Wall clock time and date at job start Mon Mar 30 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36769 * 119.99895 * 2 1 4 4 H 1.08001 * 120.00096 * 203.16970 * 3 2 1 5 5 C 1.38652 * 120.00155 * 23.16540 * 3 2 1 6 6 N 1.31695 * 120.00081 * 12.86917 * 5 3 2 7 7 Si 1.86800 * 120.00041 * 192.86774 * 5 3 2 8 8 H 1.48496 * 109.47346 * 90.00249 * 7 5 3 9 9 H 1.48496 * 109.47150 * 210.00488 * 7 5 3 10 10 H 1.48506 * 109.47249 * 330.00097 * 7 5 3 11 11 C 1.39634 * 119.99796 * 180.02562 * 2 1 3 12 12 C 1.35170 * 126.58134 * 89.97768 * 11 2 1 13 13 N 1.37093 * 109.72688 * 179.97438 * 12 11 2 14 14 C 1.46500 * 125.01070 * 179.97438 * 13 12 11 15 15 C 1.37753 * 109.98022 * 0.22900 * 13 12 11 16 16 C 1.39143 * 133.33715 * 180.34201 * 15 13 12 17 17 C 1.37771 * 119.78834 * 179.64004 * 16 15 13 18 18 C 1.38810 * 120.65074 * 359.80177 * 17 16 15 19 19 C 1.36676 * 120.50122 * 359.97438 * 18 17 16 20 20 C 1.39523 * 119.78347 * 359.97438 * 19 18 17 21 21 H 1.08994 * 109.47285 * 275.11127 * 1 2 3 22 22 H 1.08997 * 109.46939 * 35.11275 * 1 2 3 23 23 H 1.09006 * 109.46671 * 155.11215 * 1 2 3 24 24 H 0.97001 * 120.00719 * 179.97438 * 6 5 3 25 25 H 1.07996 * 125.13680 * 359.97438 * 12 11 2 26 26 H 1.09002 * 109.47323 * 90.02140 * 14 13 12 27 27 H 1.09012 * 109.46799 * 330.02390 * 14 13 12 28 28 H 1.08997 * 109.47209 * 210.02630 * 14 13 12 29 29 H 1.08002 * 120.10854 * 359.41903 * 16 15 13 30 30 H 1.07997 * 119.67403 * 179.77940 * 17 16 15 31 31 H 1.07997 * 119.74424 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.10333 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1489 1.1845 0.0000 4 1 3.1636 1.2222 -0.3680 5 6 1.5395 2.3368 0.4724 6 7 0.4125 2.2558 1.1489 7 14 2.3170 4.0043 0.1491 8 1 1.7989 4.5525 -1.1300 9 1 1.9785 4.9317 1.2584 10 1 3.7919 3.8543 0.0621 11 6 2.1632 -1.2093 -0.0005 12 6 2.5656 -1.9067 -1.0863 13 7 3.2222 -3.0428 -0.6893 14 6 3.7977 -4.0407 -1.5944 15 6 3.2561 -3.1106 0.6861 16 6 3.7915 -4.0288 1.5841 17 6 3.6677 -3.8130 2.9391 18 6 3.0167 -2.6851 3.4195 19 6 2.4877 -1.7684 2.5548 20 6 2.6028 -1.9669 1.1786 21 1 -0.3633 0.0915 1.0235 22 1 -0.3633 0.8406 -0.5911 23 1 -0.3633 -0.9323 -0.4325 24 1 -0.0137 3.0619 1.4798 25 1 2.3955 -1.6132 -2.1116 26 1 4.8305 -3.7744 -1.8195 27 1 3.2201 -4.0690 -2.5185 28 1 3.7706 -5.0210 -1.1188 29 1 4.2994 -4.9096 1.2200 30 1 4.0808 -4.5287 3.6344 31 1 2.9277 -2.5308 4.4847 32 1 1.9828 -0.8929 2.9356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258790596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:14 Heat of formation + Delta-G solvation = 72.264039 kcal Electronic energy + Delta-G solvation = -15659.378249 eV Core-core repulsion = 13199.681082 eV Total energy + Delta-G solvation = -2459.697167 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.96190 -37.89614 -37.29565 -33.83074 -32.11279 -31.07583 -29.46666 -27.97963 -26.91350 -24.48927 -23.36325 -22.07367 -20.60470 -18.80966 -17.81952 -17.18728 -16.56582 -16.16717 -16.03647 -15.39282 -14.99375 -14.67139 -14.63188 -14.32498 -13.58878 -13.36761 -13.13700 -12.96906 -12.82583 -12.50977 -12.41710 -12.12094 -12.07288 -11.92015 -11.65157 -10.70694 -10.27402 -8.94988 -8.89077 -8.24461 -7.84553 -5.38278 0.34444 0.83053 1.44351 1.46189 1.55455 1.92376 2.06000 2.51504 3.12888 3.28284 3.69909 3.94623 4.13583 4.21210 4.31432 4.40331 4.56076 4.72442 4.76017 4.78922 4.91797 4.95379 5.10973 5.20633 5.37225 5.58419 5.62301 5.70002 5.80359 5.93664 6.06423 6.38291 6.45623 6.64935 7.13443 7.96890 8.35415 9.18465 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.008365 C = 0.007431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.930647 B = 3346.447182 C = 3767.072729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.550 5.550 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.975 3.025 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.272 1.272 11 C 0.071 3.929 12 C 0.022 3.978 13 N -0.486 5.486 14 C 0.079 3.921 15 C 0.087 3.913 16 C -0.132 4.132 17 C -0.100 4.100 18 C -0.160 4.160 19 C -0.086 4.086 20 C -0.158 4.158 21 H 0.004 0.996 22 H 0.026 0.974 23 H 0.023 0.977 24 H 0.250 0.750 25 H 0.179 0.821 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -14.517 -2.717 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.267 5.267 3 C -0.388 4.388 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.802 3.198 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.197 1.197 11 C -0.030 4.030 12 C -0.105 4.105 13 N -0.171 5.171 14 C -0.061 4.061 15 C -0.020 4.020 16 C -0.152 4.152 17 C -0.119 4.119 18 C -0.179 4.179 19 C -0.104 4.104 20 C -0.166 4.166 21 H 0.022 0.978 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.196 0.804 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.994 -14.580 -2.940 16.436 hybrid contribution -0.173 1.574 0.114 1.587 sum 6.821 -13.007 -2.826 14.956 Atomic orbital electron populations 1.20555 0.81799 0.95806 0.97752 1.40850 1.01643 0.99338 1.84903 1.19363 0.98387 0.85953 1.35133 0.91951 1.25825 0.98655 1.01982 0.97993 1.70282 1.20737 1.27799 1.39541 0.85161 0.78165 0.79302 0.77170 1.20545 1.21817 1.19734 1.18146 1.03160 0.90678 0.90993 1.22298 1.00321 0.88612 0.99228 1.43784 1.49150 1.20344 1.03841 1.22175 0.99487 0.90767 0.93661 1.18485 1.02229 0.97218 0.84052 1.20342 1.03696 0.99263 0.91929 1.21125 0.98697 0.97326 0.94769 1.20836 1.01740 0.95710 0.99605 1.20313 0.99247 0.98563 0.92324 1.20389 1.04100 0.97367 0.94695 0.97799 0.95529 0.95798 0.94062 0.80370 0.90562 0.88477 0.88463 0.83064 0.82204 0.84813 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.02 8.97 127.77 1.15 11.16 16 2 N -0.55 -30.55 3.13 -530.56 -1.66 -32.21 16 3 C -0.26 -15.32 9.63 84.02 0.81 -14.51 16 4 H 0.06 3.67 7.86 -2.91 -0.02 3.65 16 5 C -0.05 -2.91 5.10 84.81 0.43 -2.47 16 6 N -0.94 -57.67 10.70 21.63 0.23 -57.44 16 7 Si 0.97 46.86 29.57 68.60 2.03 48.89 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 9 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.07 3.46 5.79 39.46 0.23 3.69 16 12 C 0.02 0.84 11.35 83.16 0.94 1.78 16 13 N -0.49 -15.47 3.19 -538.17 -1.71 -17.19 16 14 C 0.08 1.46 11.02 127.77 1.41 2.87 16 15 C 0.09 3.14 6.80 39.01 0.27 3.41 16 16 C -0.13 -3.70 9.95 22.38 0.22 -3.47 16 17 C -0.10 -2.74 10.01 22.30 0.22 -2.51 16 18 C -0.16 -5.43 9.98 22.04 0.22 -5.21 16 19 C -0.09 -3.81 10.05 22.21 0.22 -3.58 16 20 C -0.16 -7.19 6.38 -20.12 -0.13 -7.32 16 21 H 0.00 0.22 7.33 -2.39 -0.02 0.20 16 22 H 0.03 1.48 7.34 -2.39 -0.02 1.46 16 23 H 0.02 1.13 8.01 -2.38 -0.02 1.11 16 24 H 0.25 14.81 8.32 -92.71 -0.77 14.04 16 25 H 0.18 6.00 8.06 -2.91 -0.02 5.98 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 29 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.08 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -73.42 276.44 5.97 -67.44 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.10 Total: 6.69 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.99 Total: -16.17 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.15 Total: -106.85 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -73.42 5.97 -67.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258790596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.707 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds