Wall clock time and date at job start Mon Mar 30 2020 03:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50698 * 126.50531 * 180.28443 * 4 3 2 6 6 N 1.46494 * 109.47122 * 259.97889 * 5 4 3 7 7 C 1.36942 * 119.99633 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00515 * 0.02562 * 7 6 5 9 9 C 1.38819 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00120 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99877 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47089 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47404 * 119.99999 * 11 9 7 14 14 H 1.48501 * 109.47109 * 240.00352 * 11 9 7 15 15 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 16 16 C 1.39627 * 134.03250 * 180.02562 * 15 4 3 17 17 C 1.36628 * 119.76112 * 179.97438 * 16 15 4 18 18 C 1.38824 * 120.53228 * 359.97438 * 17 16 15 19 19 C 1.37752 * 120.66701 * 359.97438 * 18 17 16 20 20 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 21 21 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 22 22 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 24 24 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 25 25 H 1.09004 * 109.46924 * 19.97616 * 5 4 3 26 26 H 1.08997 * 109.47029 * 139.97245 * 5 4 3 27 27 H 0.96994 * 120.00122 * 359.97438 * 6 5 4 28 28 H 0.96998 * 119.99971 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.11793 * 359.95479 * 16 15 4 30 30 H 1.08008 * 119.73158 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.67281 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.11187 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0139 6 7 5.2674 1.8225 -1.3432 7 6 6.3510 2.6249 -1.5824 8 1 6.8085 3.1708 -0.7707 9 6 6.8621 2.7359 -2.8684 10 7 6.3049 2.0702 -3.8577 11 14 8.3406 3.8299 -3.1946 12 1 8.7767 4.4645 -1.9248 13 1 9.4501 3.0113 -3.7459 14 1 7.9701 4.8842 -4.1725 15 6 3.5946 -0.6945 0.0034 16 6 4.6296 -1.6318 0.0073 17 6 4.3361 -2.9662 0.0038 18 6 3.0168 -3.3981 -0.0031 19 6 1.9804 -2.4907 -0.0060 20 6 2.2561 -1.1270 -0.0040 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 1.8834 2.1355 0.0004 25 1 4.4121 2.6870 0.3654 26 1 5.4984 1.3120 0.6779 27 1 4.8568 1.3319 -2.0723 28 1 6.6622 2.1475 -4.7561 29 1 5.6583 -1.3032 0.0128 30 1 5.1370 -3.6908 0.0064 31 1 2.8006 -4.4563 -0.0054 32 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258691201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:13 Heat of formation + Delta-G solvation = 74.785918 kcal Electronic energy + Delta-G solvation = -15203.032818 eV Core-core repulsion = 12743.445008 eV Total energy + Delta-G solvation = -2459.587810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96791 -36.74589 -34.84018 -32.66633 -30.62440 -30.03598 -28.59023 -26.85263 -24.43092 -22.39119 -22.23971 -20.98173 -19.10640 -17.15201 -16.27746 -16.14855 -15.15942 -15.10844 -14.47860 -13.76108 -13.62480 -13.23527 -13.09407 -12.90860 -12.60792 -12.45274 -11.90682 -11.41683 -11.12344 -11.00527 -10.82039 -10.75117 -10.36689 -9.96893 -9.69696 -9.15551 -8.79432 -7.82806 -7.20024 -6.80196 -5.66494 -2.94667 1.48409 1.96419 3.03523 3.09265 3.48903 3.54340 3.56755 4.27410 4.69841 4.80172 4.97068 5.17227 5.18531 5.27566 5.38565 5.43134 5.64498 5.76114 5.81806 5.99268 6.15271 6.28740 6.33069 6.37323 6.68895 6.75932 6.92928 7.01474 7.15402 7.26262 7.57603 7.63990 7.78533 8.51970 9.63302 10.23848 10.60057 11.56291 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.006501 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.085983 B = 4305.809159 C = 4791.208142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.493 5.493 3 C 0.048 3.952 4 C -0.153 4.153 5 C 0.221 3.779 6 N -0.727 5.727 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.932 5.932 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.293 1.293 15 C -0.093 4.093 16 C -0.053 4.053 17 C -0.158 4.158 18 C -0.103 4.103 19 C -0.139 4.139 20 C 0.094 3.906 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.166 0.834 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.385 0.615 28 H 0.253 0.747 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 -7.715 9.275 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.178 5.178 3 C -0.076 4.076 4 C -0.160 4.160 5 C 0.094 3.906 6 N -0.371 5.371 7 C -0.367 4.367 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.581 5.581 11 Si 0.737 3.263 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.220 1.220 15 C -0.098 4.098 16 C -0.072 4.072 17 C -0.177 4.177 18 C -0.122 4.122 19 C -0.159 4.159 20 C -0.012 4.012 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.183 0.817 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.219 0.781 28 H 0.063 0.937 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.801 -7.541 9.315 16.820 hybrid contribution 0.524 0.455 -0.641 0.945 sum -11.277 -7.087 8.674 15.894 Atomic orbital electron populations 1.21830 0.77838 1.03551 1.02608 1.43694 1.05389 1.04388 1.64317 1.21607 0.90041 0.90663 1.05303 1.20732 0.94327 0.92022 1.08909 1.18968 0.89488 0.93093 0.89099 1.42424 1.35492 1.55552 1.03659 1.19314 1.04993 1.19073 0.93349 0.91104 1.24741 0.99794 1.00786 0.95845 1.69695 1.42809 1.45773 0.99840 0.86130 0.82594 0.79907 0.77663 1.20570 1.21947 1.22001 1.19150 0.91844 0.93259 1.05513 1.20405 0.98626 0.91868 0.96261 1.20567 0.96229 0.95487 1.05419 1.20695 0.92382 0.98366 1.00805 1.19868 0.98947 0.89256 1.07860 1.18267 0.90290 0.88192 1.04428 0.91686 0.90640 0.90214 0.81703 0.95807 0.95636 0.78111 0.93696 0.85738 0.86441 0.86378 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.03 59.85 0.66 1.48 16 2 N -0.49 -7.36 3.18 -121.80 -0.39 -7.75 16 3 C 0.05 0.79 11.20 -16.73 -0.19 0.60 16 4 C -0.15 -2.98 5.68 -102.71 -0.58 -3.56 16 5 C 0.22 4.83 6.79 -5.20 -0.04 4.79 16 6 N -0.73 -19.47 5.59 -61.09 -0.34 -19.82 16 7 C -0.24 -6.81 9.99 -15.05 -0.15 -6.97 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 15 C -0.09 -1.76 6.35 -105.14 -0.67 -2.43 16 16 C -0.05 -0.96 10.05 -39.64 -0.40 -1.36 16 17 C -0.16 -2.39 9.97 -39.95 -0.40 -2.79 16 18 C -0.10 -1.42 10.01 -39.54 -0.40 -1.82 16 19 C -0.14 -1.98 9.97 -39.43 -0.39 -2.38 16 20 C 0.09 1.57 6.81 -83.98 -0.57 1.00 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.39 11.12 7.66 -40.82 -0.31 10.81 16 28 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -33.33 280.81 -8.10 -41.43 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.08 Total: 6.48 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.22 Total: -13.99 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.00 Total: -56.02 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.33 -8.10 -41.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258691201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.215 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds