Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99488 * 2 1 4 4 C 1.53006 * 109.46817 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.62802 * 306.06093 * 6 5 4 8 8 O 1.43375 * 109.62988 * 66.45196 * 6 5 4 9 9 C 1.44194 * 107.28552 * 120.40061 * 8 6 5 10 10 C 1.54921 * 103.07650 * 21.43549 * 9 8 6 11 11 H 1.08998 * 110.97815 * 82.55024 * 10 9 8 12 12 C 1.50705 * 111.00849 * 206.31651 * 10 9 8 13 13 H 1.08003 * 119.99554 * 353.80805 * 12 10 9 14 14 C 1.37877 * 119.99956 * 173.80788 * 12 10 9 15 15 N 1.31509 * 119.99769 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 119.99800 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47190 * 89.99972 * 16 14 12 18 18 H 1.48503 * 109.46873 * 210.00235 * 16 14 12 19 19 H 1.48501 * 109.47132 * 329.99773 * 16 14 12 20 20 O 1.43745 * 109.50928 * 185.74018 * 6 5 4 21 21 H 1.09005 * 109.46744 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47369 * 299.99858 * 1 2 3 23 23 H 1.09002 * 109.47124 * 60.00187 * 1 2 3 24 24 H 1.08991 * 109.47319 * 59.99989 * 3 2 1 25 25 H 1.09004 * 109.47316 * 299.99625 * 3 2 1 26 26 H 1.09001 * 109.47147 * 59.99999 * 4 3 2 27 27 H 1.09000 * 109.47189 * 300.00343 * 4 3 2 28 28 H 1.08991 * 109.47231 * 59.99989 * 5 4 3 29 29 H 1.09004 * 109.47222 * 299.99735 * 5 4 3 30 30 H 1.09003 * 109.46998 * 179.69134 * 7 6 5 31 31 H 1.08998 * 109.47084 * 299.69169 * 7 6 5 32 32 H 1.09000 * 109.47011 * 59.69322 * 7 6 5 33 33 H 1.08993 * 110.69552 * 139.83178 * 9 8 6 34 34 H 1.08996 * 110.69311 * 263.03795 * 9 8 6 35 35 H 0.96999 * 120.00131 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0013 6 6 5.6829 2.4617 0.0026 7 6 6.1273 1.5754 1.1679 8 8 6.1215 1.8860 -1.2351 9 6 7.0003 2.8406 -1.8640 10 6 7.4615 3.7260 -0.6794 11 1 8.2870 3.2595 -0.1418 12 6 7.8404 5.1061 -1.1518 13 1 7.8644 5.3274 -2.2086 14 6 8.1563 6.0860 -0.2348 15 7 8.4874 7.2901 -0.6471 16 14 8.1154 5.7029 1.5930 17 1 9.4494 5.2154 2.0265 18 1 7.7683 6.9331 2.3489 19 1 7.0960 4.6558 1.8566 20 8 6.2677 3.7678 0.1387 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6885 1.8464 0.8899 25 1 1.6885 1.8464 -0.8900 26 1 3.8574 0.6437 -0.8891 27 1 3.8567 0.6439 0.8908 28 1 3.8356 3.1231 0.8912 29 1 3.8364 3.1237 -0.8887 30 1 7.2137 1.4867 1.1631 31 1 5.8033 2.0218 2.1080 32 1 5.6815 0.5863 1.0626 33 1 7.8512 2.3370 -2.3226 34 1 6.4598 3.4344 -2.6011 35 1 8.7093 7.9797 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258490202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = -165.454469 kcal Electronic energy + Delta-G solvation = -16831.587101 eV Core-core repulsion = 14021.980015 eV Total energy + Delta-G solvation = -2809.607086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33359 -38.91513 -36.12432 -35.57179 -34.59744 -31.89206 -29.95190 -28.13292 -26.83340 -26.31147 -23.35052 -22.85437 -21.10037 -19.24167 -17.94028 -17.55999 -17.10258 -17.07585 -16.42586 -15.99920 -15.51502 -15.37548 -15.11772 -14.70709 -14.33501 -14.09803 -13.41889 -13.21629 -13.08567 -12.98858 -12.77204 -12.69401 -12.55906 -12.13944 -11.96575 -11.76932 -11.72481 -11.41041 -10.83438 -10.75618 -10.60509 -10.26604 -8.41575 -6.57408 1.35533 1.38057 1.65291 2.37749 2.58271 2.82181 2.97951 3.47355 3.88389 3.92395 4.06756 4.12651 4.24917 4.32940 4.41464 4.50096 4.52356 4.54942 4.61255 4.64579 4.75453 4.76371 4.85817 4.93587 5.04904 5.09311 5.21862 5.30436 5.36245 5.51718 6.07956 6.23790 6.42161 6.56699 7.19122 8.71880 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041321 B = 0.006243 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.453357 B = 4484.209676 C = 4626.427406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.063 3.937 4 C -0.104 4.104 5 C -0.111 4.111 6 C 0.231 3.769 7 C -0.167 4.167 8 O -0.393 6.393 9 C 0.042 3.958 10 C 0.147 3.853 11 H 0.046 0.954 12 C -0.536 4.536 13 H 0.050 0.950 14 C 0.033 3.967 15 N -0.932 5.932 16 Si 0.930 3.070 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.211 1.211 20 O -0.392 6.392 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 -13.481 4.467 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.142 4.142 5 C -0.149 4.149 6 C 0.154 3.846 7 C -0.224 4.224 8 O -0.315 6.315 9 C -0.035 4.035 10 C 0.091 3.909 11 H 0.064 0.936 12 C -0.573 4.573 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.570 5.570 16 Si 0.753 3.247 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.133 1.133 20 O -0.315 6.315 21 H 0.117 0.883 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.190 -13.514 4.556 18.761 hybrid contribution 0.241 0.896 0.302 0.976 sum -11.949 -12.618 4.858 18.045 Atomic orbital electron populations 1.22934 0.79525 1.03858 1.00823 1.87824 1.21508 1.28679 1.95613 1.22540 0.93439 0.84385 1.00930 1.21381 0.93300 0.95895 1.03612 1.21683 0.92028 0.97912 1.03278 1.23566 0.93482 0.82353 0.85213 1.22414 1.01993 1.00642 0.97366 1.88719 1.65740 1.42148 1.34879 1.24030 0.93358 0.90031 0.96037 1.21692 0.85343 0.95946 0.87904 0.93624 1.20992 1.46953 0.95149 0.94218 0.93156 1.25881 0.92104 0.94198 1.04570 1.70021 1.45968 1.03986 1.37038 0.86043 0.80269 0.79584 0.78781 1.19735 1.21544 1.13307 1.89535 1.40848 1.31365 1.69713 0.88350 0.93067 0.93449 0.92071 0.93035 0.91651 0.90036 0.89726 0.91966 0.92789 0.90332 0.89133 0.87579 0.92218 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.85 10.70 -148.98 -1.59 -11.44 16 3 C 0.06 1.43 5.94 71.98 0.43 1.86 16 4 C -0.10 -2.69 4.98 30.60 0.15 -2.54 16 5 C -0.11 -3.42 4.90 30.60 0.15 -3.27 16 6 C 0.23 8.47 1.15 30.60 0.04 8.50 16 7 C -0.17 -5.10 8.69 71.98 0.63 -4.47 16 8 O -0.39 -15.02 10.47 -126.22 -1.32 -16.34 16 9 C 0.04 1.70 7.52 72.64 0.55 2.24 16 10 C 0.15 6.92 2.66 30.51 0.08 7.00 16 11 H 0.05 2.11 7.74 -2.39 -0.02 2.09 16 12 C -0.54 -30.51 9.43 25.60 0.24 -30.27 16 13 H 0.05 3.10 8.03 -2.91 -0.02 3.08 16 14 C 0.03 1.94 5.47 84.66 0.46 2.40 16 15 N -0.93 -57.44 13.96 21.45 0.30 -57.14 16 16 Si 0.93 44.12 27.14 68.60 1.86 45.99 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.21 -9.49 5.37 99.48 0.53 -8.96 16 20 O -0.39 -17.91 7.76 -126.22 -0.98 -18.89 16 21 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.06 1.85 7.88 -2.39 -0.02 1.84 16 27 H 0.08 1.96 6.34 -2.39 -0.02 1.94 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.34 6.33 -2.39 -0.02 2.32 16 33 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -65.88 285.43 3.11 -62.77 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.87 Total: 11.96 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.97 Total: -16.91 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.30 Total: -57.14 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -3.90 Total: -46.67 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.86 Total: 45.99 kcal Total: -65.88 3.11 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258490202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.681 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds