Wall clock time and date at job start Mon Mar 30 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36769 * 119.99895 * 2 1 4 4 H 1.08001 * 120.00096 * 203.16970 * 3 2 1 5 5 C 1.38652 * 120.00155 * 23.16540 * 3 2 1 6 6 N 1.31695 * 120.00081 * 12.86917 * 5 3 2 7 7 Si 1.86800 * 120.00041 * 192.86774 * 5 3 2 8 8 H 1.48496 * 109.47346 * 90.00249 * 7 5 3 9 9 H 1.48496 * 109.47150 * 210.00488 * 7 5 3 10 10 H 1.48506 * 109.47249 * 330.00097 * 7 5 3 11 11 C 1.39634 * 119.99796 * 180.02562 * 2 1 3 12 12 C 1.35170 * 126.58134 * 89.97768 * 11 2 1 13 13 N 1.37093 * 109.72688 * 179.97438 * 12 11 2 14 14 C 1.46500 * 125.01070 * 179.97438 * 13 12 11 15 15 C 1.37753 * 109.98022 * 0.22900 * 13 12 11 16 16 C 1.39143 * 133.33715 * 180.34201 * 15 13 12 17 17 C 1.37771 * 119.78834 * 179.64004 * 16 15 13 18 18 C 1.38810 * 120.65074 * 359.80177 * 17 16 15 19 19 C 1.36676 * 120.50122 * 359.97438 * 18 17 16 20 20 C 1.39523 * 119.78347 * 359.97438 * 19 18 17 21 21 H 1.08994 * 109.47285 * 275.11127 * 1 2 3 22 22 H 1.08997 * 109.46939 * 35.11275 * 1 2 3 23 23 H 1.09006 * 109.46671 * 155.11215 * 1 2 3 24 24 H 0.97001 * 120.00719 * 179.97438 * 6 5 3 25 25 H 1.07996 * 125.13680 * 359.97438 * 12 11 2 26 26 H 1.09002 * 109.47323 * 90.02140 * 14 13 12 27 27 H 1.09012 * 109.46799 * 330.02390 * 14 13 12 28 28 H 1.08997 * 109.47209 * 210.02630 * 14 13 12 29 29 H 1.08002 * 120.10854 * 359.41903 * 16 15 13 30 30 H 1.07997 * 119.67403 * 179.77940 * 17 16 15 31 31 H 1.07997 * 119.74424 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.10333 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1489 1.1845 0.0000 4 1 3.1636 1.2222 -0.3680 5 6 1.5395 2.3368 0.4724 6 7 0.4125 2.2558 1.1489 7 14 2.3170 4.0043 0.1491 8 1 1.7989 4.5525 -1.1300 9 1 1.9785 4.9317 1.2584 10 1 3.7919 3.8543 0.0621 11 6 2.1632 -1.2093 -0.0005 12 6 2.5656 -1.9067 -1.0863 13 7 3.2222 -3.0428 -0.6893 14 6 3.7977 -4.0407 -1.5944 15 6 3.2561 -3.1106 0.6861 16 6 3.7915 -4.0288 1.5841 17 6 3.6677 -3.8130 2.9391 18 6 3.0167 -2.6851 3.4195 19 6 2.4877 -1.7684 2.5548 20 6 2.6028 -1.9669 1.1786 21 1 -0.3633 0.0915 1.0235 22 1 -0.3633 0.8406 -0.5911 23 1 -0.3633 -0.9323 -0.4325 24 1 -0.0137 3.0619 1.4798 25 1 2.3955 -1.6132 -2.1116 26 1 4.8305 -3.7744 -1.8195 27 1 3.2201 -4.0690 -2.5185 28 1 3.7706 -5.0210 -1.1188 29 1 4.2994 -4.9096 1.2200 30 1 4.0808 -4.5287 3.6344 31 1 2.9277 -2.5308 4.4847 32 1 1.9828 -0.8929 2.9356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258790596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:15 Heat of formation + Delta-G solvation = 90.168029 kcal Electronic energy + Delta-G solvation = -15658.601874 eV Core-core repulsion = 13199.681082 eV Total energy + Delta-G solvation = -2458.920792 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52431 -36.46254 -35.44722 -32.09852 -30.34105 -29.75535 -28.00804 -25.93516 -25.44025 -22.66624 -21.92248 -20.66845 -18.96218 -16.95882 -16.06750 -15.79804 -14.94709 -14.80138 -14.52324 -13.66808 -13.33179 -13.22714 -12.93724 -12.58967 -12.32830 -12.18009 -11.70387 -11.08121 -10.88738 -10.83430 -10.66372 -10.53507 -10.29066 -10.06086 -9.86327 -8.80600 -8.55804 -7.51830 -6.84496 -6.73565 -5.71465 -3.21477 1.78182 2.23716 3.34200 3.39846 3.45220 3.47693 3.51688 4.51577 4.60664 5.01096 5.24225 5.36388 5.39695 5.48486 5.55394 5.61389 5.65524 5.77871 6.11464 6.31070 6.39099 6.54836 6.73799 6.85167 7.06781 7.24296 7.35584 7.42891 7.54465 7.77904 7.84646 7.91828 7.97836 8.52702 9.26795 9.99350 10.39526 11.33405 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.008365 C = 0.007431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.930647 B = 3346.447182 C = 3767.072729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.538 5.538 3 C -0.250 4.250 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.141 3.859 12 C -0.004 4.004 13 N -0.494 5.494 14 C 0.089 3.911 15 C 0.097 3.903 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.170 4.170 19 C -0.043 4.043 20 C -0.119 4.119 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.000 1.000 24 H 0.253 0.747 25 H 0.160 0.840 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -11.814 -1.962 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.255 5.255 3 C -0.379 4.379 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.039 3.961 12 C -0.128 4.128 13 N -0.181 5.181 14 C -0.054 4.054 15 C -0.009 4.009 16 C -0.167 4.167 17 C -0.125 4.125 18 C -0.189 4.189 19 C -0.061 4.061 20 C -0.127 4.127 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.177 0.823 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.735 -11.814 -2.166 12.910 hybrid contribution 0.446 0.913 -0.128 1.024 sum 5.181 -10.901 -2.294 12.285 Atomic orbital electron populations 1.20863 0.81293 0.95615 0.99899 1.40848 1.01614 0.98442 1.84600 1.19145 0.98549 0.84545 1.35634 0.91269 1.25026 0.97915 0.98568 0.97877 1.70110 1.19360 1.27288 1.38333 0.86200 0.78826 0.83855 0.77362 1.21417 1.21664 1.20446 1.17760 0.99447 0.89981 0.88894 1.22197 1.02398 0.88703 0.99474 1.43475 1.50467 1.20479 1.03655 1.21739 0.98637 0.91317 0.93678 1.18212 1.02141 0.97621 0.82945 1.19821 1.05497 0.99103 0.92273 1.20617 1.00191 0.97789 0.93924 1.20537 1.03273 0.96124 0.99007 1.20425 0.96264 0.97993 0.91431 1.20278 1.02216 0.95540 0.94674 0.94659 0.93657 0.98130 0.93667 0.82312 0.92188 0.90583 0.90946 0.87433 0.86824 0.86947 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.26 8.97 59.85 0.54 4.80 16 2 N -0.54 -14.23 3.13 -119.05 -0.37 -14.61 16 3 C -0.25 -7.08 9.63 -15.20 -0.15 -7.23 16 4 H 0.07 1.96 7.86 -52.49 -0.41 1.55 16 5 C 0.00 0.13 5.10 -17.46 -0.09 0.04 16 6 N -0.91 -26.49 10.70 55.48 0.59 -25.90 16 7 Si 0.91 22.12 29.57 -169.99 -5.03 17.09 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.14 3.33 5.79 -81.90 -0.47 2.85 16 12 C 0.00 -0.08 11.35 -16.29 -0.18 -0.27 16 13 N -0.49 -8.54 3.19 -121.45 -0.39 -8.92 16 14 C 0.09 1.03 11.02 59.85 0.66 1.69 16 15 C 0.10 1.85 6.80 -83.97 -0.57 1.28 16 16 C -0.15 -2.37 9.95 -39.42 -0.39 -2.76 16 17 C -0.11 -1.66 10.01 -39.54 -0.40 -2.06 16 18 C -0.17 -2.97 9.98 -39.93 -0.40 -3.37 16 19 C -0.04 -0.90 10.05 -39.67 -0.40 -1.30 16 20 C -0.12 -2.64 6.38 -105.02 -0.67 -3.31 16 21 H 0.04 0.96 7.33 -51.93 -0.38 0.58 16 22 H 0.04 1.20 7.34 -51.93 -0.38 0.82 16 23 H 0.00 0.00 8.01 -51.93 -0.42 -0.41 16 24 H 0.25 7.15 8.32 -40.82 -0.34 6.81 16 25 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.12 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 276.44 15.07 4.17 4.17 Total: -1.00 -31.53 276.44 -7.66 -39.18 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.10 Total: -1.38 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.52 Total: -9.63 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.17 Total: -49.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.53 -7.66 -39.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258790596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.353 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds