03133 0.93398 1.20187 0.93898 0.95022 0.93450 1.20328 1.12238 1.03420 0.91711 1.19906 0.90675 0.86552 0.92852 1.18146 1.00107 1.29038 1.00222 0.88122 1.25929 0.99366 0.91743 0.94785 1.69601 1.22773 1.15701 1.32378 0.86656 0.78175 0.82891 0.80902 1.16526 1.21005 1.17524 0.91495 0.91742 0.92491 0.87920 0.92320 0.91679 0.91549 0.87922 0.88037 0.88259 0.87657 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.35 37.16 0.35 -2.17 16 2 C 0.16 2.92 3.54 -67.94 -0.24 2.68 16 3 C -0.15 -2.49 9.35 37.16 0.35 -2.14 16 4 N -0.32 -7.40 3.10 -50.67 -0.16 -7.56 16 5 N -0.40 -9.75 11.37 33.19 0.38 -9.38 16 6 C 0.10 2.61 7.51 -83.15 -0.62 1.99 16 7 C -0.15 -3.28 10.09 -39.34 -0.40 -3.67 16 8 C -0.08 -1.56 9.89 -40.01 -0.40 -1.96 16 9 C -0.24 -5.22 9.99 -39.43 -0.39 -5.61 16 10 C -0.01 -0.14 7.41 -39.47 -0.29 -0.43 16 11 C -0.27 -6.88 5.22 -102.94 -0.54 -7.41 16 12 C 0.23 5.71 5.82 -81.92 -0.48 5.23 16 13 C -0.44 -11.11 8.97 -38.48 -0.35 -11.45 16 14 H 0.10 2.56 7.69 -52.49 -0.40 2.16 16 15 C 0.11 2.63 5.40 -17.24 -0.09 2.53 16 16 N -0.78 -19.13 13.92 55.57 0.77 -18.36 16 17 Si 0.89 20.11 24.38 -169.99 -4.14 15.96 16 18 H -0.24 -5.31 5.36 56.52 0.30 -5.01 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 21 H 0.07 1.13 8.12 -51.93 -0.42 0.70 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.10 1.87 6.99 -51.93 -0.36 1.51 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 28 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.46 6.02 -52.49 -0.32 2.14 16 32 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -28.25 266.86 -6.35 -34.60 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.12 Total: 3.13 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.10 Total: -22.42 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.99 Total: -35.29 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.14 Total: 15.96 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.25 -6.35 -34.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219907291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.432 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds