Wall clock time and date at job start Mon Mar 30 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46708 * 2 1 4 4 C 1.46500 * 119.99844 * 269.99473 * 3 2 1 5 5 C 1.50696 * 109.47548 * 270.00051 * 4 3 2 6 6 H 1.08001 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00206 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00055 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 59.99967 * 9 7 5 11 11 H 1.48501 * 109.47464 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46959 * 300.00134 * 9 7 5 13 13 C 1.39707 * 119.99911 * 90.00132 * 3 2 1 14 14 C 1.39034 * 119.99676 * 179.97438 * 13 3 2 15 15 C 1.38215 * 120.22835 * 180.02562 * 14 13 3 16 16 C 1.38015 * 120.23098 * 359.74292 * 15 14 13 17 17 C 1.39639 * 119.99722 * 0.51650 * 16 15 14 18 18 C 1.43205 * 120.11260 * 179.76515 * 17 16 15 19 19 N 5.91693 * 92.90966 * 81.71923 * 2 1 3 20 20 C 1.38619 * 120.00066 * 359.97438 * 13 3 2 21 21 H 1.09004 * 109.46914 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47156 * 299.99915 * 1 2 3 23 23 H 1.09004 * 109.47192 * 60.00557 * 1 2 3 24 24 H 1.08996 * 109.47156 * 240.00085 * 2 1 3 25 25 H 1.09003 * 109.47053 * 119.99978 * 2 1 3 26 26 H 1.08995 * 109.46963 * 30.00659 * 4 3 2 27 27 H 1.09010 * 109.46429 * 150.00257 * 4 3 2 28 28 H 0.96992 * 120.00050 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.88643 * 0.02562 * 14 13 3 30 30 H 1.07999 * 119.88420 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.00123 * 180.27689 * 16 15 14 32 32 H 1.07997 * 120.11639 * 359.97438 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9131 2.0958 -3.4175 10 1 6.1403 0.6390 -3.5947 11 1 6.1607 2.7958 -4.7035 12 1 6.8409 2.6193 -2.3829 13 6 2.2511 2.0398 1.2099 14 6 2.7149 3.3505 1.2099 15 6 2.9474 4.0064 2.4040 16 6 2.7156 3.3667 3.6048 17 6 2.2549 2.0485 3.6160 18 6 2.0184 1.3807 4.8605 19 7 1.8304 0.8511 5.8477 20 6 2.0196 1.3865 2.4104 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0283 27 1 2.0954 3.1411 -1.1383 28 1 3.6750 3.5161 -4.4440 29 1 2.8942 3.8578 0.2735 30 1 3.3073 5.0247 2.3975 31 1 2.8942 3.8843 4.5357 32 1 1.6589 0.3686 2.4126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221537804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:25 Heat of formation + Delta-G solvation = 41.297281 kcal Electronic energy + Delta-G solvation = -15195.736452 eV Core-core repulsion = 12734.696466 eV Total energy + Delta-G solvation = -2461.039987 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59119 -38.08826 -36.92134 -34.84591 -32.67455 -31.66952 -30.72594 -27.99713 -25.46430 -24.05899 -23.80708 -21.60357 -19.38322 -18.45808 -17.41488 -16.95345 -16.51437 -16.00733 -15.38087 -15.14435 -14.91110 -14.65013 -14.25506 -13.96332 -13.86857 -13.61581 -13.31440 -13.04925 -12.97081 -12.68418 -12.56389 -12.34224 -12.10489 -11.91373 -11.72233 -11.47969 -10.58782 -10.55235 -9.76520 -8.34193 -7.85328 -6.30676 -0.00682 0.78426 1.43317 1.44055 1.51899 1.64126 2.09772 2.37824 2.57092 2.99223 3.12957 3.14502 4.02569 4.21531 4.35350 4.45769 4.47394 4.60415 4.65833 4.79344 4.91665 5.01528 5.07719 5.20211 5.25273 5.39570 5.46555 5.56355 5.71333 5.73963 5.98110 6.13712 6.46345 6.52615 6.86620 6.92437 7.41221 8.88514 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.007105 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.249829 B = 3940.046419 C = 4422.019940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.619 5.619 4 C 0.267 3.733 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.925 5.925 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.215 3.785 14 C -0.177 4.177 15 C -0.069 4.069 16 C -0.133 4.133 17 C 0.004 3.996 18 C 0.288 3.712 19 N -0.466 5.466 20 C -0.165 4.165 21 H 0.083 0.917 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.010 0.990 27 H 0.019 0.981 28 H 0.266 0.734 29 H 0.112 0.888 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -0.832 8.642 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.326 5.326 4 C 0.146 3.854 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.565 5.565 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.110 3.890 14 C -0.200 4.200 15 C -0.087 4.087 16 C -0.156 4.156 17 C 0.000 4.000 18 C -0.026 4.026 19 N -0.142 5.142 20 C -0.191 4.191 21 H 0.102 0.898 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.652 -1.677 9.789 10.280 hybrid contribution 0.905 0.121 -1.313 1.599 sum -1.747 -1.556 8.477 8.794 Atomic orbital electron populations 1.22134 0.95479 1.02652 1.01558 1.21437 0.94556 0.82454 1.02404 1.47073 1.68724 1.13355 1.03421 1.18795 0.94454 0.92074 0.80103 1.21778 0.98071 1.31656 1.06450 0.92999 1.25679 1.01445 0.94715 0.96399 1.70014 1.37412 1.34273 1.14792 0.85648 0.80345 0.78385 0.77524 1.19808 1.20837 1.19662 1.17897 0.93179 0.91898 0.86037 1.21181 1.04853 0.94360 0.99622 1.21025 0.96926 1.00473 0.90319 1.21025 1.02738 0.92612 0.99247 1.15676 1.04858 0.94235 0.85228 1.25827 0.92113 0.92167 0.92475 1.81208 1.10776 1.09960 1.12245 1.20568 1.08436 1.00816 0.89283 0.89849 0.92493 0.94011 0.91871 0.89994 0.97225 0.96314 0.92496 0.86969 0.83007 0.83253 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.11 3.64 5.88 86.38 0.51 4.15 16 3 N -0.62 -23.97 2.59 -701.76 -1.82 -25.79 16 4 C 0.27 12.75 4.91 85.63 0.42 13.18 16 5 C -0.54 -28.20 9.39 25.60 0.24 -27.96 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.02 0.91 5.46 84.65 0.46 1.37 16 8 N -0.93 -51.63 13.29 21.45 0.28 -51.34 16 9 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.22 7.55 6.55 38.17 0.25 7.80 16 14 C -0.18 -6.09 9.20 22.46 0.21 -5.88 16 15 C -0.07 -1.80 10.02 22.21 0.22 -1.58 16 16 C -0.13 -3.16 9.75 22.56 0.22 -2.94 16 17 C 0.00 0.11 5.73 -21.38 -0.12 -0.01 16 18 C 0.29 7.89 15.33 88.33 1.35 9.24 16 19 N -0.47 -14.22 18.54 19.00 0.35 -13.87 16 20 C -0.17 -4.86 8.91 22.68 0.20 -4.66 16 21 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 25 H 0.08 2.25 6.19 -2.39 -0.01 2.24 16 26 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 27 H 0.02 0.96 6.19 -2.38 -0.01 0.94 16 28 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.11 4.48 6.12 -2.91 -0.02 4.46 16 30 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.14 3.59 6.14 -2.91 -0.02 3.57 16 Total: -1.00 -57.94 284.08 6.66 -51.28 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.12 Total: 6.59 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.70 Total: -10.86 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -1.18 Total: -91.01 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -57.94 6.66 -51.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221537804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.574 kcal (2) G-P(sol) polarization free energy of solvation -57.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds