Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48497 * 109.47096 * 240.00560 * 3 2 1 5 5 H 1.48500 * 109.47335 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47244 * 120.00177 * 3 2 1 7 7 C 1.37878 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00409 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99861 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46918 * 64.99574 * 12 11 10 14 14 C 1.42900 * 114.00146 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47517 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.33077 * 52.74689 * 15 14 13 17 17 C 1.54477 * 110.37308 * 175.00102 * 15 14 13 18 18 C 1.54507 * 104.06510 * 142.80822 * 17 15 14 19 19 C 1.54483 * 104.06211 * 359.97438 * 18 17 15 20 20 O 1.44428 * 104.89902 * 335.96812 * 19 18 17 21 21 H 0.96996 * 119.99739 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.47213 * 60.00041 * 9 7 2 23 23 H 1.09007 * 109.47055 * 300.00476 * 9 7 2 24 24 H 1.08995 * 109.47872 * 59.99616 * 11 10 9 25 25 H 1.09001 * 109.46807 * 299.99525 * 11 10 9 26 26 H 1.08992 * 109.47033 * 304.99797 * 12 11 10 27 27 H 1.08997 * 109.47360 * 184.99262 * 12 11 10 28 28 H 1.08999 * 109.47037 * 59.99798 * 14 13 12 29 29 H 1.09008 * 109.47052 * 300.00240 * 14 13 12 30 30 H 1.09000 * 110.51486 * 24.16264 * 17 15 14 31 31 H 1.09006 * 110.51115 * 261.45247 * 17 15 14 32 32 H 1.09005 * 110.51421 * 241.35469 * 18 17 15 33 33 H 1.09004 * 110.63217 * 118.69765 * 18 17 15 34 34 H 1.09002 * 110.37322 * 94.85326 * 19 18 17 35 35 H 1.08999 * 110.37312 * 217.08002 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3875 -5.8902 1.2193 14 6 4.4299 -6.8623 1.3209 15 6 5.1502 -6.6999 2.6609 16 1 4.4321 -6.7124 3.4808 17 6 6.1986 -7.8190 2.8471 18 6 7.3777 -7.1149 3.5551 19 6 6.9024 -5.6535 3.7124 20 8 5.9139 -5.4708 2.6753 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.9452 -4.9822 -0.8912 25 1 0.9447 -4.9826 0.8887 26 1 3.3215 -5.7953 -0.8434 27 1 2.1821 -6.9374 -0.0916 28 1 5.1403 -6.7198 0.5065 29 1 4.0012 -7.8626 1.2581 30 1 6.5134 -8.2122 1.8804 31 1 5.7986 -8.6168 3.4730 32 1 8.2754 -7.1600 2.9385 33 1 7.5630 -7.5638 4.5310 34 1 6.4540 -5.5039 4.6946 35 1 7.7357 -4.9658 3.5678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222870247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = -173.360524 kcal Electronic energy + Delta-G solvation = -15961.051528 eV Core-core repulsion = 13151.101609 eV Total energy + Delta-G solvation = -2809.949918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44493 -39.12863 -37.93418 -34.95379 -33.13227 -32.16236 -30.57606 -28.85935 -26.16359 -24.56089 -23.41789 -22.90283 -21.84271 -18.67195 -18.12300 -17.68173 -17.27657 -16.94826 -16.68058 -16.40314 -15.98500 -15.57880 -15.36394 -14.59879 -14.43681 -13.71030 -13.51152 -13.19502 -12.85150 -12.78285 -12.70066 -12.61977 -12.24911 -12.12622 -12.10706 -11.76307 -11.47188 -11.32401 -10.89502 -10.73931 -10.57416 -10.25826 -8.33504 -6.46175 1.38110 1.43932 1.52325 2.34420 2.65083 2.98954 2.99671 3.18246 3.67102 3.84511 4.00123 4.11135 4.17093 4.24510 4.31682 4.43417 4.51180 4.55916 4.57968 4.60240 4.73271 4.82579 4.86046 4.90730 4.94158 5.09705 5.15242 5.18355 5.52848 5.93487 5.94470 6.30171 6.52666 6.80753 7.25661 8.78901 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.004996 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.221009 B = 5603.447850 C = 6428.394220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.049 3.951 12 C 0.073 3.927 13 O -0.409 6.409 14 C 0.061 3.939 15 C 0.065 3.935 16 H 0.069 0.931 17 C -0.138 4.138 18 C -0.147 4.147 19 C 0.028 3.972 20 O -0.405 6.405 21 H 0.272 0.728 22 H -0.008 1.008 23 H -0.017 1.017 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -18.266 5.293 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.075 0.925 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.027 4.027 12 C -0.003 4.003 13 O -0.330 6.330 14 C -0.015 4.015 15 C 0.007 3.993 16 H 0.086 0.914 17 C -0.176 4.176 18 C -0.184 4.184 19 C -0.049 4.049 20 O -0.325 6.325 21 H 0.081 0.919 22 H 0.010 0.990 23 H 0.001 0.999 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.821 -17.815 5.296 22.027 hybrid contribution -0.275 0.641 -0.061 0.700 sum 11.547 -17.175 5.235 21.347 Atomic orbital electron populations 1.70058 1.07698 1.28811 1.50301 1.25970 0.96028 1.03349 0.93699 0.85222 0.78145 0.76602 0.79356 1.18851 1.19423 1.19321 1.21358 0.93960 0.91094 1.52671 0.92530 1.19849 0.88615 0.84716 0.93535 1.87888 1.35493 1.14445 1.95215 1.22687 0.95552 0.83928 1.00571 1.22603 0.93236 0.97686 0.86754 1.88025 1.48270 1.57763 1.38896 1.22791 0.89268 0.92639 0.96823 1.23281 0.93970 0.84949 0.97075 0.91351 1.22909 0.94403 0.97322 1.02924 1.22935 0.98746 0.94064 1.02678 1.23651 0.91653 0.98317 0.91258 1.89347 1.48222 1.37973 1.56949 0.91895 0.99005 0.99889 0.90987 0.93954 0.92762 0.88073 0.92885 0.88712 0.89425 0.87844 0.89835 0.88243 0.92051 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.98 46.46 29.54 68.60 2.03 48.49 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -35.34 9.43 25.60 0.24 -35.10 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.59 5.69 71.23 0.41 13.00 16 10 O -0.41 -22.44 10.29 -144.34 -1.49 -23.93 16 11 C 0.05 2.00 6.32 71.98 0.45 2.46 16 12 C 0.07 2.35 6.32 71.98 0.45 2.80 16 13 O -0.41 -15.04 10.31 -141.19 -1.46 -16.50 16 14 C 0.06 1.58 5.54 71.98 0.40 1.98 16 15 C 0.06 1.63 3.58 31.10 0.11 1.74 16 16 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 17 C -0.14 -2.09 6.63 31.61 0.21 -1.89 16 18 C -0.15 -2.13 7.09 31.61 0.22 -1.91 16 19 C 0.03 0.61 7.62 72.49 0.55 1.16 16 20 O -0.40 -13.25 11.37 -148.95 -1.69 -14.94 16 21 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 22 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 23 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 24 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.09 1.16 7.87 -2.39 -0.02 1.14 16 31 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.41 297.78 2.23 -76.18 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.04 Total: 3.11 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.52 Total: -14.81 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.28 Total: -57.60 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -4.63 Total: -55.37 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -78.41 2.23 -76.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222870247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.180 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds