Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 C 1.50701 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.37936 * 120.03862 * 260.22046 * 4 3 2 6 6 C 1.38707 * 120.64728 * 180.02562 * 5 4 3 7 7 C 1.37814 * 120.36450 * 359.97438 * 6 5 4 8 8 C 1.39478 * 119.65433 * 359.97438 * 7 6 5 9 9 C 1.46669 * 133.97158 * 180.02562 * 8 7 6 10 10 C 1.34299 * 107.04840 * 179.97438 * 9 8 7 11 11 N 1.37000 * 109.94281 * 359.97438 * 10 9 8 12 12 C 1.37203 * 125.09060 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00090 * 152.56531 * 12 11 10 14 14 C 1.38856 * 120.00028 * 332.56219 * 12 11 10 15 15 N 1.31439 * 119.99968 * 166.75889 * 14 12 11 16 16 Si 1.86799 * 120.00058 * 346.76123 * 14 12 11 17 17 H 1.48498 * 109.47221 * 88.39205 * 16 14 12 18 18 H 1.48497 * 109.47221 * 208.39148 * 16 14 12 19 19 H 1.48501 * 109.47055 * 328.39136 * 16 14 12 20 20 C 1.38117 * 109.81771 * 359.76679 * 11 10 9 21 21 H 1.08998 * 109.47463 * 300.00657 * 1 2 3 22 22 H 1.09004 * 109.47184 * 59.99897 * 1 2 3 23 23 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.00896 * 110.99857 * 236.04450 * 2 1 3 25 25 H 1.09004 * 109.47205 * 299.99828 * 3 2 1 26 26 H 1.08994 * 109.47593 * 59.99482 * 3 2 1 27 27 H 1.08007 * 119.67788 * 0.02562 * 5 4 3 28 28 H 1.08000 * 119.81307 * 179.97438 * 6 5 4 29 29 H 1.08006 * 120.17138 * 179.97438 * 7 6 5 30 30 H 1.08003 * 126.47259 * 0.02562 * 9 8 7 31 31 H 1.08006 * 125.02554 * 179.97438 * 10 9 8 32 32 H 0.96997 * 119.99838 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.1980 1.5154 1.1759 6 6 5.5846 1.4814 1.1897 7 6 6.2878 1.2621 0.0249 8 6 5.5979 1.0731 -1.1725 9 6 6.0111 0.8227 -2.5573 10 6 4.8906 0.7246 -3.2910 11 7 3.7916 0.8910 -2.4901 12 6 2.4891 0.8496 -2.9195 13 1 1.7056 0.5496 -2.2395 14 6 2.1784 1.1934 -4.2284 15 7 0.9918 0.9108 -4.7181 16 14 3.4466 2.0575 -5.2934 17 1 4.2848 1.0453 -5.9848 18 1 2.7549 2.8998 -6.3020 19 1 4.3084 2.9145 -4.4400 20 6 4.1909 1.1009 -1.1847 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8305 -0.5261 -0.7813 25 1 1.6459 1.8948 -0.8900 26 1 1.6459 1.8949 0.8899 27 1 3.6582 1.6877 2.0953 28 1 6.1161 1.6277 2.1184 29 1 7.3674 1.2367 0.0392 30 1 7.0250 0.7333 -2.9185 31 1 4.8603 0.5416 -4.3550 32 1 0.7746 1.1513 -5.6323 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229700480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = 48.957701 kcal Electronic energy + Delta-G solvation = -15996.141554 eV Core-core repulsion = 13535.433748 eV Total energy + Delta-G solvation = -2460.707806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.11581 -38.18896 -36.98427 -34.96656 -33.00396 -31.16158 -29.68419 -27.80336 -26.18481 -24.33440 -22.90211 -22.30579 -21.52328 -19.13847 -17.90160 -17.21200 -16.98840 -16.07792 -15.91031 -15.64051 -15.27223 -15.04036 -14.67024 -14.31266 -13.94464 -13.57141 -13.32128 -13.07511 -12.87960 -12.77627 -12.53046 -12.15517 -11.98595 -11.91586 -11.44128 -11.12107 -10.33210 -9.45733 -8.92366 -8.78435 -8.57864 -6.31908 0.36417 0.93156 1.12350 1.25596 1.34266 1.90854 2.01180 2.63956 2.81514 3.14187 3.57269 3.95587 4.05513 4.19208 4.40930 4.46451 4.54095 4.60232 4.68161 4.72493 4.85294 4.92801 4.95046 5.20869 5.25333 5.35695 5.48751 5.78921 5.85133 5.87794 6.01242 6.17489 6.20315 6.30281 6.47265 6.96674 7.31719 8.32817 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.013673 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.464143 B = 2047.296995 C = 3193.792805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.689 5.689 3 C 0.105 3.895 4 C -0.098 4.098 5 C -0.104 4.104 6 C -0.157 4.157 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.237 4.237 10 C -0.024 4.024 11 N -0.322 5.322 12 C -0.361 4.361 13 H 0.111 0.889 14 C 0.026 3.974 15 N -0.884 5.884 16 Si 0.945 3.055 17 H -0.250 1.250 18 H -0.282 1.282 19 H -0.264 1.264 20 C 0.046 3.954 21 H 0.081 0.919 22 H 0.004 0.996 23 H 0.076 0.924 24 H 0.333 0.667 25 H 0.019 0.981 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 1.333 6.907 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.320 5.320 3 C -0.024 4.024 4 C -0.100 4.100 5 C -0.125 4.125 6 C -0.176 4.176 7 C -0.101 4.101 8 C -0.150 4.150 9 C -0.263 4.263 10 C -0.154 4.154 11 N 0.012 4.988 12 C -0.488 4.488 13 H 0.128 0.872 14 C -0.180 4.180 15 N -0.517 5.517 16 Si 0.770 3.230 17 H -0.175 1.175 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.065 4.065 21 H 0.099 0.901 22 H 0.023 0.977 23 H 0.094 0.906 24 H 0.151 0.849 25 H 0.037 0.963 26 H 0.108 0.892 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.910 1.240 7.261 8.852 hybrid contribution -0.333 0.508 -2.071 2.158 sum 4.577 1.748 5.190 7.137 Atomic orbital electron populations 1.22209 0.87254 1.02307 1.00139 1.60774 1.08268 1.13592 1.49333 1.20804 0.91133 0.90171 1.00289 1.18934 0.94533 1.05321 0.91255 1.20860 0.94682 1.01142 0.95766 1.21060 0.93606 1.04576 0.98360 1.20710 0.99880 0.99170 0.90314 1.19429 0.91885 1.08790 0.94930 1.21634 0.97719 1.15564 0.91372 1.21969 0.87018 1.09085 0.97335 1.40343 1.04711 1.48812 1.04949 1.19610 0.82900 1.47690 0.98623 0.87196 1.25932 0.98436 0.95768 0.97871 1.69725 1.22158 1.42491 1.17311 0.85846 0.78721 0.79821 0.78606 1.17514 1.20841 1.18870 1.18683 0.94330 1.07205 0.86246 0.90057 0.97741 0.90562 0.84927 0.96284 0.89150 0.84218 0.83205 0.84274 0.82064 0.82944 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.68 127.69 1.36 2.39 16 2 N -0.69 -27.02 6.49 -541.23 -3.51 -30.53 16 3 C 0.10 4.18 4.91 85.56 0.42 4.60 16 4 C -0.10 -4.06 5.41 -19.77 -0.11 -4.16 16 5 C -0.10 -3.55 9.64 22.31 0.22 -3.34 16 6 C -0.16 -4.84 10.03 22.28 0.22 -4.62 16 7 C -0.08 -2.81 10.10 22.47 0.23 -2.58 16 8 C -0.15 -6.14 6.37 -20.17 -0.13 -6.27 16 9 C -0.24 -9.82 11.09 23.57 0.26 -9.56 16 10 C -0.02 -1.09 8.28 82.99 0.69 -0.40 16 11 N -0.32 -16.18 2.71 -342.91 -0.93 -17.11 16 12 C -0.36 -19.41 8.87 84.00 0.75 -18.66 16 13 H 0.11 6.07 4.33 -2.91 -0.01 6.06 16 14 C 0.03 1.40 5.47 84.90 0.46 1.87 16 15 N -0.88 -48.51 13.96 21.65 0.30 -48.20 16 16 Si 0.94 42.24 24.70 68.60 1.69 43.93 16 17 H -0.25 -10.23 6.51 99.48 0.65 -9.58 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.26 -12.26 6.82 99.48 0.68 -11.58 16 20 C 0.05 2.16 6.70 38.92 0.26 2.42 16 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.33 14.87 7.04 -89.70 -0.63 14.24 16 25 H 0.02 0.89 6.31 -2.38 -0.02 0.87 16 26 H 0.09 3.08 8.00 -2.39 -0.02 3.06 16 27 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 31 H 0.15 6.71 4.52 -2.91 -0.01 6.69 16 32 H 0.29 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -59.63 260.96 2.61 -57.03 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.42 Total: 33.20 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.63 Total: -38.32 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -4.14 Total: -95.84 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.69 Total: 43.93 kcal Total: -59.63 2.61 -57.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.985 kcal (2) G-P(sol) polarization free energy of solvation -59.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds