Wall clock time and date at job start Mon Mar 30 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46708 * 2 1 4 4 C 1.46500 * 119.99844 * 269.99473 * 3 2 1 5 5 C 1.50696 * 109.47548 * 270.00051 * 4 3 2 6 6 H 1.08001 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00206 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00055 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 59.99967 * 9 7 5 11 11 H 1.48501 * 109.47464 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46959 * 300.00134 * 9 7 5 13 13 C 1.39707 * 119.99911 * 90.00132 * 3 2 1 14 14 C 1.39034 * 119.99676 * 179.97438 * 13 3 2 15 15 C 1.38215 * 120.22835 * 180.02562 * 14 13 3 16 16 C 1.38015 * 120.23098 * 359.74292 * 15 14 13 17 17 C 1.39639 * 119.99722 * 0.51650 * 16 15 14 18 18 C 1.43205 * 120.11260 * 179.76515 * 17 16 15 19 19 N 5.91693 * 92.90966 * 81.71923 * 2 1 3 20 20 C 1.38619 * 120.00066 * 359.97438 * 13 3 2 21 21 H 1.09004 * 109.46914 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47156 * 299.99915 * 1 2 3 23 23 H 1.09004 * 109.47192 * 60.00557 * 1 2 3 24 24 H 1.08996 * 109.47156 * 240.00085 * 2 1 3 25 25 H 1.09003 * 109.47053 * 119.99978 * 2 1 3 26 26 H 1.08995 * 109.46963 * 30.00659 * 4 3 2 27 27 H 1.09010 * 109.46429 * 150.00257 * 4 3 2 28 28 H 0.96992 * 120.00050 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.88643 * 0.02562 * 14 13 3 30 30 H 1.07999 * 119.88420 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.00123 * 180.27689 * 16 15 14 32 32 H 1.07997 * 120.11639 * 359.97438 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9131 2.0958 -3.4175 10 1 6.1403 0.6390 -3.5947 11 1 6.1607 2.7958 -4.7035 12 1 6.8409 2.6193 -2.3829 13 6 2.2511 2.0398 1.2099 14 6 2.7149 3.3505 1.2099 15 6 2.9474 4.0064 2.4040 16 6 2.7156 3.3667 3.6048 17 6 2.2549 2.0485 3.6160 18 6 2.0184 1.3807 4.8605 19 7 1.8304 0.8511 5.8477 20 6 2.0196 1.3865 2.4104 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0283 27 1 2.0954 3.1411 -1.1383 28 1 3.6750 3.5161 -4.4440 29 1 2.8942 3.8578 0.2735 30 1 3.3073 5.0247 2.3975 31 1 2.8942 3.8843 4.5357 32 1 1.6589 0.3686 2.4126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221537804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:25 Heat of formation + Delta-G solvation = 54.091798 kcal Electronic energy + Delta-G solvation = -15195.181641 eV Core-core repulsion = 12734.696466 eV Total energy + Delta-G solvation = -2460.485175 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30035 -36.76112 -35.61259 -32.94876 -31.35926 -30.45738 -29.16152 -26.38923 -23.94166 -22.81827 -22.27069 -20.32300 -18.03170 -16.49929 -16.07496 -15.52145 -15.05133 -14.46503 -14.04242 -13.92102 -13.62293 -13.12096 -12.94785 -12.71997 -12.45224 -12.12300 -11.91284 -11.67706 -11.42611 -11.11981 -11.01451 -10.85780 -10.63391 -10.39937 -10.05869 -9.89357 -9.09677 -8.57625 -8.52352 -6.67355 -6.11849 -4.24790 1.23501 1.99425 2.85478 3.24109 3.29253 3.31303 3.34132 3.89472 4.23036 4.33678 4.38986 5.15224 5.22875 5.40681 5.48892 5.67969 5.73437 5.75587 5.89385 6.03482 6.14287 6.18938 6.29206 6.53456 6.68088 6.75240 6.85881 7.04048 7.22022 7.24961 7.67810 7.73537 8.05880 8.12719 8.30698 8.83747 9.42689 10.88733 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.007105 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.249829 B = 3940.046419 C = 4422.019940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.606 5.606 4 C 0.249 3.751 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.238 3.762 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.151 4.151 17 C 0.003 3.997 18 C 0.270 3.730 19 N -0.445 5.445 20 C -0.173 4.173 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -0.667 6.902 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.311 5.311 4 C 0.130 3.870 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.131 3.869 14 C -0.179 4.179 15 C -0.096 4.096 16 C -0.174 4.174 17 C -0.001 4.001 18 C -0.044 4.044 19 N -0.121 5.121 20 C -0.199 4.199 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.201 -1.503 8.008 8.754 hybrid contribution 1.092 0.033 -0.874 1.399 sum -2.109 -1.470 7.134 7.583 Atomic orbital electron populations 1.22230 0.97170 1.01153 1.02300 1.21294 0.93183 0.83898 1.02239 1.47264 1.67157 1.12355 1.04275 1.19316 0.96239 0.92845 0.78640 1.21532 0.96998 1.32311 1.06581 0.92186 1.24945 0.97864 0.94855 0.96227 1.69910 1.35753 1.33217 1.14373 0.86585 0.84683 0.78450 0.77912 1.20240 1.21197 1.20065 1.17722 0.91801 0.91467 0.85945 1.21198 1.03325 0.93999 0.99396 1.20767 0.98096 0.99406 0.91350 1.20674 1.05183 0.93254 0.98326 1.15639 1.04838 0.93771 0.85813 1.25973 0.92810 0.92764 0.92871 1.81171 1.10032 1.09359 1.11520 1.20521 1.09143 1.00367 0.89859 0.92532 0.92825 0.92283 0.90380 0.91912 0.94942 0.94540 0.92513 0.84207 0.85780 0.86426 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.12 1.89 5.88 -4.04 -0.02 1.86 16 3 N -0.61 -11.53 2.59 -173.16 -0.45 -11.98 16 4 C 0.25 5.70 4.91 -5.20 -0.03 5.67 16 5 C -0.54 -13.62 9.39 -34.44 -0.32 -13.94 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.36 13.29 55.43 0.74 -23.63 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 C 0.24 4.22 6.55 -83.83 -0.55 3.67 16 14 C -0.16 -2.70 9.20 -39.29 -0.36 -3.06 16 15 C -0.08 -1.10 10.02 -39.67 -0.40 -1.50 16 16 C -0.15 -2.06 9.75 -39.14 -0.38 -2.44 16 17 C 0.00 0.05 5.73 -106.96 -0.61 -0.56 16 18 C 0.27 4.09 15.33 -22.47 -0.34 3.75 16 19 N -0.45 -7.35 18.54 41.83 0.78 -6.58 16 20 C -0.17 -2.70 8.91 -38.95 -0.35 -3.05 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 25 H 0.06 0.90 6.19 -51.93 -0.32 0.58 16 26 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.04 0.88 6.19 -51.92 -0.32 0.55 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 29 H 0.14 2.67 6.12 -52.49 -0.32 2.35 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.78 6.14 -52.49 -0.32 1.46 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -26.90 284.08 -6.54 -33.44 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.78 Total: -0.87 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.08 Total: -10.00 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 1.06 Total: -42.18 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.90 -6.54 -33.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221537804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.531 kcal (2) G-P(sol) polarization free energy of solvation -26.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds