Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 N 1.46491 * 109.47240 * 119.99571 * 2 1 3 5 5 N 1.28269 * 124.15058 * 299.98152 * 4 2 1 6 6 C 1.32325 * 112.89982 * 180.02562 * 5 4 2 7 7 C 1.40819 * 135.18083 * 180.02562 * 6 5 4 8 8 C 1.36190 * 119.66243 * 180.02562 * 7 6 5 9 9 C 1.39079 * 121.80117 * 359.97438 * 8 7 6 10 10 C 1.37806 * 121.26670 * 359.97438 * 9 8 7 11 11 C 1.38977 * 119.37249 * 0.02562 * 10 9 8 12 12 C 1.37417 * 124.14858 * 120.01602 * 4 2 1 13 13 C 1.39039 * 127.45342 * 359.97438 * 12 4 2 14 14 H 1.07994 * 120.00331 * 322.19194 * 13 12 4 15 15 C 1.40373 * 119.99326 * 142.19644 * 13 12 4 16 16 N 1.30686 * 119.99465 * 156.61172 * 15 13 12 17 17 Si 1.86791 * 120.00438 * 336.60995 * 15 13 12 18 18 H 1.48504 * 109.47043 * 95.42361 * 17 15 13 19 19 H 1.48499 * 109.47129 * 215.42604 * 17 15 13 20 20 H 1.48505 * 109.47209 * 335.42467 * 17 15 13 21 21 H 1.08990 * 109.47457 * 300.00211 * 1 2 3 22 22 H 1.09007 * 109.46921 * 60.00309 * 1 2 3 23 23 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47290 * 240.00143 * 2 1 3 25 25 H 1.08996 * 109.47002 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47211 * 299.99789 * 3 2 1 27 27 H 1.09004 * 109.47389 * 59.99781 * 3 2 1 28 28 H 1.07999 * 120.17148 * 0.02718 * 7 6 5 29 29 H 1.07993 * 119.10117 * 180.28016 * 8 7 6 30 30 H 1.07999 * 119.36973 * 180.02562 * 9 8 7 31 31 H 1.07999 * 120.31533 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99832 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 7 1.7582 -0.3220 2.3969 6 6 2.3130 -1.1055 3.3076 7 6 2.3371 -1.1394 4.7152 8 6 3.0325 -2.1209 5.3539 9 6 3.7267 -3.1017 4.6537 10 6 3.7402 -3.1227 3.2758 11 6 3.0472 -2.1448 2.5724 12 6 2.8118 -1.8121 1.1695 13 6 3.2874 -2.4849 0.0495 14 1 2.6602 -2.5916 -0.8232 15 6 4.5828 -3.0256 0.0532 16 7 4.8809 -4.0129 -0.7495 17 14 5.8803 -2.3342 1.2054 18 1 5.9280 -3.1513 2.4445 19 1 7.2058 -2.3706 0.5369 20 1 5.5385 -0.9309 1.5507 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.8068 -0.3910 5.2853 29 1 3.0411 -2.1409 6.4336 30 1 4.2649 -3.8620 5.2002 31 1 4.2841 -3.8919 2.7477 32 1 5.7760 -4.3868 -0.7467 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219907291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = 59.505277 kcal Electronic energy + Delta-G solvation = -16004.832989 eV Core-core repulsion = 13544.582561 eV Total energy + Delta-G solvation = -2460.250429 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.30309 -38.32179 -35.88657 -35.58578 -32.80686 -30.66667 -30.41703 -28.19552 -27.05092 -24.76269 -23.19577 -21.66749 -20.72558 -19.41568 -17.86205 -17.50238 -16.76708 -16.12839 -15.79803 -15.32450 -15.00182 -14.79774 -14.65669 -14.05508 -13.77671 -13.23735 -13.15135 -13.00700 -12.90508 -12.63749 -12.37871 -12.10057 -12.04948 -11.95934 -11.64410 -11.45384 -10.49413 -10.34056 -9.18155 -9.07812 -8.50087 -6.48467 0.15818 1.10792 1.20552 1.28518 1.40187 1.83682 2.07148 2.09905 2.75156 3.29861 3.60540 3.96972 4.04293 4.19032 4.26073 4.45718 4.53107 4.62176 4.67384 4.79085 4.80038 4.82790 4.97127 5.06972 5.11069 5.22160 5.28161 5.57862 5.63904 5.86121 5.96792 6.01181 6.20376 6.40712 6.54409 6.82041 7.89612 7.97940 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.015595 C = 0.009648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.674719 B = 1794.959297 C = 2901.607825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 C -0.143 4.143 4 N -0.312 5.312 5 N -0.403 5.403 6 C 0.070 3.930 7 C -0.154 4.154 8 C -0.073 4.073 9 C -0.228 4.228 10 C -0.037 4.037 11 C -0.293 4.293 12 C 0.200 3.800 13 C -0.462 4.462 14 H 0.085 0.915 15 C 0.089 3.911 16 N -0.806 5.806 17 Si 0.930 3.070 18 H -0.232 1.232 19 H -0.263 1.263 20 H -0.286 1.286 21 H 0.058 0.942 22 H 0.106 0.894 23 H 0.041 0.959 24 H 0.101 0.899 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.057 0.943 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 4.506 2.317 5.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 C -0.201 4.201 4 N -0.095 5.095 5 N -0.233 5.233 6 C -0.080 4.080 7 C -0.175 4.175 8 C -0.094 4.094 9 C -0.248 4.248 10 C -0.056 4.056 11 C -0.301 4.301 12 C 0.073 3.927 13 C -0.498 4.498 14 H 0.103 0.897 15 C -0.134 4.134 16 N -0.431 5.431 17 Si 0.753 3.247 18 H -0.155 1.155 19 H -0.188 1.188 20 H -0.211 1.211 21 H 0.077 0.923 22 H 0.125 0.875 23 H 0.060 0.940 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.151 0.849 31 H 0.121 0.879 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.910 5.446 1.938 6.088 hybrid contribution 0.991 -0.717 0.033 1.223 sum -0.919 4.729 1.971 5.205 Atomic orbital electron populations 1.22024 0.92410 1.01932 1.03923 1.21592 0.96273 0.94382 0.84010 1.21991 1.00582 0.93615 1.03924 1.46207 1.40348 1.18058 1.04854 1.72551 1.32766 1.28239 0.89717 1.20847 0.97858 0.94252 0.95062 1.19885 1.06207 1.02546 0.88894 1.20668 0.95312 0.93201 1.00239 1.20778 1.08041 1.03371 0.92606 1.20384 0.95161 0.95305 0.94778 1.20694 1.13051 1.04337 0.92065 1.20066 0.92102 0.87387 0.93100 1.18072 1.00732 1.30910 1.00060 0.89723 1.26257 0.99889 0.91774 0.95514 1.69582 1.23839 1.16341 1.33380 0.86092 0.77733 0.80335 0.80519 1.15541 1.18835 1.21124 0.92325 0.87543 0.93997 0.88108 0.94016 0.87385 0.92350 0.85668 0.83336 0.84934 0.87946 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.35 71.98 0.67 -3.84 16 2 C 0.14 5.13 3.54 44.99 0.16 5.29 16 3 C -0.14 -4.51 9.35 71.98 0.67 -3.84 16 4 N -0.31 -14.87 3.10 -314.21 -0.97 -15.84 16 5 N -0.40 -19.92 11.37 -48.91 -0.56 -20.48 16 6 C 0.07 3.47 7.51 41.99 0.32 3.78 16 7 C -0.15 -6.45 10.09 22.42 0.23 -6.22 16 8 C -0.07 -2.68 9.89 21.99 0.22 -2.47 16 9 C -0.23 -9.06 9.99 22.37 0.22 -8.84 16 10 C -0.04 -1.72 7.41 22.34 0.17 -1.55 16 11 C -0.29 -15.12 5.22 -18.78 -0.10 -15.22 16 12 C 0.20 10.45 5.82 40.50 0.24 10.69 16 13 C -0.46 -24.26 8.97 22.98 0.21 -24.05 16 14 H 0.08 4.55 7.69 -2.91 -0.02 4.53 16 15 C 0.09 4.45 5.40 85.38 0.46 4.91 16 16 N -0.81 -40.12 13.92 21.91 0.30 -39.81 16 17 Si 0.93 41.77 24.38 68.60 1.67 43.44 16 18 H -0.23 -9.93 5.36 99.48 0.53 -9.40 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 22 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.10 3.75 6.99 -2.39 -0.02 3.74 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 28 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 29 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 30 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.10 4.76 6.02 -2.91 -0.02 4.74 16 32 H 0.30 13.44 8.29 -92.71 -0.77 12.67 16 Total: -1.00 -61.94 266.86 4.84 -57.10 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.94 Total: 16.94 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.46 Total: -41.35 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.22 Total: -76.13 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.67 Total: 43.44 kcal Total: -61.94 4.84 -57.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219907291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.603 kcal (2) G-P(sol) polarization free energy of solvation -61.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds