Wall clock time and date at job start Mon Mar 30 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39646 * 120.00153 * 180.02562 * 2 1 3 5 5 C 1.39324 * 119.77008 * 359.97438 * 4 2 1 6 6 C 1.37710 * 120.18269 * 179.97438 * 5 4 2 7 7 C 1.39279 * 119.79683 * 0.03198 * 6 5 4 8 8 C 1.47684 * 133.65501 * 179.97438 * 7 6 5 9 9 C 1.40880 * 126.92429 * 0.02562 * 8 7 6 10 10 H 1.07993 * 120.00461 * 0.02562 * 9 8 7 11 11 C 1.39703 * 119.99778 * 180.02562 * 9 8 7 12 12 N 1.31075 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99862 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47240 * 60.00151 * 13 11 9 15 15 H 1.48502 * 109.46981 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47105 * 299.99944 * 13 11 9 17 17 C 1.38926 * 106.15215 * 180.02562 * 8 7 6 18 18 N 1.35713 * 109.27878 * 359.97438 * 17 8 7 19 19 H 0.96996 * 124.69729 * 180.02562 * 18 17 8 20 20 C 1.38186 * 110.59777 * 0.02562 * 18 17 8 21 21 C 1.38567 * 119.77160 * 179.72513 * 4 2 1 22 22 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 24 24 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 25 25 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 1.08001 * 119.91121 * 0.02562 * 5 4 2 29 29 H 1.07996 * 120.10416 * 180.02562 * 6 5 4 30 30 H 0.96994 * 120.00016 * 180.02562 * 12 11 9 31 31 H 1.07995 * 125.36432 * 180.02562 * 17 8 7 32 32 H 1.07996 * 120.04421 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1632 -1.2093 -0.0005 5 6 1.4618 -2.4131 -0.0005 6 6 2.1418 -3.6107 -0.0016 7 6 3.5346 -3.6157 -0.0020 8 6 4.5502 -4.6879 -0.0026 9 6 4.3145 -6.0769 -0.0034 10 1 3.3022 -6.4529 -0.0041 11 6 5.3906 -6.9679 -0.0034 12 7 6.6193 -6.5116 -0.0020 13 14 5.0781 -8.8096 -0.0037 14 1 4.3055 -9.1803 -1.2164 15 1 6.3757 -9.5318 -0.0030 16 1 4.3050 -9.1807 1.2085 17 6 5.7848 -4.0508 -0.0022 18 7 5.5955 -2.7070 -0.0020 19 1 6.3082 -2.0490 -0.0020 20 6 4.2468 -2.4060 -0.0017 21 6 3.5489 -1.2038 -0.0063 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8900 0.5139 25 1 2.3792 1.5834 1.0276 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 0.3818 -2.4072 -0.0005 29 1 1.5968 -4.5430 -0.0020 30 1 7.3664 -7.1302 -0.0024 31 1 6.7441 -4.5468 -0.0028 32 1 4.0858 -0.2668 -0.0108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238331355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:56 Heat of formation + Delta-G solvation = 62.226718 kcal Electronic energy + Delta-G solvation = -15295.040657 eV Core-core repulsion = 12834.908239 eV Total energy + Delta-G solvation = -2460.132418 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59439 -37.43058 -34.12397 -33.39389 -30.42919 -29.03818 -27.56026 -27.23465 -24.94085 -23.39701 -21.37876 -19.53477 -19.33547 -17.25229 -15.78203 -15.65531 -15.23724 -14.70473 -14.54181 -14.17405 -12.97333 -12.86257 -12.69495 -12.47643 -12.42723 -12.06162 -11.88444 -11.55200 -11.14094 -10.99468 -10.77423 -10.69976 -10.17838 -9.61716 -9.52392 -9.33138 -8.81006 -7.69486 -6.82567 -6.39231 -6.05472 -3.88722 2.38988 2.83056 3.17730 3.21257 3.25357 3.60288 4.15973 4.32510 4.73123 4.94891 5.27633 5.35676 5.47974 5.71602 5.73570 5.79908 5.84066 5.95044 6.07763 6.43183 6.55395 6.60687 6.69617 7.02415 7.28665 7.32115 7.56151 7.60615 7.89921 7.97075 8.04550 8.25657 8.48214 8.82993 9.15006 9.26183 9.37570 10.58225 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.006358 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.282361 B = 4402.791038 C = 4949.626795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.647 5.647 3 C 0.102 3.898 4 C 0.213 3.787 5 C -0.248 4.248 6 C -0.019 4.019 7 C -0.164 4.164 8 C 0.021 3.979 9 C -0.415 4.415 10 H 0.069 0.931 11 C 0.054 3.946 12 N -0.835 5.835 13 Si 0.915 3.085 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.270 1.270 17 C -0.110 4.110 18 N -0.593 5.593 19 H 0.391 0.609 20 C 0.127 3.873 21 C -0.236 4.236 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.272 0.728 31 H 0.190 0.810 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 9.441 0.001 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.363 5.363 3 C -0.042 4.042 4 C 0.115 3.885 5 C -0.271 4.271 6 C -0.038 4.038 7 C -0.171 4.171 8 C 0.016 3.984 9 C -0.448 4.448 10 H 0.087 0.913 11 C -0.156 4.156 12 N -0.466 5.466 13 Si 0.742 3.258 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.195 1.195 17 C -0.233 4.233 18 N -0.194 5.194 19 H 0.224 0.776 20 C 0.014 3.986 21 C -0.263 4.263 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.206 0.794 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.741 9.408 0.003 11.021 hybrid contribution 0.242 -0.449 -0.002 0.511 sum -5.499 8.958 0.001 10.512 Atomic orbital electron populations 1.21451 0.80541 1.01816 1.00267 1.46014 1.04165 1.03066 1.83081 1.21447 0.97179 0.85346 1.00223 1.17104 0.90059 0.84740 0.96645 1.20117 0.97958 0.91024 1.18029 1.20163 0.92659 0.96176 0.94810 1.19375 0.92624 0.93643 1.11440 1.18051 0.88619 0.91309 1.00400 1.18685 0.93332 0.89691 1.43062 0.91292 1.25625 0.94587 1.00743 0.94612 1.69464 0.99029 1.35816 1.42286 0.86240 0.77920 0.82313 0.79336 1.19542 1.20796 1.19546 1.23253 1.01161 0.78665 1.20234 1.41564 1.03689 1.08010 1.66120 0.77597 1.17895 0.84515 0.93947 1.02260 1.19073 0.91553 0.94790 1.20915 0.94376 0.92680 0.91445 0.94407 0.91644 0.92652 0.87568 0.87280 0.91737 0.79421 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.18 59.85 0.61 1.87 16 2 N -0.65 -10.05 3.41 -187.53 -0.64 -10.68 16 3 C 0.10 1.27 10.18 59.85 0.61 1.88 16 4 C 0.21 4.11 6.55 -83.77 -0.55 3.56 16 5 C -0.25 -4.90 9.19 -39.37 -0.36 -5.26 16 6 C -0.02 -0.42 10.08 -39.39 -0.40 -0.82 16 7 C -0.16 -4.17 6.33 -104.84 -0.66 -4.83 16 8 C 0.02 0.59 6.10 -104.79 -0.64 -0.05 16 9 C -0.41 -11.57 9.42 -38.04 -0.36 -11.93 16 10 H 0.07 1.85 7.84 -52.49 -0.41 1.43 16 11 C 0.05 1.42 5.49 -17.33 -0.10 1.32 16 12 N -0.83 -22.31 10.33 55.54 0.57 -21.74 16 13 Si 0.92 19.98 29.56 -169.99 -5.02 14.95 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 C -0.11 -2.91 10.89 -15.58 -0.17 -3.07 16 18 N -0.59 -13.55 5.99 -9.79 -0.06 -13.61 16 19 H 0.39 7.39 8.96 -40.82 -0.37 7.02 16 20 C 0.13 2.98 7.23 -83.91 -0.61 2.37 16 21 C -0.24 -4.83 9.23 -39.17 -0.36 -5.19 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 24 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.84 6.16 -51.93 -0.32 0.52 16 27 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.11 1.80 6.11 -52.49 -0.32 1.48 16 29 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 31 H 0.19 5.09 5.67 -52.49 -0.30 4.79 16 32 H 0.10 1.82 6.09 -52.49 -0.32 1.50 16 LS Contribution 267.26 15.07 4.03 4.03 Total: -1.00 -30.17 267.26 -7.70 -37.87 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.60 Total: 9.32 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.98 Total: -20.14 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.12 Total: -46.03 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.17 -7.70 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238331355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.101 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds