Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99488 * 2 1 4 4 C 1.53006 * 109.46817 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.62802 * 306.06093 * 6 5 4 8 8 O 1.43375 * 109.62988 * 66.45196 * 6 5 4 9 9 C 1.44194 * 107.28552 * 120.40061 * 8 6 5 10 10 C 1.54921 * 103.07650 * 21.43549 * 9 8 6 11 11 H 1.08998 * 110.97815 * 82.55024 * 10 9 8 12 12 C 1.50705 * 111.00849 * 206.31651 * 10 9 8 13 13 H 1.08003 * 119.99554 * 353.80805 * 12 10 9 14 14 C 1.37877 * 119.99956 * 173.80788 * 12 10 9 15 15 N 1.31509 * 119.99769 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 119.99800 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47190 * 89.99972 * 16 14 12 18 18 H 1.48503 * 109.46873 * 210.00235 * 16 14 12 19 19 H 1.48501 * 109.47132 * 329.99773 * 16 14 12 20 20 O 1.43745 * 109.50928 * 185.74018 * 6 5 4 21 21 H 1.09005 * 109.46744 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47369 * 299.99858 * 1 2 3 23 23 H 1.09002 * 109.47124 * 60.00187 * 1 2 3 24 24 H 1.08991 * 109.47319 * 59.99989 * 3 2 1 25 25 H 1.09004 * 109.47316 * 299.99625 * 3 2 1 26 26 H 1.09001 * 109.47147 * 59.99999 * 4 3 2 27 27 H 1.09000 * 109.47189 * 300.00343 * 4 3 2 28 28 H 1.08991 * 109.47231 * 59.99989 * 5 4 3 29 29 H 1.09004 * 109.47222 * 299.99735 * 5 4 3 30 30 H 1.09003 * 109.46998 * 179.69134 * 7 6 5 31 31 H 1.08998 * 109.47084 * 299.69169 * 7 6 5 32 32 H 1.09000 * 109.47011 * 59.69322 * 7 6 5 33 33 H 1.08993 * 110.69552 * 139.83178 * 9 8 6 34 34 H 1.08996 * 110.69311 * 263.03795 * 9 8 6 35 35 H 0.96999 * 120.00131 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0013 6 6 5.6829 2.4617 0.0026 7 6 6.1273 1.5754 1.1679 8 8 6.1215 1.8860 -1.2351 9 6 7.0003 2.8406 -1.8640 10 6 7.4615 3.7260 -0.6794 11 1 8.2870 3.2595 -0.1418 12 6 7.8404 5.1061 -1.1518 13 1 7.8644 5.3274 -2.2086 14 6 8.1563 6.0860 -0.2348 15 7 8.4874 7.2901 -0.6471 16 14 8.1154 5.7029 1.5930 17 1 9.4494 5.2154 2.0265 18 1 7.7683 6.9331 2.3489 19 1 7.0960 4.6558 1.8566 20 8 6.2677 3.7678 0.1387 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6885 1.8464 -0.8900 26 1 3.8574 0.6437 -0.8891 27 1 3.8567 0.6439 0.8908 28 1 3.8356 3.1231 0.8912 29 1 3.8364 3.1237 -0.8887 30 1 7.2137 1.4867 1.1631 31 1 5.8033 2.0218 2.1080 32 1 5.6815 0.5863 1.0626 33 1 7.8512 2.3370 -2.3226 34 1 6.4598 3.4344 -2.6011 35 1 8.7093 7.9797 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258490202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = -144.404511 kcal Electronic energy + Delta-G solvation = -16830.674306 eV Core-core repulsion = 14021.980015 eV Total energy + Delta-G solvation = -2808.694291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70446 -37.98408 -34.58153 -34.03050 -32.55842 -30.41225 -28.28725 -27.16353 -25.36501 -24.83953 -22.15078 -21.02954 -19.65744 -17.18365 -16.42609 -16.34451 -16.06460 -15.66981 -14.88957 -14.58549 -14.30162 -13.75944 -13.57249 -12.95348 -12.75528 -12.47725 -12.01356 -11.94243 -11.71544 -11.62003 -11.54679 -11.24858 -10.98261 -10.83878 -10.52858 -10.15867 -9.83406 -9.73197 -9.59507 -9.05848 -8.68456 -8.56893 -6.22359 -4.33425 3.31101 3.36896 3.59978 3.66306 4.32317 4.43300 4.75413 5.01932 5.04697 5.18792 5.21019 5.30495 5.35425 5.44113 5.47750 5.58549 5.70407 5.84483 5.90141 5.95281 6.01902 6.09234 6.23568 6.30586 6.39069 6.43988 6.59248 6.71862 7.03942 7.09316 7.49725 8.12659 8.28167 8.76045 9.39237 10.87594 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041321 B = 0.006243 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.453357 B = 4484.209676 C = 4626.427406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.115 4.115 6 C 0.246 3.754 7 C -0.170 4.170 8 O -0.395 6.395 9 C 0.035 3.965 10 C 0.146 3.854 11 H 0.039 0.961 12 C -0.527 4.527 13 H 0.084 0.916 14 C 0.088 3.912 15 N -0.886 5.886 16 Si 0.867 3.133 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.223 1.223 20 O -0.371 6.371 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 -11.672 2.929 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.168 3.832 7 C -0.227 4.227 8 O -0.317 6.317 9 C -0.041 4.041 10 C 0.091 3.909 11 H 0.057 0.943 12 C -0.563 4.563 13 H 0.102 0.898 14 C -0.118 4.118 15 N -0.522 5.522 16 Si 0.693 3.307 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.146 1.146 20 O -0.293 6.293 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.022 -11.683 3.028 16.345 hybrid contribution -0.053 0.366 0.867 0.943 sum -11.075 -11.317 3.895 16.306 Atomic orbital electron populations 1.22713 0.81419 1.02470 0.99890 1.87872 1.19401 1.28577 1.95423 1.22612 0.94618 0.84158 1.00121 1.21513 0.92056 0.97724 1.03857 1.21716 0.93941 0.96342 1.03303 1.23050 0.91930 0.83564 0.84641 1.22419 1.02161 0.99960 0.98208 1.88720 1.65887 1.42624 1.34447 1.24137 0.92604 0.90132 0.97204 1.21874 0.84725 0.97859 0.86407 0.94314 1.20768 1.47069 0.92966 0.95514 0.89835 1.25007 0.92435 0.94483 0.99864 1.69901 1.44127 1.02779 1.35416 0.87019 0.79603 0.79620 0.84456 1.20813 1.21482 1.14625 1.89637 1.41106 1.28681 1.69830 0.89849 0.94230 0.94169 0.93413 0.93259 0.90379 0.90912 0.90716 0.90857 0.92238 0.91475 0.91423 0.89936 0.91262 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.13 10.70 -35.23 -0.38 -5.50 16 3 C 0.06 0.77 5.94 37.16 0.22 0.99 16 4 C -0.11 -1.61 4.98 -26.73 -0.13 -1.74 16 5 C -0.12 -1.89 4.90 -26.73 -0.13 -2.02 16 6 C 0.25 4.78 1.15 -26.73 -0.03 4.75 16 7 C -0.17 -2.87 8.69 37.16 0.32 -2.54 16 8 O -0.40 -7.90 10.47 -59.04 -0.62 -8.52 16 9 C 0.04 0.74 7.52 38.17 0.29 1.02 16 10 C 0.15 3.51 2.66 -26.87 -0.07 3.44 16 11 H 0.04 0.93 7.74 -51.93 -0.40 0.52 16 12 C -0.53 -14.74 9.43 -34.44 -0.32 -15.06 16 13 H 0.08 2.47 8.03 -52.48 -0.42 2.05 16 14 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 15 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 16 Si 0.87 21.48 27.14 -169.99 -4.61 16.86 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.22 -5.38 5.37 56.52 0.30 -5.07 16 20 O -0.37 -8.74 7.76 -59.04 -0.46 -9.20 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 27 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.99 6.33 -51.93 -0.33 0.67 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -30.84 285.43 -5.61 -36.45 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.77 Total: -1.11 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 1.15 Total: -7.35 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.45 Total: -23.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.61 Total: 16.86 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.84 -5.61 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258490202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.955 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds