Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 C 1.50701 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.37936 * 120.03862 * 260.22046 * 4 3 2 6 6 C 1.38707 * 120.64728 * 180.02562 * 5 4 3 7 7 C 1.37814 * 120.36450 * 359.97438 * 6 5 4 8 8 C 1.39478 * 119.65433 * 359.97438 * 7 6 5 9 9 C 1.46669 * 133.97158 * 180.02562 * 8 7 6 10 10 C 1.34299 * 107.04840 * 179.97438 * 9 8 7 11 11 N 1.37000 * 109.94281 * 359.97438 * 10 9 8 12 12 C 1.37203 * 125.09060 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00090 * 152.56531 * 12 11 10 14 14 C 1.38856 * 120.00028 * 332.56219 * 12 11 10 15 15 N 1.31439 * 119.99968 * 166.75889 * 14 12 11 16 16 Si 1.86799 * 120.00058 * 346.76123 * 14 12 11 17 17 H 1.48498 * 109.47221 * 88.39205 * 16 14 12 18 18 H 1.48497 * 109.47221 * 208.39148 * 16 14 12 19 19 H 1.48501 * 109.47055 * 328.39136 * 16 14 12 20 20 C 1.38117 * 109.81771 * 359.76679 * 11 10 9 21 21 H 1.08998 * 109.47463 * 300.00657 * 1 2 3 22 22 H 1.09004 * 109.47184 * 59.99897 * 1 2 3 23 23 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.00896 * 110.99857 * 236.04450 * 2 1 3 25 25 H 1.09004 * 109.47205 * 299.99828 * 3 2 1 26 26 H 1.08994 * 109.47593 * 59.99482 * 3 2 1 27 27 H 1.08007 * 119.67788 * 0.02562 * 5 4 3 28 28 H 1.08000 * 119.81307 * 179.97438 * 6 5 4 29 29 H 1.08006 * 120.17138 * 179.97438 * 7 6 5 30 30 H 1.08003 * 126.47259 * 0.02562 * 9 8 7 31 31 H 1.08006 * 125.02554 * 179.97438 * 10 9 8 32 32 H 0.96997 * 119.99838 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.1980 1.5154 1.1759 6 6 5.5846 1.4814 1.1897 7 6 6.2878 1.2621 0.0249 8 6 5.5979 1.0731 -1.1725 9 6 6.0111 0.8227 -2.5573 10 6 4.8906 0.7246 -3.2910 11 7 3.7916 0.8910 -2.4901 12 6 2.4891 0.8496 -2.9195 13 1 1.7056 0.5496 -2.2395 14 6 2.1784 1.1934 -4.2284 15 7 0.9918 0.9108 -4.7181 16 14 3.4466 2.0575 -5.2934 17 1 4.2848 1.0453 -5.9848 18 1 2.7549 2.8998 -6.3020 19 1 4.3084 2.9145 -4.4400 20 6 4.1909 1.1009 -1.1847 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8305 -0.5261 -0.7813 25 1 1.6459 1.8948 -0.8900 26 1 1.6459 1.8949 0.8899 27 1 3.6582 1.6877 2.0953 28 1 6.1161 1.6277 2.1184 29 1 7.3674 1.2367 0.0392 30 1 7.0250 0.7333 -2.9185 31 1 4.8603 0.5416 -4.3550 32 1 0.7746 1.1513 -5.6323 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229700480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = 65.477849 kcal Electronic energy + Delta-G solvation = -15995.425187 eV Core-core repulsion = 13535.433748 eV Total energy + Delta-G solvation = -2459.991438 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45896 -36.61423 -35.43457 -33.14317 -31.37773 -29.52992 -28.06329 -26.23921 -24.46178 -22.82377 -21.26388 -20.72226 -19.80913 -17.41773 -16.12439 -15.58779 -15.43069 -14.44222 -14.32892 -14.02328 -13.69532 -13.43029 -12.89058 -12.73716 -12.24362 -11.92567 -11.79755 -11.58194 -11.28420 -11.19572 -10.95440 -10.55933 -10.31932 -10.15215 -9.87722 -9.31429 -8.67284 -7.87706 -7.28201 -6.92797 -6.87573 -4.40827 1.93047 2.52274 2.89643 3.05405 3.13783 3.63423 3.83096 4.33229 4.59197 4.79574 5.12905 5.50744 5.62748 5.70682 5.80915 5.95858 6.02793 6.07637 6.15480 6.28563 6.30553 6.37372 6.56719 6.77226 6.86089 6.91591 7.25003 7.38581 7.40580 7.51798 7.58082 7.80934 7.84452 7.97362 8.20217 8.78397 9.11482 10.19616 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.013673 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.464143 B = 2047.296995 C = 3193.792805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.690 5.690 3 C 0.096 3.904 4 C -0.067 4.067 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.081 4.081 8 C -0.121 4.121 9 C -0.246 4.246 10 C 0.002 3.998 11 N -0.298 5.298 12 C -0.353 4.353 13 H 0.126 0.874 14 C 0.068 3.932 15 N -0.844 5.844 16 Si 0.893 3.107 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.250 1.250 20 C 0.072 3.928 21 H 0.056 0.944 22 H 0.027 0.973 23 H 0.061 0.939 24 H 0.349 0.651 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 0.989 4.975 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.033 4.033 4 C -0.070 4.070 5 C -0.135 4.135 6 C -0.185 4.185 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.272 4.272 10 C -0.130 4.130 11 N 0.038 4.962 12 C -0.480 4.480 13 H 0.143 0.857 14 C -0.143 4.143 15 N -0.475 5.475 16 Si 0.720 3.280 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.174 1.174 20 C -0.039 4.039 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.814 0.903 5.317 6.084 hybrid contribution 0.216 0.624 -1.726 1.848 sum 3.031 1.527 3.591 4.941 Atomic orbital electron populations 1.22136 0.88662 1.01265 1.00110 1.60670 1.06988 1.14059 1.50591 1.20893 0.91214 0.90203 1.00939 1.18617 0.93951 1.03622 0.90784 1.20400 0.93758 1.03639 0.95726 1.20549 0.93941 1.06950 0.97069 1.20274 0.98085 1.00436 0.91199 1.18974 0.92139 1.08001 0.93557 1.21176 0.96799 1.17634 0.91563 1.21680 0.86609 1.07918 0.96832 1.40317 1.05109 1.46673 1.04109 1.19609 0.82095 1.47759 0.98544 0.85689 1.25333 0.96955 0.95183 0.96830 1.69661 1.20653 1.40475 1.16664 0.86650 0.80603 0.80641 0.80124 1.19543 1.21245 1.17383 1.18121 0.93009 1.06721 0.86096 0.92504 0.95479 0.92046 0.83085 0.92781 0.91540 0.87137 0.87448 0.87538 0.85276 0.83262 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.68 60.06 0.64 1.11 16 2 N -0.69 -13.44 6.49 -122.42 -0.79 -14.23 16 3 C 0.10 1.91 4.91 -4.97 -0.02 1.89 16 4 C -0.07 -1.43 5.41 -104.48 -0.56 -1.99 16 5 C -0.11 -2.15 9.64 -39.52 -0.38 -2.53 16 6 C -0.17 -2.94 10.03 -39.56 -0.40 -3.34 16 7 C -0.08 -1.54 10.10 -39.27 -0.40 -1.94 16 8 C -0.12 -2.68 6.37 -105.09 -0.67 -3.35 16 9 C -0.25 -5.30 11.09 -37.57 -0.42 -5.72 16 10 C 0.00 0.04 8.28 -16.63 -0.14 -0.10 16 11 N -0.30 -7.34 2.71 -59.74 -0.16 -7.50 16 12 C -0.35 -9.09 8.87 -14.92 -0.13 -9.22 16 13 H 0.13 3.25 4.33 -52.49 -0.23 3.02 16 14 C 0.07 1.74 5.47 -17.49 -0.10 1.64 16 15 N -0.84 -22.22 13.96 55.49 0.77 -21.45 16 16 Si 0.89 20.06 24.70 -169.99 -4.20 15.86 16 17 H -0.27 -5.72 6.51 56.52 0.37 -5.35 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.25 -5.82 6.82 56.52 0.39 -5.43 16 20 C 0.07 1.70 6.70 -83.84 -0.56 1.14 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.35 7.50 7.04 -39.29 -0.28 7.23 16 25 H 0.05 1.20 6.31 -51.93 -0.33 0.88 16 26 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 27 H 0.11 1.79 8.03 -52.48 -0.42 1.37 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 31 H 0.15 3.30 4.52 -52.48 -0.24 3.06 16 32 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -26.96 260.96 -7.21 -34.17 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.63 Total: 11.63 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.14 Total: -22.41 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.18 Total: -43.18 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.20 Total: 15.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.96 -7.21 -34.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.646 kcal (2) G-P(sol) polarization free energy of solvation -26.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds