Wall clock time and date at job start Mon Mar 30 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99880 * 2 1 4 4 C 1.53004 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47058 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.62544 * 59.60536 * 6 5 4 8 8 O 1.43751 * 109.63077 * 299.36921 * 6 5 4 9 9 C 1.44997 * 104.92688 * 215.93713 * 8 6 5 10 10 C 1.54912 * 101.62454 * 35.87444 * 9 8 6 11 11 H 1.08993 * 110.70353 * 83.14849 * 10 9 8 12 12 C 1.50708 * 110.69338 * 206.18054 * 10 9 8 13 13 H 1.07991 * 119.99789 * 357.62633 * 12 10 9 14 14 C 1.37877 * 120.00008 * 177.61944 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 O 1.43368 * 109.63199 * 180.02562 * 6 5 4 21 21 H 1.09010 * 109.47039 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47494 * 299.99634 * 1 2 3 23 23 H 1.09000 * 109.47095 * 60.00118 * 1 2 3 24 24 H 1.08997 * 109.46854 * 60.00116 * 3 2 1 25 25 H 1.08999 * 109.47107 * 300.00248 * 3 2 1 26 26 H 1.09008 * 109.46715 * 59.99938 * 4 3 2 27 27 H 1.09005 * 109.46681 * 300.00513 * 4 3 2 28 28 H 1.09004 * 109.46966 * 60.00591 * 5 4 3 29 29 H 1.08999 * 109.47214 * 300.00209 * 5 4 3 30 30 H 1.09002 * 109.46809 * 179.69208 * 7 6 5 31 31 H 1.08994 * 109.47863 * 299.69577 * 7 6 5 32 32 H 1.09005 * 109.46700 * 59.69670 * 7 6 5 33 33 H 1.08994 * 110.90117 * 277.84486 * 9 8 6 34 34 H 1.09003 * 111.14191 * 154.00236 * 9 8 6 35 35 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4617 0.0013 7 6 6.1386 1.6933 -1.2408 8 8 6.1110 1.7626 1.1821 9 6 7.3586 2.3974 1.5603 10 6 7.0826 3.8753 1.1870 11 1 6.5365 4.3786 1.9847 12 6 8.3705 4.5984 0.8875 13 1 9.3146 4.0838 0.9880 14 6 8.3434 5.9168 0.4850 15 7 9.4672 6.5476 0.2231 16 14 6.7103 6.8069 0.3116 17 1 6.1961 6.6333 -1.0708 18 1 6.9027 8.2529 0.5901 19 1 5.7338 6.2425 1.2775 20 8 6.2697 3.7698 0.0013 21 1 -0.3634 -1.0278 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.8574 0.6436 -0.8892 27 1 3.8567 0.6439 0.8909 28 1 3.8357 3.1238 0.8896 29 1 3.8363 3.1228 -0.8904 30 1 7.2257 1.6135 -1.2401 31 1 5.7011 0.6951 -1.2315 32 1 5.8138 2.2240 -2.1358 33 1 8.1901 1.9970 0.9803 34 1 7.5446 2.2930 2.6293 35 1 9.4481 7.4753 -0.0597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258490196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:09 Heat of formation + Delta-G solvation = -146.586657 kcal Electronic energy + Delta-G solvation = -16822.755524 eV Core-core repulsion = 14013.966608 eV Total energy + Delta-G solvation = -2808.788916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.69625 -37.99822 -34.57612 -34.01220 -32.55245 -30.44051 -28.28732 -27.17943 -25.41479 -24.77746 -22.11374 -20.96753 -19.84052 -17.09326 -16.63928 -16.23564 -16.01674 -15.69171 -14.97005 -14.77549 -14.30709 -13.59832 -13.31228 -13.03200 -12.59906 -12.43929 -12.13132 -12.01396 -11.76064 -11.61847 -11.50829 -11.20516 -10.91908 -10.73953 -10.65139 -10.42685 -9.80190 -9.74438 -9.68034 -9.15223 -8.73181 -8.48975 -6.21707 -4.32916 3.33980 3.39372 3.48877 3.64424 4.29496 4.40721 4.71759 4.99758 5.02662 5.17103 5.20745 5.30688 5.32610 5.42934 5.46653 5.56949 5.68439 5.86728 5.89525 5.95902 6.03192 6.05163 6.23608 6.31480 6.38855 6.44670 6.60401 6.69848 7.06384 7.09237 7.51012 8.14903 8.29512 8.76672 9.39897 10.88359 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.006465 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.229947 B = 4330.085469 C = 4699.958302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.118 4.118 6 C 0.254 3.746 7 C -0.168 4.168 8 O -0.390 6.390 9 C 0.032 3.968 10 C 0.145 3.855 11 H 0.046 0.954 12 C -0.526 4.526 13 H 0.083 0.917 14 C 0.087 3.913 15 N -0.887 5.887 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.295 1.295 19 H -0.265 1.265 20 O -0.387 6.387 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -9.297 -0.626 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.156 4.156 6 C 0.176 3.824 7 C -0.225 4.225 8 O -0.312 6.312 9 C -0.044 4.044 10 C 0.090 3.910 11 H 0.063 0.937 12 C -0.563 4.563 13 H 0.101 0.899 14 C -0.118 4.118 15 N -0.524 5.524 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.222 1.222 19 H -0.190 1.190 20 O -0.310 6.310 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.970 -9.317 -0.731 16.808 hybrid contribution -0.826 0.832 -0.163 1.184 sum -14.797 -8.486 -0.895 17.081 Atomic orbital electron populations 1.22716 0.81426 1.02496 0.99860 1.87878 1.19389 1.28528 1.95413 1.22619 0.94664 0.84197 1.00047 1.21491 0.91982 0.97623 1.04019 1.21795 0.94064 0.96557 1.03140 1.22991 0.91462 0.81858 0.86098 1.22372 1.02600 0.99882 0.97681 1.89095 1.39272 1.58266 1.44531 1.24354 0.86096 0.93145 1.00763 1.21845 0.91365 0.93021 0.84764 0.93657 1.20906 0.90740 0.96191 1.48478 0.89912 1.25022 0.96839 0.97316 0.92655 1.69912 1.26713 1.11679 1.44058 0.86449 0.83857 0.77238 0.79838 1.19795 1.22162 1.19011 1.89014 1.65091 1.29768 1.47096 0.89819 0.94195 0.94238 0.93353 0.93420 0.90851 0.90264 0.91136 0.90542 0.91740 0.91597 0.91565 0.91332 0.88946 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.10 10.70 -35.23 -0.38 -5.48 16 3 C 0.06 0.76 5.94 37.16 0.22 0.98 16 4 C -0.11 -1.61 5.09 -26.73 -0.14 -1.74 16 5 C -0.12 -1.92 4.87 -26.73 -0.13 -2.05 16 6 C 0.25 4.95 1.15 -26.73 -0.03 4.92 16 7 C -0.17 -2.90 8.82 37.16 0.33 -2.57 16 8 O -0.39 -7.77 10.36 -59.04 -0.61 -8.38 16 9 C 0.03 0.67 7.35 38.17 0.28 0.95 16 10 C 0.14 3.52 2.86 -26.87 -0.08 3.44 16 11 H 0.05 1.12 7.19 -51.93 -0.37 0.74 16 12 C -0.53 -14.77 9.40 -34.44 -0.32 -15.09 16 13 H 0.08 2.44 8.01 -52.49 -0.42 2.02 16 14 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 15 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 16 Si 0.90 22.67 26.46 -169.99 -4.50 18.18 16 17 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 20 O -0.39 -9.25 8.70 -59.04 -0.51 -9.76 16 21 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.00 6.44 -51.92 -0.33 0.67 16 27 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.98 6.45 -51.93 -0.34 0.65 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -30.98 286.45 -5.44 -36.42 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.68 Total: -1.99 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 1.15 Total: -7.34 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.97 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.50 Total: -23.62 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.50 Total: 18.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.98 -5.44 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258490196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.166 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds