Wall clock time and date at job start Mon Mar 30 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50698 * 126.50531 * 180.28443 * 4 3 2 6 6 N 1.46494 * 109.47122 * 259.97889 * 5 4 3 7 7 C 1.36942 * 119.99633 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00515 * 0.02562 * 7 6 5 9 9 C 1.38819 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00120 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99877 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47089 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47404 * 119.99999 * 11 9 7 14 14 H 1.48501 * 109.47109 * 240.00352 * 11 9 7 15 15 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 16 16 C 1.39627 * 134.03250 * 180.02562 * 15 4 3 17 17 C 1.36628 * 119.76112 * 179.97438 * 16 15 4 18 18 C 1.38824 * 120.53228 * 359.97438 * 17 16 15 19 19 C 1.37752 * 120.66701 * 359.97438 * 18 17 16 20 20 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 21 21 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 22 22 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 24 24 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 25 25 H 1.09004 * 109.46924 * 19.97616 * 5 4 3 26 26 H 1.08997 * 109.47029 * 139.97245 * 5 4 3 27 27 H 0.96994 * 120.00122 * 359.97438 * 6 5 4 28 28 H 0.96998 * 119.99971 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.11793 * 359.95479 * 16 15 4 30 30 H 1.08008 * 119.73158 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.67281 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.11187 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0139 6 7 5.2674 1.8225 -1.3432 7 6 6.3510 2.6249 -1.5824 8 1 6.8085 3.1708 -0.7707 9 6 6.8621 2.7359 -2.8684 10 7 6.3049 2.0702 -3.8577 11 14 8.3406 3.8299 -3.1946 12 1 8.7767 4.4645 -1.9248 13 1 9.4501 3.0113 -3.7459 14 1 7.9701 4.8842 -4.1725 15 6 3.5946 -0.6945 0.0034 16 6 4.6296 -1.6318 0.0073 17 6 4.3361 -2.9662 0.0038 18 6 3.0168 -3.3981 -0.0031 19 6 1.9804 -2.4907 -0.0060 20 6 2.2561 -1.1270 -0.0040 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 1.8834 2.1355 0.0004 25 1 4.4121 2.6870 0.3654 26 1 5.4984 1.3120 0.6779 27 1 4.8568 1.3319 -2.0723 28 1 6.6622 2.1475 -4.7561 29 1 5.6583 -1.3032 0.0128 30 1 5.1370 -3.6908 0.0064 31 1 2.8006 -4.4563 -0.0054 32 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258691201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:12 Heat of formation + Delta-G solvation = 54.324111 kcal Electronic energy + Delta-G solvation = -15203.920108 eV Core-core repulsion = 12743.445008 eV Total energy + Delta-G solvation = -2460.475101 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17905 -37.91564 -36.70908 -34.27576 -32.46828 -31.16360 -29.92432 -28.29538 -26.03832 -24.21777 -23.49492 -22.18548 -20.48989 -19.18035 -17.58686 -17.33007 -16.62337 -16.29227 -16.12410 -15.32651 -15.05456 -14.83387 -14.74842 -14.34347 -13.70736 -13.43735 -13.24096 -13.09904 -12.80486 -12.66706 -12.35042 -12.11945 -12.04522 -11.82317 -11.60855 -10.96020 -10.43831 -9.04649 -8.97569 -8.45406 -7.91717 -5.21611 0.25957 0.75401 1.47199 1.49325 1.59419 1.74035 1.99252 2.59342 3.03871 3.40071 3.83988 3.91764 4.00628 4.19581 4.31725 4.33654 4.48201 4.52214 4.59102 4.71474 4.75386 4.90052 4.95555 4.99521 5.08845 5.38298 5.49790 5.63346 5.76278 5.90200 5.93642 6.28569 6.33572 6.51237 7.34608 8.10785 8.37325 9.31840 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.006501 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.085983 B = 4305.809159 C = 4791.208142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.488 5.488 3 C 0.067 3.933 4 C -0.203 4.203 5 C 0.227 3.773 6 N -0.738 5.738 7 C -0.244 4.244 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.978 3.022 12 H -0.264 1.264 13 H -0.294 1.294 14 H -0.291 1.291 15 C -0.127 4.127 16 C -0.092 4.092 17 C -0.153 4.153 18 C -0.102 4.102 19 C -0.131 4.131 20 C 0.078 3.922 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.191 0.809 25 H 0.034 0.966 26 H 0.015 0.985 27 H 0.370 0.630 28 H 0.250 0.750 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 -8.401 9.988 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.171 5.171 3 C -0.060 4.060 4 C -0.210 4.210 5 C 0.101 3.899 6 N -0.380 5.380 7 C -0.375 4.375 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.806 3.194 12 H -0.188 1.188 13 H -0.221 1.221 14 H -0.219 1.219 15 C -0.132 4.132 16 C -0.111 4.111 17 C -0.172 4.172 18 C -0.121 4.121 19 C -0.152 4.152 20 C -0.028 4.028 21 H 0.092 0.908 22 H 0.115 0.885 23 H 0.121 0.879 24 H 0.208 0.792 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.202 0.798 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.662 -8.234 10.080 18.869 hybrid contribution 0.992 0.590 -0.790 1.399 sum -12.669 -7.644 9.290 17.471 Atomic orbital electron populations 1.22224 0.74483 1.05908 1.03926 1.43994 1.07245 1.03241 1.62645 1.21922 0.89409 0.92212 1.02420 1.20564 0.94732 0.92311 1.13422 1.18919 0.90409 0.94192 0.86401 1.42643 1.35225 1.54986 1.05152 1.19752 1.05386 1.18727 0.93681 0.90411 1.25630 1.03049 1.02737 0.95666 1.69870 1.44628 1.47758 1.00052 0.85007 0.78677 0.77805 0.77869 1.18846 1.22087 1.21856 1.19420 0.93614 0.93288 1.06857 1.20433 0.97607 0.93537 0.99540 1.20887 0.98094 0.94513 1.03755 1.21162 0.91298 1.00396 0.99272 1.20343 1.00979 0.88075 1.05766 1.18579 0.89588 0.89682 1.04974 0.90781 0.88475 0.87856 0.79198 0.94839 0.96718 0.79830 0.94111 0.88247 0.84421 0.82402 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 11.03 127.77 1.41 2.59 16 2 N -0.49 -13.55 3.18 -539.27 -1.71 -15.26 16 3 C 0.07 2.15 11.20 83.00 0.93 3.08 16 4 C -0.20 -8.14 5.68 -18.62 -0.11 -8.24 16 5 C 0.23 10.35 6.79 85.63 0.58 10.93 16 6 N -0.74 -41.10 5.59 -347.19 -1.94 -43.04 16 7 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 10 N -0.97 -62.53 13.06 21.65 0.28 -62.25 16 11 Si 0.98 47.81 29.55 68.60 2.03 49.83 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 14 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 15 C -0.13 -4.97 6.35 -20.20 -0.13 -5.10 16 16 C -0.09 -3.50 10.05 22.23 0.22 -3.28 16 17 C -0.15 -4.57 9.97 22.03 0.22 -4.35 16 18 C -0.10 -2.52 10.01 22.29 0.22 -2.30 16 19 C -0.13 -3.35 9.97 22.37 0.22 -3.13 16 20 C 0.08 2.50 6.81 39.03 0.27 2.76 16 21 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 22 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 23 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.19 4.91 8.06 -2.91 -0.02 4.89 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.37 22.44 7.66 -92.71 -0.71 21.73 16 28 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.10 4.06 8.06 -2.91 -0.02 4.03 16 30 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -74.41 280.81 4.20 -70.21 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.40 Total: 25.37 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 5.15 Total: -24.86 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -3.37 Total: -120.55 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -74.41 4.20 -70.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258691201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.534 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds